mRNA_P-canaliculata_contig993.24044.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI) HSP 1 Score: 301 bits (771), Expect = 4.830e-94 Identity = 159/306 (51.96%), Postives = 207/306 (67.65%), Query Frame = 2
Query: 11 EGSFADKLTIRLVGKASTLVC--------RKANIQ-----QIVREEQEIISYEVQLTTFGGKATRGRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKT-PPTPVTMGPDTRRVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASVKVPGSQLGELLRAPEKGHERGRSQAAIADAAQCDLQDMLKAGAGTKYELVVPSNCHTSTQTSLIVVRHALVVELKTPSCITSPEVWMPLRV 886
EGS AD+L +RL G A T V +N Q +++ E++E +SY+VQL FGGKA G HS+PF V LPPGLPP+M+E GGSCEI Y EARLHRPG ++FD KGK +L V P++ TPV +GP T+ VKK CCF GS+SIGF+AD S VG NE + + VVA N+SS++V + +EI+Q + W+AR + + + RT+A+V VPG+QL RA EKG++RGRS A IAD A+ DLQ+ L AGAGT Y+L+VP N + Q LI V+H L V LKTP CI+SP+VW PL V
Sbjct: 34 EGSSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSMEENGSQGGSCEIFYGFEARLHRPGMLHFDAKGKAKLTVLSKPHEAGAATPVLVGPATQTVKKFCCFKSGSMSIGFQADHSEVGLNETVGLTVVARNDSSAEVKTMHVEIKQVSTWFARGYKESKTRTVAAVVVPGTQL----RASEKGNQRGRSSAVIADTARADLQEQLGAGAGTHYDLLVPGNSLLTLQADLIEVKHTLSVMLKTPHCISSPDVWTPLLV 335
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE) HSP 1 Score: 260 bits (664), Expect = 3.560e-78 Identity = 145/307 (47.23%), Postives = 188/307 (61.24%), Query Frame = 2
Query: 14 GSFADKLTIRLVGKASTLVCRKAN-------------IQQIVREEQEIISYEVQLTTFGGKATRGRHSYPFAVALPPGLPPTMKETDQGG-GSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPT-PVTMGPDTRRVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASVKVPGSQLGELLRAPEKGHERGRSQAAIADAAQCDLQDMLKAGAGTKYELVVPSNCHTSTQTSLIVVRHALVVELKTPSCITSPEVWMPLRVQ 889
GS A L IRLVG A T A + ++ E+ E + Y+VQL FGGKA G H+Y F+V LPP LP +MKE QGG GSC I Y ARLHRPG +NFD KGK +L V P +T + PV GP + VKKC C GS+S+GF+ADRS+VG NE + V+VVA N+SS V +L +E+ QET W A GD+ R + SV VPG++LG A E G +RG+S AAIAD A+ DL+ L +GAGT++EL VP++ + + I VRH L V ++ P C+ P+VW L VQ
Sbjct: 34 GSPAGSLVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASMKE--QGGNGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPEETSASSPVVAGPAVKAVKKCYCLQSGSMSLGFQADRSVVGLNESVGVIVVARNDSSVAVKNLRVELVQETSWTANGAGDVSTRVVKSVVVPGAELG----AAEFGGQRGQSAAAIADTARADLERQLASGAGTRHELTVPADTSITLNSETIQVRHVLTVRIQGPRCVECPDVWTSLHVQ 334
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI) HSP 1 Score: 221 bits (564), Expect = 2.140e-63 Identity = 130/297 (43.77%), Postives = 165/297 (55.56%), Query Frame = 2
Query: 14 GSFADKLTIRLVGKASTLVCRKAN-------------IQQIVREEQEIISYEVQLTTFGGKATRGRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPT-PVTMGPDTRRVKKCCCFPGGS-----------------------------ISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASVKVPGSQLGELLRAPEKGHERGRSQAAIADAAQCDLQDMLKAGAGTKYELVVPSN 775
GS A L IRLVG A T A + + E+ E + Y+VQL FGG+A G H+Y F+V LPP LP +MKE GGGSC I Y ARLHRPG +NFD KGK +L V P +T + PV GP+ VKKC C GS +S+GF+ADRS+VG NE + + VVA N+SS V +L IE+ QET W A GD+ R + SV VPG++LG + E G +RGRS AAIAD A+ DL+ L +GAGT+YEL VP++
Sbjct: 34 GSPAGSLVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASMKEQG-GGGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPQETSASSPVVAGPEVMAVKKCYCLQSGSCVAESRSTMDLGHRHARWQHGAPTNSHESMSLGFQADRSVVGLNESVGITVVARNDSSVAVKNLRIELVQETSWTANGAGDVSTRAVKSVVVPGAELGAV----EFGGQRGRSAAAIADTARADLESQLASGAGTRYELTVPAD 325
