Homology
BLAST of mRNA_P-canaliculata_contig9937.24049.1 vs. uniprot
Match:
D7G3K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K8_ECTSI)
HSP 1 Score: 327 bits (839), Expect = 1.280e-95
Identity = 265/577 (45.93%), Postives = 322/577 (55.81%), Query Frame = 1
Query: 121 ECLALGNTDNNESVQGLVRSAGCLWLGVFGLPPVPSGEEE-EIVDLWPRKVARFTEDGVAGVLALEGKPDATGPLAAPK-GEGGESDTIAGACEAYNLIARALAELRPFVPAPPDPYEAA---RTPTAPNRSSVLYAKKWPTGEASDAVDTATNGHSG--KTLSPDDSEVEE------DXXXXXXXXXAFVGDKRPVTARALSTRSGGRKSAPALGKRRAGRRRRRVTMSSYKRRSLRDDGGLEAEEEEGDXXXXRAG-KKRGKRGVVPEAEDEADEDPEGARRGAVGVGAGEMTVAAVRASLLRNRADE---GPKPQGEEWEDTVKRFIKHVESLPAGTTQEELSLIFAAALDPTLVRMRAANASLIGLAD--VSASRELSIHDDDXXXXXXXXXXXXGYGGAWSATRGSRGRGRFKVRLELDATDGDEQPPEGIAGLLRAVAEARAAVEATARAEACVAAAGDTLGGLQELKSDYKRSLPTGPREPIQLIIAEEQERVLGYKSAHEIIVRQRIEELCDAGSRVGEAYRTGEAESGWSSVKSQVDKFLRKFTKYSVSRLPS-LGSIPDLLGLGVAS 1791
E AL NT++NES+QGLVRS G LW+G FGLP P+GE+E E+VD+WPRKVARF EDG G LEGKP+ G LAA K G + A A+ LIA+AL ELRP VP PP P +P+ SS K G+A +V + SG K + +V+ DXXXXXXXXX + R G+E ++ XXXX G + RG P GAGEMTVAAVR SLL N ++E GP PQ EWE VK+FI HVESLP GT QEELSL+FAAALDPTLVR+R AN L+GLA+ + + DDD XXXXXXXXXX GA + FKVRLEL+A + PP+GIAG+LRAVA A AAVEA AR EACV GDTLGGL E+K DYKR LP GPREP+Q IIAEE+ RV GY AHE ++R+ E + + G VG AYR E E+GWS V+ QVD FL +F Y S +P+ L + +LG+ +A+
Sbjct: 228 EVFALSNTEDNESLQGLVRSRGSLWIGKFGLPSPPAGEDESELVDIWPRKVARFVEDGGGGSFPLEGKPNTFGSLAASKEGSASRGGAVECARRAHGLIAQALGELRPHVPTPPKEXXXXXVDNNPASPSLSSPSL-KPGRGGKAGGSVVGSGGVSSGSPKAAAASPGKVKPVPMSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRLRGREASNGVEDMDDXXXXXXXXGGAESRGDNAGGP-------------------AGAGEMTVAAVRESLLSNPSEERKPGPSPQ--EWEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLVRLRMANTKLVGLAEACLPQGEGEAPGDDDGEXXXXXXXXXXXXXGAKKSG--------FKVRLELEAPEEGAPPPDGIAGVLRAVAGAAAAVEAAARVEACVICGGDTLGGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVLREAGETVHEVGPEVGRAYRAVEREAGWSGVRDQVDAFLIEFEDYCASLMPAPLSTSRSILGVDLAA 774
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9937.24049.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.28e-95 / Id = 45.93 Sequence D7G3K8_ECTSI
Match Name E-value Identity Description
D7G3K8_ECTSI 1.280e-95 45.93 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-19_005040.1 Exons 2 Model size 2641 Cds size 1065 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817353.825846-UTR-P-canaliculata_contig9937:1046..1289 1622817353.825846-UTR-P-canaliculata_contig9937:1046..1289 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 1047..1289 + 1693495242.4562416-UTR-P-canaliculata_contig9937:1046..1289 1693495242.4562416-UTR-P-canaliculata_contig9937:1046..1289 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 1047..1289 + 