mRNA_P-canaliculata_contig99362.24047.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99362.24047.1
Unique NamemRNA_P-canaliculata_contig99362.24047.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99362.24047.1 vs. uniprot
Match: A0A0P1M9N1_9BACT (Universal stress protein n=2 Tax=Candidatus Kryptonium thompsoni TaxID=1633631 RepID=A0A0P1M9N1_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 8.980e-7
Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = 1 
Query:    1 MNKLKHLFVPVGNSEAGLRGVAIARNLVSPDTERVSLFHTEESSAWAEGIADSAEGLAEEIGLSLHDRVRLSSEKFLDVVAEQFKKANPRVDVRMKFEWGEPLEEALEFAQSNDVDLIVSGSGGPRFFSQLLQTGMSGTIARRATCPVLIAGP 459
            MN++K + +P+  SE  L  +  A+         + L +  E   +   +AD   G      +   + ++ S +K  ++V     K N R  V++    G+P  E +EFA+S +VDLIV GS G      LL    +  + R++TCPVLI  P
Sbjct:    1 MNEIKKILIPIDFSEHSLFALEYAKLFAEKFNAELILLNVVEPIMF---VADLTMGQVNIPSIE-GELIQKSEDKVNEIVNALKDKYNVRGLVKL----GKPYTEIIEFAKSENVDLIVIGSHGHTGVEHLLFGSTAEKVIRKSTCPVLIVRP 145
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BLAST of mRNA_P-canaliculata_contig99362.24047.1 vs. uniprot
Match: UPI001424106A (universal stress protein n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001424106A)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-6
Identity = 56/195 (28.72%), Postives = 83/195 (42.56%), Query Frame = 1 
Query:    1 MNKLKHLFVPVGNSEAGLRGVAIARNLVSPDTERVSLFHTEES---SAWAEGIADSAE--GLAEEIGLSLHDRV--RLSSEKFLDVVAEQFKKANPRVDVRMKFEWGEPLEEALEFAQSNDVDLIVSGSGGPRFFSQLLQTGMSGTIARRATCPVLIAGPGTEAKLLRNEIFKSAVVAVDFEEESNAAAAWARKL 564
            M +++ + +P   S      VA    L      RV + H EE      W   +    E  GLAE     +H++V  R ++    DV  E+ ++    V               L++A +NDVDLIV G+ G R        G++G + R+A CPVL      EA    + + K  +V VDF E +  A   AR L
Sbjct:    1 MLRIQRILIPTDFSPCAEAAVAQGVELARRCGARVRVLHVEEEPGRGTWRGMLHRLLEEVGLAEAFQRRVHEQVQARTAARNLHDVEVEEVRQQGEDV-----------ARVILQYAATNDVDLIVMGTHGHRSLRHPALGGVTGEVVRQAGCPVLAVHAPEEAPPAPHPL-KRVLVPVDFSEPAVVALRHARAL 183
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BLAST of mRNA_P-canaliculata_contig99362.24047.1 vs. uniprot
Match: UPI0019F8E7CC (Universal stress protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019F8E7CC)

HSP 1 Score: 56.6 bits (135), Expect = 4.370e-6
Identity = 39/154 (25.32%), Postives = 76/154 (49.35%), Query Frame = 1 
Query:    7 KLKHLFVPVGNSEAGLRGVAIARNLVSPDTERVSLFHTEESSAWAEGIADSAEGLAEEIGLSLHDRVRLSSEKFLDVVAEQFKKANPRVDVRMKFEWGEPLEEALEFAQSNDVDLIVSGSGGPRFFSQLLQTGMSGTIARRATCPVLIAGPGTE 468
            ++KH+ +P+  S    + +A A N+   +  R +L HT E    +   A  A       G+   D+ +  ++++++  A++ +  N    V+ +   G P    L++A +NDVD+I   + G    ++LL   ++  + R AT PVL+  P +E
Sbjct:  157 RIKHVLIPLDGSGLSEQIIAQAINIGRMNHARYTLLHTIEPVITSYATAPHAATF----GVEWLDQTQSQAKEYIEQTAQRLR--NESFSVKTEVLVGPPAATILDYADTNDVDMIALATHGRSGMARLLLGSVADKVVRGATVPVLVQRPHSE 304
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BLAST of mRNA_P-canaliculata_contig99362.24047.1 vs. uniprot