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: A0A7S4EWN0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EWN0_CHRCT) HSP 1 Score: 122 bits (307), Expect = 5.000e-26 Identity = 74/246 (30.08%), Postives = 127/246 (51.63%), Query Frame = 2
Query: 152 GKATRGRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPTPVTMGPDTRRVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASVKVPGSQLGELLRAPEKGHERGRSQAAIADAAQCDLQDMLKAGAGTKYELV-VPSNCHTSTQTSLIVVRHALVVELKTPSCITSPEVWMPLRV 886
G+ GR+ +PF+ LP GLP TM GGG C+IKY + A+L RPG +NFD+K +V P P + P +V C C G++++G D +++GR E + V + N+S++ V+ + + + W+A H + KR IA V+ S + + + + + R +AA A +Q + + G + L+ + ++ S +++ VRH L V L+T C+T+P V +R+
Sbjct: 111 GRLLPGRYEFPFSALLPRGLPTTMY-AHGGGGDCQIKYYINAKLTRPGMMNFDLKTTRPFMVSSTPMPPEAVPAFLQPSETKVSTCWCLGKGAMTLGATLDDTLIGRGESVRVGLALKNDSTATVDKISACVTEFVNWHAGGHSNNHKRKIAQVEFDLSSIHGVDKLDQAALKAVR-EAAAAGLSQTYEELYQQLAHGKQRSLLSISADARDSYAGAVLSVRHQLEVRLETACCVTNPSVQTIVRI 354
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: A0A7S3RIZ2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RIZ2_9SPIT) HSP 1 Score: 75.1 bits (183), Expect = 8.020e-11 Identity = 44/170 (25.88%), Postives = 82/170 (48.24%), Query Frame = 2
Query: 395 RVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASVKVPGSQLGELLRAPEKGHERGRSQAAIAD--AAQCDLQDMLKAGAGTKYELVVPSNCHTST----QTSLIVVRHALVVELKTPSCITSPEVWMPLRV 886
+V CCC P G +++ D + +GR E + + V N SSS + ++R+ W+A H + + RTIA + + + L G + AI + ++ ++ ++ + E P C+ + Q ++ VRH + V +KTP C+T PE+ +P+R+
Sbjct: 1 QVNMCCCIPQGQLTLAASIDDTCMGRGEALDIAVAVNNESSSIPERMYADVREYVSWHAGGHSNHQSRTIAYAEYNPADVEGL------GRKSKHELRAIKENPGSRMEMLALMHRSLQNR-EARQPLRCNPTARDTYQGRVLSVRHVMAVRVKTPYCVTDPELALPIRI 163
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: D7FWP7_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP7_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 8.330e-10 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 17 SFADKLTIRLVGKASTLV---CRKANIQQIVREEQEIISYEVQLTTFGGKATRGRHSYPFAVALPPGLPPTMKETD---QGGGSCEIK 262
S AD+L +RLVG T V K ++ RE++EI+SY+VQL +FGGKA G H++ F+V LP GLPP+M + G G E++
Sbjct: 37 SSADELKLRLVGHVKTAVDYSTDKGEETKMAREDKEILSYDVQLGSFGGKAASGVHNFLFSVTLPAGLPPSMTVSPILTVGAGGTEVQ 124
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: A0A1E7EZE8_9STRA (Arrestin_N domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EZE8_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.900e-9 Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 2
Query: 119 ISYEVQLTTFGGKATRGRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPTPVTMGPDTRRVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSS-SDVNDLEIEIRQE 556
+S ++Q T GK G++ PF+ ALP LP M E + GG +I Y ++ L G V +D + + V + P PD ++VK CCCF GSIS+G D + + + + +V+ AC N S +DV D+ E++++
Sbjct: 97 VSEQLQFT-HTGKIEPGQYVMPFSTALPAFLPSNM-EINAKGGYAKISYKIKMALKGSG-VFWDYTAEASVYVTSA-SIARYVPFDGPPDEQKVKSCCCFGRGSISVGASVDNTSLAKGQ-QAVISYACRNQSRNDVKDIYAELQEQ 238