1622817353.838815-UTR-P-canaliculata_contig9937:1718..2240 1622817353.838815-UTR-P-canaliculata_contig9937:1718..2240 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 1719..2240 + 1693495242.4688504-UTR-P-canaliculata_contig9937:1718..2240 1693495242.4688504-UTR-P-canaliculata_contig9937:1718..2240 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 1719..2240 + 1622817353.863961-UTR-P-canaliculata_contig9937:3305..4116 1622817353.863961-UTR-P-canaliculata_contig9937:3305..4116 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 3306..4116 + 1693495242.4877837-UTR-P-canaliculata_contig9937:3305..4116 1693495242.4877837-UTR-P-canaliculata_contig9937:3305..4116 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 3306..4116 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817353.8525906-CDS-P-canaliculata_contig9937:2240..3305 1622817353.8525906-CDS-P-canaliculata_contig9937:2240..3305 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 2241..3305 + 1693495242.47829-CDS-P-canaliculata_contig9937:2240..3305 1693495242.47829-CDS-P-canaliculata_contig9937:2240..3305 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 2241..3305 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9937.24049.1
>prot_P-canaliculata_contig9937.24049.1 ID=prot_P-canaliculata_contig9937.24049.1|Name=mRNA_P-canaliculata_contig9937.24049.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=355bp
MSSYKRRSLRDDGGLEAEEEEGDEEGSRAGKKRGKRGVVPEAEDEADEDP back to top mRNA from alignment at P-canaliculata_contig9937:1047..4116+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9937.24049.1 ID=mRNA_P-canaliculata_contig9937.24049.1|Name=mRNA_P-canaliculata_contig9937.24049.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3070bp|location=Sequence derived from alignment at P-canaliculata_contig9937:1047..4116+ (Pelvetia canaliculata dioecious)CAGGCGGATGTCATTGGTCAAGCTCTGGGTTGCGTCGATCCGTTCGAGAA
TGAAGGCACGCCCGATGCCCGCGAGGTGACCGCGAATGGGGTGTCTCGGG
AGGGAGGAGGTGGAGCCCAAGAGTGCCTCGCCCTGGGGAACACGGACAAC
AACGAGTCCGTCCAAGGGCTCGTGCGGAGCGCGGGGTGTCTGTGGCTGGG
TGTCTTCGGGCTGCCACCGGTGCCGTCGGGAGAGGAAGAGGAG GTGAGGT
GGGAGGGGGGAAATAGCGACTACGACTCCTTTGATGAATGTGGTGATGCG
CCTCATCTTGCCGATGGTAAGTCGTCCGTTAGATGCTGTCGGTAAACAGT
AAGCCGCACCAAAAACGCGTTGTCTTGAGGGCTATACCTCTATTATAGTA
TGACATAGTACATTAAGGTAGCACGGTGAGTTCCACAAGGTATACAAAGA
CATAAAAAGTACCGCCATTTATAACATAGTACATTAAGGTAGCACGGTGA
GTGCCACAAGGTATACAAAGACATAAAAAGTACCGCCATTTATAGCAGTA
CAAAAGTCTCCGGCTTTGACGCCTGTCGGTCCTGGAATCCCGCGATTAGC
GGTCAGCGGTCAAGGTCGGTCTCCCCTTATCGGTGTCCCCCGCCTGTTTG
TTTTGTGAACGCCCGCGAACAGATCGTGGATCTCTGGCCGAGGAAGGTTG
CGCGCTTCACCGAAGACGGAGTGGCGGGCGTCCTTGCCCTTGAAGGGAAA
CCAGACGCGACCGGACCGCTCGCGGCGCCCAAGGGAGAGGGGGGCGAGAG