Match: A0A0S8FEP9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonas sp. SG8_38_2 TaxID=1703358 RepID=A0A0S8FEP9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.100e-5
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:  319 LEFAQSNDVDLIVSGSGGPRFFSQLLQTGMSGTIARRATCPVLIAGPGTEAKLLRNEIFKSAVVAVDFEEESNAAAAWARKL-VLDDGQIHFLH 597
            L++A  ND+DL+V G+ G R   +LL   ++  + R A CPVL       A  +  +  K  VV VDF E ++ A  +A++L  +   ++H LH
Sbjct:  102 LDYANENDIDLVVMGTHGRRGLRRLLLGSVAEEVVRLAPCPVLTVPE--RADTVSTKTLKRIVVPVDFSEYASLALTYAKELSAVHAAEMHLLH 193
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BLAST of mRNA_P-canaliculata_contig99362.24047.1 vs. uniprot
Match: F6B6N4_DESCC (Universal stress protein n=2 Tax=Desulfotomaculum nigrificans TaxID=1565 RepID=F6B6N4_DESCC)

HSP 1 Score: 52.0 bits (123), Expect = 4.120e-5
Identity = 41/146 (28.08%), Postives = 67/146 (45.89%), Query Frame = 1 
Query:   13 KHLFVPVGNSEAGLRGVAIARNLVSPDTERVSLFHTEESSAWAEGIADSAEGLAEEIGLSLHDRVRLSSEKFLDVVAEQFKKANPRVDVRMKFEWGEPLEEALEFAQSNDVDLIVSGSGGPRFFSQLLQTGMSGTIARRATCPVLI 450
            K + +P+  SE  ++ +A A  +      +++L H   S       A    G A++    +++  R   E   +V +    K    +++      G+P +E LE A+S D DLIV GS G       L   +S  +AR A+CPVLI
Sbjct:    3 KKILLPLDGSERAVKALAHAVEIAQKFGAKLTLMHVVPSLPAYVNTAVDQLGHAQQT--IINELTRHGQEMMEEVASSVLDKG---IEIDTYTVLGQPADEILEKAKSEDYDLIVMGSRGLGEIKGYLMGSVSNRVARHASCPVLI 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99362.24047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0P1M9N1_9BACT8.980e-729.41Universal stress protein n=2 Tax=Candidatus Krypto... [more]
UPI001424106A1.310e-628.72universal stress protein n=1 Tax=Rhodocaloribacter... [more]
UPI0019F8E7CC4.370e-625.32Universal stress protein n=1 Tax=Chloroflexi bacte... [more]
A0A0S8FEP9_9BACT1.100e-534.04Uncharacterized protein n=1 Tax=Gemmatimonas sp. S... [more]
F6B6N4_DESCC4.120e-528.08Universal stress protein n=2 Tax=Desulfotomaculum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99362contigP-canaliculata_contig99362:60..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size612
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.643894-CDS-P-canaliculata_contig99362:59..6711622817353.643894-CDS-P-canaliculata_contig99362:59..671Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99362 60..671 -
1693495242.3477101-CDS-P-canaliculata_contig99362:59..6711693495242.3477101-CDS-P-canaliculata_contig99362:59..671Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99362 60..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99362.24047.1prot_P-canaliculata_contig99362.24047.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99362 60..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99362.24047.1

>prot_P-canaliculata_contig99362.24047.1 ID=prot_P-canaliculata_contig99362.24047.1|Name=mRNA_P-canaliculata_contig99362.24047.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=204bp
