mRNA_P-canaliculata_contig993.24043.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig993.24043.1
Unique NamemRNA_P-canaliculata_contig993.24043.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig993.24043.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.930e-11
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  155 SDFWIGDSGASCHMTNDASKIYCVRPPTPDQRGVITSDGTRLRLECVGSTNVVFHGGNEKQITMYDVTYVPGTGLEV*SFFVPQGTAD 418
            S  WIGDS ++ H T+D + +Y  RPP  ++  +   DG +L+ EC GS +VVFH   +  +TM D+  VP    ++ S  V Q T D
Sbjct:   13 STVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHD 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig993.24043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE2.930e-1138.64Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig993contigP-canaliculata_contig993:2055..2836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size784
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.4486654-UTR-P-canaliculata_contig993:2054..23591622817353.4486654-UTR-P-canaliculata_contig993:2054..2359Pelvetia canaliculata dioeciousUTRP-canaliculata_contig993 2055..2359 +
1693495242.2525852-UTR-P-canaliculata_contig993:2054..23591693495242.2525852-UTR-P-canaliculata_contig993:2054..2359Pelvetia canaliculata dioeciousUTRP-canaliculata_contig993 2055..2359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.461965-CDS-P-canaliculata_contig993:2359..28361622817353.461965-CDS-P-canaliculata_contig993:2359..2836Pelvetia canaliculata dioeciousCDSP-canaliculata_contig993 2360..2836 +
1693495242.2686427-CDS-P-canaliculata_contig993:2359..28361693495242.2686427-CDS-P-canaliculata_contig993:2359..2836Pelvetia canaliculata dioeciousCDSP-canaliculata_contig993 2360..2836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig993.24043.1prot_P-canaliculata_contig993.24043.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig993 2360..2836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig993.24043.1

>prot_P-canaliculata_contig993.24043.1 ID=prot_P-canaliculata_contig993.24043.1|Name=mRNA_P-canaliculata_contig993.24043.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=159bp
MWFFTGEMRNRLRCTMSRMYQVLDLKFNLFSFHKAQQTHAIVLDAAEAHI
VGKKLIFPREKSGSYLRATPLAPGTVGAKPRTNRALASHISAPLNRCVPS
CPSVPNSSRFSSASKLSGTDAAYDDLLEPIPSPPVSSVLGKIEFGRKPLF
ESDCFLTAA
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mRNA from alignment at P-canaliculata_contig993:2055..2836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig993.24043.1 ID=mRNA_P-canaliculata_contig993.24043.1|Name=mRNA_P-canaliculata_contig993.24043.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=782bp|location=Sequence derived from alignment at P-canaliculata_contig993:2055..2836+ (Pelvetia canaliculata dioecious)
TTCCAACTTGTCCTGGAGCTTCTCGACCGACAGGGCTGTGATGACCCAGT
TCTGTCCCCCAGGCGAGTCTGTGAATTTGAGTGGAACTGTGTCCAGTAGC
TCGGCTAGGACGAATCCCACCAGCGTATTCGCAGCACAGTCTCAGAACAG
CCGTAGCGACTTTTGGATAGGTGACAGTGGTGCATCGTGTCACATGACGA
ACGACGCATCCAAAATATACTGCGTGAGACCCCCCACTCCTGACCAAAGA
GGAGTAATCACGAGCGACGGGACTAGGCTGAGGTTAGAATGTGTCGGCAG
TACCAATGTGGTTTTTCACGGGGGAAATGAGAAACAGATTACGATGTACG
ATGTCACGTATGTACCAGGTACTGGACTTGAAGTTTAATCTTTTTTCGTT
CCACAAGGCACAGCAGACACATGCCATCGTTTTAGATGCAGCTGAAGCAC
ACATCGTGGGGAAAAAACTCATTTTCCCTCGCGAGAAGAGCGGATCGTAC
TTGCGAGCGACCCCACTTGCGCCGGGAACTGTAGGAGCCAAACCAAGGAC
GAACCGAGCTCTAGCCAGTCATATTTCTGCCCCCCTGAATAGATGTGTGC
CGTCTTGCCCGAGTGTTCCGAATAGTTCACGGTTCTCGAGTGCGTCGAAG
CTTTCGGGGACCGATGCAGCGTATGATGATTTGCTGGAACCGATCCCCTC
TCCCCCCGTGAGTTCTGTGTTGGGGAAAATCGAGTTCGGGAGGAAACCCC
TGTTTGAGTCAGATTGTTTCTTGACAGCGGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig993:2055..2836+

>mRNA_P-canaliculata_contig993.24043.1 ID=mRNA_P-canaliculata_contig993.24043.1|Name=mRNA_P-canaliculata_contig993.24043.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at P-canaliculata_contig993:2055..2836+ (Pelvetia canaliculata dioecious)
ATGTGGTTTTTCACGGGGGAAATGAGAAACAGATTACGATGTACGATGTC
ACGTATGTACCAGGTACTGGACTTGAAGTTTAATCTTTTTTCGTTCCACA
AGGCACAGCAGACACATGCCATCGTTTTAGATGCAGCTGAAGCACACATC
GTGGGGAAAAAACTCATTTTCCCTCGCGAGAAGAGCGGATCGTACTTGCG
AGCGACCCCACTTGCGCCGGGAACTGTAGGAGCCAAACCAAGGACGAACC
GAGCTCTAGCCAGTCATATTTCTGCCCCCCTGAATAGATGTGTGCCGTCT
TGCCCGAGTGTTCCGAATAGTTCACGGTTCTCGAGTGCGTCGAAGCTTTC
GGGGACCGATGCAGCGTATGATGATTTGCTGGAACCGATCCCCTCTCCCC
CCGTGAGTTCTGTGTTGGGGAAAATCGAGTTCGGGAGGAAACCCCTGTTT
GAGTCAGATTGTTTCTTGACAGCGGCCATGTGGTTTTTCACGGGGGAAAT
GAGAAACAGATTACGATGTACGATGTCACGTATGTACCAGGTACTGGACT
TGAAGTTTAATCTTTTTTCGTTCCACAAGGCACAGCAGACACATGCCATC
GTTTTAGATGCAGCTGAAGCACACATCGTGGGGAAAAAACTCATTTTCCC
TCGCGAGAAGAGCGGATCGTACTTGCGAGCGACCCCACTTGCGCCGGGAA
CTGTAGGAGCCAAACCAAGGACGAACCGAGCTCTAGCCAGTCATATTTCT
GCCCCCCTGAATAGATGTGTGCCGTCTTGCCCGAGTGTTCCGAATAGTTC
ACGGTTCTCGAGTGCGTCGAAGCTTTCGGGGACCGATGCAGCGTATGATG
ATTTGCTGGAACCGATCCCCTCTCCCCCCGTGAGTTCTGTGTTGGGGAAA
ATCGAGTTCGGGAGGAAACCCCTGTTTGAGTCAGATTGTTTCTTGACAGC
GGCC
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