CGACACGATAGCGGGGGCTTGCGAAGCGTACAACTTGATAGCGCGGGCAC
TGGCAGAGCTCCGACCGTTTGTGCCCGCGCCCCCAGACCCTTACGAGGCG
GCCCGAACCCCGACGGCGCCAAACCGGTCGTCCGTGCTCTACGCGAAAAA
ATGGCCCACGGGGGAGGCGTCGGATGCGGTGGACACCGCGACGAACGGGC
ACAGTGGGAAGACGCTGTCTCCAGACGACAGTGAGGTGGAGGAAGACGGG
GAAGAGGAGGAGGAGGAAGAGGAGGCATTTGTTGGTGACAAGCGGCCCGT
AACGGCCAGGGCGCTCTCGACGCGTTCGGGAGGGCGAAAATCAGCGCCAG
CCCTTGGGAAACGGCGCGCCGGTCGAAGGAGGCGCAGGGTGACC ATGTCC
TCGTACAAGCGACGATCCCTCCGAGACGATGGCGGACTCGAGGCAGAGGA
GGAAGAAGGAGACGAAGAGGGTTCTCGTGCGGGGAAGAAGCGGGGAAAGC
GAGGGGTGGTCCCGGAGGCGGAAGACGAAGCGGACGAAGACCCCGAGGGG
GCCAGGCGGGGTGCCGTCGGGGTGGGAGCGGGTGAGATGACCGTCGCGGC
CGTTCGCGCGTCCCTGCTCAGAAATCGAGCCGACGAGGGCCCGAAACCCC
AGGGGGAAGAGTGGGAGGATACCGTGAAGAGGTTCATCAAGCACGTTGAG
AGCCTTCCCGCCGGGACCACCCAGGAGGAGCTCTCCCTCATATTCGCCGC
GGCGCTTGACCCGACCCTCGTGCGCATGCGTGCCGCGAATGCCTCGCTCA
TCGGCCTCGCGGACGTGTCTGCGTCGCGGGAGTTGAGCATTCACGACGAT
GATGATGACGACGATGAAGATGACGAAGGCGGTCATGACGGTTACGGAGG
TGCCTGGAGCGCGACGAGGGGCAGCCGCGGCCGCGGACGCTTCAAGGTCC
GCCTGGAGCTCGACGCGACGGATGGGGATGAGCAGCCGCCAGAGGGGATT
GCGGGCTTACTCCGAGCTGTTGCCGAGGCGAGGGCGGCGGTCGAGGCGAC
CGCGAGAGCCGAGGCGTGCGTCGCTGCTGCGGGAGATACCCTTGGAGGCC
TGCAGGAGCTCAAGTCCGACTACAAGAGGTCCTTACCCACGGGCCCGCGC
GAGCCCATCCAACTCATCATTGCGGAGGAGCAGGAAAGGGTTTTGGGCTA
CAAGAGCGCGCACGAGATCATCGTACGCCAGCGCATAGAAGAGCTGTGTG
ATGCCGGGTCGCGGGTCGGAGAGGCGTACCGTACGGGGGAAGCAGAATCT
GGTTGGAGCTCCGTGAAGTCACAGGTGGATAAATTCTTGCGCAAGTTCAC
CAAGTACAGCGTTTCCCGCCTCCCGAGCCTCGGGTCGATACCGGACCTGC
TGGGGCTAGGGGTTGCTAGTGGCGACGCCAGAGGCTCAGCAGCAGCATCG
AGGGTATAG AGAGACCGCGAGGCCGTGCTTTTGGTCCCGCGTTGTTTTTG
TTGGGGAGGGAGAAGAAGGGAGACAGGGGACAGGGGACGACGTGTCTGCA
TTGATAATTGTCATGACGCGACTCTCGCAAACCTTGTGCCAGAGAGCCCG
GCGGGCACCGTCAAAGTTGCGTGTGTGTGAAATCATAAGCGCTGTGAGTG
TCGTGATTAAAAAAGTTAACATTAAAAATAAAAGCTTTTGCGTCTCGGGA
GTGTTCCAAGCAGCAGACCTCGCTCGCATCCCGACGGAACTCCCCTGCAA
GGACGGAATGTAACCCACGCTTCGGAGAGCCGCCCTCCGCCTGAAAGGAA
TACATGGCTTGACATGACAGCATGGGTTACCGTTGCGAACGAGACGGGCG
GGGACCGGTGCACAAGCTTTTCCTTCTTTTTAAGTTGTTCTTTGTTGGGT
GTTCGTGGGAGAGCGACGGGTGTTGTAAAATACTAGCATTTTGTGTGGTC
CACGAGGGAGCGGAGCGGACGCGTGGAGAGCTTTCCTCTGTTTTTGCATT
TTTCTTGCGATGAAATAACTCAACGAATATGTAGCCGAGGTCGAATTTTC
GATTCAGAGGTGTACAAAACAAGACTAAAAAAGACGGGCGACAGATTTAC
GCGGCTTCTGCATCTTTCGCTCTGAGTTTGCCAGTATTTTTGTGGTCGTC
GTCTGGGAAGGGAGAGACATGAAGAGCGCCGGGCCGAGAGGGCGAGAGGA
GCTAGGAGGGAGAGGGGGGGTTGGCGAGGAATGTCGGTAAGATACAAAGG
TGTGGTAGAATCAACAACAC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9937:1047..4116+
>mRNA_P-canaliculata_contig9937.24049.1 ID=mRNA_P-canaliculata_contig9937.24049.1|Name=mRNA_P-canaliculata_contig9937.24049.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at P-canaliculata_contig9937:1047..4116+ (Pelvetia canaliculata dioecious) back to top