MNKLKHLFVPVGNSEAGLRGVAIARNLVSPDTERVSLFHTEESSAWAEGI
ADSAEGLAEEIGLSLHDRVRLSSEKFLDVVAEQFKKANPRVDVRMKFEWG
EPLEEALEFAQSNDVDLIVSGSGGPRFFSQLLQTGMSGTIARRATCPVLI
AGPGTEAKLLRNEIFKSAVVAVDFEEESNAAAAWARKLVLDDGQIHFLHS
CGVG
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mRNA from alignment at P-canaliculata_contig99362:60..671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99362.24047.1 ID=mRNA_P-canaliculata_contig99362.24047.1|Name=mRNA_P-canaliculata_contig99362.24047.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig99362:60..671- (Pelvetia canaliculata dioecious)
ATGAATAAGCTCAAACATCTGTTCGTGCCCGTGGGCAACTCTGAGGCCGG
TCTACGGGGAGTAGCTATCGCGAGAAACCTTGTGAGTCCAGACACCGAGC
GCGTGTCGCTCTTCCATACTGAGGAGTCGAGCGCCTGGGCTGAAGGAATA
GCGGATAGCGCAGAGGGCCTAGCGGAGGAAATTGGTTTGAGTCTACATGA
CCGTGTACGCCTCTCAAGTGAGAAGTTTTTGGATGTCGTCGCCGAACAGT
TTAAAAAAGCGAATCCCCGGGTAGACGTGCGCATGAAGTTCGAATGGGGG
GAGCCGTTGGAGGAAGCGTTGGAATTTGCTCAAAGCAACGACGTCGACTT
GATCGTATCCGGATCTGGCGGTCCGAGATTCTTCAGTCAGCTACTGCAGA
CGGGCATGTCCGGCACGATTGCGCGCCGCGCGACCTGTCCCGTACTCATC
GCAGGCCCTGGTACGGAAGCTAAACTTTTACGGAACGAAATTTTTAAGTC
CGCGGTGGTTGCGGTGGATTTCGAAGAAGAATCGAACGCGGCGGCAGCCT
GGGCAAGAAAACTCGTGCTAGATGATGGACAGATACATTTCTTGCACAGT
TGCGGGGTGGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig99362:60..671-

>mRNA_P-canaliculata_contig99362.24047.1 ID=mRNA_P-canaliculata_contig99362.24047.1|Name=mRNA_P-canaliculata_contig99362.24047.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at P-canaliculata_contig99362:60..671- (Pelvetia canaliculata dioecious)
ATGAATAAGCTCAAACATCTGTTCGTGCCCGTGGGCAACTCTGAGGCCGG
TCTACGGGGAGTAGCTATCGCGAGAAACCTTGTGAGTCCAGACACCGAGC
GCGTGTCGCTCTTCCATACTGAGGAGTCGAGCGCCTGGGCTGAAGGAATA
GCGGATAGCGCAGAGGGCCTAGCGGAGGAAATTGGTTTGAGTCTACATGA
CCGTGTACGCCTCTCAAGTGAGAAGTTTTTGGATGTCGTCGCCGAACAGT
TTAAAAAAGCGAATCCCCGGGTAGACGTGCGCATGAAGTTCGAATGGGGG
GAGCCGTTGGAGGAAGCGTTGGAATTTGCTCAAAGCAACGACGTCGACTT
GATCGTATCCGGATCTGGCGGTCCGAGATTCTTCAGTCAGCTACTGCAGA
CGGGCATGTCCGGCACGATTGCGCGCCGCGCGACCTGTCCCGTACTCATC
GCAGGCCCTGGTACGGAAGCTAAACTTTTACGGAACGAAATTTTTAAGTC
CGCGGTGGTTGCGGTGGATTTCGAAGAAGAATCGAACGCGGCGGCAGCCT
GGGCAAGAAAACTCGTGCTAGATGATGGACAGATACATTTCTTGCACAGT
TGCGGGGTGGGCATGAATAAGCTCAAACATCTGTTCGTGCCCGTGGGCAA
CTCTGAGGCCGGTCTACGGGGAGTAGCTATCGCGAGAAACCTTGTGAGTC
CAGACACCGAGCGCGTGTCGCTCTTCCATACTGAGGAGTCGAGCGCCTGG
GCTGAAGGAATAGCGGATAGCGCAGAGGGCCTAGCGGAGGAAATTGGTTT
GAGTCTACATGACCGTGTACGCCTCTCAAGTGAGAAGTTTTTGGATGTCG
TCGCCGAACAGTTTAAAAAAGCGAATCCCCGGGTAGACGTGCGCATGAAG
TTCGAATGGGGGGAGCCGTTGGAGGAAGCGTTGGAATTTGCTCAAAGCAA
CGACGTCGACTTGATCGTATCCGGATCTGGCGGTCCGAGATTCTTCAGTC
AGCTACTGCAGACGGGCATGTCCGGCACGATTGCGCGCCGCGCGACCTGT
CCCGTACTCATCGCAGGCCCTGGTACGGAAGCTAAACTTTTACGGAACGA
AATTTTTAAGTCCGCGGTGGTTGCGGTGGATTTCGAAGAAGAATCGAACG
CGGCGGCAGCCTGGGCAAGAAAACTCGTGCTAGATGATGGACAGATACAT
TTCTTGCACAGTTGCGGGGTGGGC
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