mRNA_P-canaliculata_contig9928.24041.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE) HSP 1 Score: 274 bits (701), Expect = 4.440e-84 Identity = 177/278 (63.67%), Postives = 207/278 (74.46%), Query Frame = 3 Query: 3 LEQRALEEGPLSYRPMTPPKGRRKPTGGAAGRPSREKKKAKTAAARDSMALDRLKAEXXXXXXXXXXXXXXXXXXXXXXXXXXX-------DMARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
+E L+EGPLSYRPM PKGRR+PTGG GRPS+ K+AKTAAAR +A +RL+AE XXXXXXXXXXXXXXX +MARAA RE +Q++ ERV+ AA AA +K++ G LD++DTS E+KPK GEV + QSRM+L LLF LRK G SE AVL+ ARTFK+G +KVRR+NNHW+DHR+LYET+A GRGKT+KKDD RR LT+ QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSN S GGLLSRLG K
Sbjct: 22 VEYCTLKEGPLSYRPMAKPKGRRQPTGGVVGRPSKSDKRAKTAAARGPLAQERLQAELEQQRAALAADRXXXXXXXXXXXXXXXXXXXXXXEMARAAAPREMREQQDVERVQAAAAAA---AEKVAQG-LDYMDTSVHEVKPKKGEVWTQLQSRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNGSAGGLLSRLGCK 294
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5JVE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE0_9PHAE) HSP 1 Score: 222 bits (566), Expect = 2.010e-67 Identity = 136/266 (51.13%), Postives = 153/266 (57.52%), Query Frame = 3 Query: 18 LEEGPLSYRPMTPPKGRRKPTGGAAGRPSREKKKAKTAAARDSMALDRLKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXDMARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
LEE PLSYRP+ PKGRR+PTGGA GRPS+ K+AK A +AA DTS E+K + GEV QSR++L LLF LRKEG SEN VLQ ARTFK+G +KVRR+NNHW+DHR+LYET+AAGRGKT+KKDD RR LT QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSNRS GGLLSRLG+K
Sbjct: 2 LEERPLSYRPIAKPKGRRQPTGGAVGRPSKSDKRAKNC--------------------------------------------------------------TAGKAAW------------TTDTSVHEVKSEKGEVRTHLQSRIVLMLLFDLRKEGCSENEVVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKTAKKDDGRRRLTKAQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGFK 192
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 233 bits (594), Expect = 1.210e-66 Identity = 170/267 (63.67%), Postives = 193/267 (72.28%), Query Frame = 3 Query: 48 MTPPKGRRKPTGGAAGRPSREKKKAKTAAARDSMALDRLKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXDM-----------ARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
MT PKGR KPTGG GR ++ +K+AKTAAARD++ALDR XXXXXXXXXXXXXXXXXXXXXXXXXXX ARAA RE K+ + L+++DTS E+KPK GEV QSRM+L LLF LRKEG SEN AVLQ ARTFK+G +KVRR+NNHW+DHR+LYET+AAGRGK +K+DD RR LT+ Q QLREFI DEHKAGRQV RTVAEW+HRTC ME QPSNRSVGGLLSRLGYK
Sbjct: 1 MTKPKGRNKPTGGVGGRETKARKRAKTAAARDALALDRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAARAAAQREKXXXXXXXXXXXXXXXXAEKVAQ----DLNYMDTSVHEVKPKKGEVWTHLQSRMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNME-QPSNRSVGGLLSRLGYK 262
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.410e-63 Identity = 137/269 (50.93%), Postives = 158/269 (58.74%), Query Frame = 3 Query: 18 LEEGPLSYRPMTPPKGRRKPTGGAAGRPSREKKKAKTAAARDSMALDRLKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXDMARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKA---QSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
L+EGPLSYRPM PKGRR+PTGG GRPS+ K+AKTAAAR +A +RL+AE EQ+R +AA+ +SRM+L LLF LRK G SE AVL+ ARTFK+G +KVRR+NNHW+DHR+LYE +A GRGKT+KKDD RR LT+ QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSNRS GGLLSRLGYK
Sbjct: 2 LKEGPLSYRPMAKPKGRRQPTGGVVGRPSKSDKRAKTAAARGPLAQERLQAEL-----------------------------------------EQQRAALAADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYEITAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYK 228
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE) HSP 1 Score: 216 bits (551), Expect = 2.690e-62 Identity = 110/149 (73.83%), Postives = 123/149 (82.55%), Query Frame = 3 Query: 369 LDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
LD++DTS E+KPK EV + QSRM+L LLF LRK G EN AVLQ ARTFK+G +KVRR+NNHW+DHR+LYET+A GRGKT+KKDD RR LT+ QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSNRS GGLLSRLGYK
Sbjct: 54 LDYMDTSVHEVKPKKDEVWTQLQSRMVLMLLFDLRKGGCCENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYK 201