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: A0A7S3RIT5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RIT5_9SPIT) HSP 1 Score: 66.2 bits (160), Expect = 3.720e-9 Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 2
Query: 110 QEIISYEVQLTTF-GGKATRGRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPTPVTMGPDTRRV 400
++++ V L +F G G + +PF LP LP +M T GGG C ++Y++EARLHRPG + +DV + L V P P P P T +V
Sbjct: 65 KQLLFLNVPLASFPNGVIPAGNYEFPFRALLPEDLPSSMYATG-GGGDCRVEYSIEARLHRPGMLKWDVTARRSLHVQARPLPRIPQPYAAEPVTTQV 161
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: A0A6J0CB85_NEOLC (arrestin domain-containing protein 2-like n=4 Tax=Neodiprion TaxID=270857 RepID=A0A6J0CB85_NEOLC) HSP 1 Score: 59.7 bits (143), Expect = 7.340e-6 Identity = 48/199 (24.12%), Postives = 89/199 (44.72%), Query Frame = 2
Query: 32 LTIRLVGKASTL-VCRKANIQQIVREEQEIISYEVQLTTFGGKAT----RGRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPTPVTMGPDTRRVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASV 613
L +++VG+A ++ + + R E+ S L T G YPF++ LP GLP + + I+YT++A RP + +VK +V N+ P +++ + ++ C C G++S S +++ V V NNS+ +V +++ +RQ+ R+ A S K+ +SV
Sbjct: 40 LRVKVVGEAKVRWTVKRGKSRTVYRGEENYFSSLFHLIGSDSGPTIELPAGHLVYPFSIQLPMGLPNSFEHKIG-----HIRYTIKATFDRPWKFDHEVKAAFTIVSAYNLNERPQAALSIHGNMQKSFCCFCMGKGNLSAIISIPSSGFVPGQIIPVTVECENNSTVEVEQIQVSLRQKLRFEASSPYHRSKKVGSSV 233
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Match: UPI001EF997E8 (arrestin domain-containing protein 17-like n=1 Tax=Diprion similis TaxID=362088 RepID=UPI001EF997E8) HSP 1 Score: 58.2 bits (139), Expect = 2.270e-5 Identity = 43/149 (28.86%), Postives = 71/149 (47.65%), Query Frame = 2
Query: 167 GRHSYPFAVALPPGLPPTMKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPTPVTMGPDTRRVKKCCCFPGGSISIGFEADRSIVGRNEVMSVVVVACNNSSSDVNDLEIEIRQETRWYARSHGDLRKRTIASV 613
G YPF++ LP GLP + E + G I+YT++A RP + +VK +V N P +++ D ++ C C G++S S +++ V V NNS+ +V ++I +RQ+ R+ A S K+ SV
Sbjct: 90 GHLVYPFSIQLPMGLPNSF-EHNIG----HIRYTIKATFDRPWKFDHEVKAAFTIVSTYDLNGRPQAALSIQGDMQKNFCCFCVGKGNLSAVISIPSSGFVPGQIIPVTVECENNSTVEVEQIQISLRQKLRFEASSPYHRTKKAGLSV 233 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig993.24044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig993.24044.1 >prot_P-canaliculata_contig993.24044.1 ID=prot_P-canaliculata_contig993.24044.1|Name=mRNA_P-canaliculata_contig993.24044.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp MKETDQGGGSCEIKYTLEARLHRPGCVNFDVKGKTELVVFPMPNKTPPTPback to top mRNA from alignment at P-canaliculata_contig993:18719..20964- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig993.24044.1 ID=mRNA_P-canaliculata_contig993.24044.1|Name=mRNA_P-canaliculata_contig993.24044.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2246bp|location=Sequence derived from alignment at P-canaliculata_contig993:18719..20964- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig993:18719..20964- >mRNA_P-canaliculata_contig993.24044.1 ID=mRNA_P-canaliculata_contig993.24044.1|Name=mRNA_P-canaliculata_contig993.24044.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at P-canaliculata_contig993:18719..20964- (Pelvetia canaliculata dioecious)back to top |