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE) HSP 1 Score: 190 bits (482), Expect = 4.050e-52 Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 3 Query: 444 MILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
M+L LLF LRKEG +EN AVLQ ARTFK+G +KVRR+NNHW+DHR+LYET+A GRGKT+KKDD RR LT+ QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSNRS GLLSRLGYK
Sbjct: 1 MVLMLLFDLRKEGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAEGLLSRLGYK 123
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5JIC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC9_9PHAE) HSP 1 Score: 189 bits (479), Expect = 6.140e-51 Identity = 112/185 (60.54%), Postives = 128/185 (69.19%), Query Frame = 3 Query: 261 ARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
ARAA RE +Q E ERVE AA A K+ + LD+IDTS E+KPK GEV + QSRM+L LLF LRK +G +KVRRVNNHW+DHR+LYET+AAGRG T K+DD RR L + Q +LREFI DEHKAGRQV RTVAE MHRTC +E QPSNRSVGGLLSRLGYK
Sbjct: 43 ARAATQREKREQEEDERVEAAAVNAAEKVVQ----DLDYIDTSGHEVKPKKGEVWTQLQSRMVLMLLFNLRK-----------------IGHDKVRRVNNHWWDHRQLYETTAAGRGNTVKEDDGRRRLAEVQADKLREFINDEHKAGRQVFRRTVAECMHRTCNIE-QPSNRSVGGLLSRLGYK 205
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5K4F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F5_9PHAE) HSP 1 Score: 168 bits (425), Expect = 7.910e-46 Identity = 122/263 (46.39%), Postives = 156/263 (59.32%), Query Frame = 3 Query: 60 KGRRKPTGGAAGRPSREKKKAKTAAARDSMALDRLKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXDMARAAENREGD-----------KQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQAARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
+GRR PTGG +GRP + K AAAR++ A+++L + XXXXXXXXX +AR E D +QREQ+RV AAEAA KL P +L F++ S Q L+P+TGE+ QSR+IL L F L K G SEN A Q A+T ++G +KV V WYD + LYET+ GRGK + DD RR +T EQE LREFIK EH+AGRQV RTV +++ C + SNR+VGGLL RLG+K
Sbjct: 4 RGRRVPTGGTSGRPPKAIKGVNAAAARNAKAINKLLDDMEKREAATAAAEXXXXXXXXXVKAMEASVARDREKLARDIARSDVLQQQREQREQDRVSKAAEAA---TSKLPPLALKFVEDSVQSLRPETGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLE--CSFGLEMSNRAVGGLLQRLGFK 261
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5KGQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ7_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.970e-45 Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 3 Query: 510 AARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
AA TFK+G +KVRR+NNHW+DHR+LYET+A GRGKT+K+DD RR +T+ QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSNRS GGLLSRLGYK
Sbjct: 12 AAHTFKIGYDKVRRINNHWWDHRQLYETTAVGRGKTAKRDDGRRRVTEVQEDQLREFISDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYK 112
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE) HSP 1 Score: 174 bits (442), Expect = 4.350e-45 Identity = 119/259 (45.95%), Postives = 136/259 (52.51%), Query Frame = 3 Query: 258 MARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPKTGEVLGKAQSRMILTLLFALRKEGLSENLAVLQA-------------------------------------------------------------------------ARTFKVGEEKVRRVNNHWYDHRRLYETSAAGRGKTSKKDDWRRCLTDEQEGQLREFIKDEHKAGRQVLSRTVAEWMHRTCKMEKQPSNRSVGGLLSRLGYK 815
MA AA RE Q+E ERV+ AA A + +K++ G LD++DTS E M+L LL LRKEG SEN AVLQ ARTFK+G +KVRR+NNHW+DHR+LYET+A GRGKT+KKDD RR LT+ QE QLREFI DEHKAGRQV RTVAEWMHRTC ME QPSNRS GGLLSRLGYK
Sbjct: 1 MASAAAQREKRDQQEVERVQAAAAA---EAEKVAQG-LDYMDTSVHE---------------MVLMLLSDLRKEGCSENEAVLQVSTLKYVHVWCVCFRCIYVGREPLPFVTRLTHLSTLHKCSAGIIVLLYSSSLQQYFSAPEQACMCDVSLCNVQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYK 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9928.24041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9928.24041.1 >prot_P-canaliculata_contig9928.24041.1 ID=prot_P-canaliculata_contig9928.24041.1|Name=mRNA_P-canaliculata_contig9928.24041.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=221bp MARAAENREGDKQREQERVEVAAEAAKGKLQKLSPGSLDFIDTSQQELKPback to top mRNA from alignment at P-canaliculata_contig9928:9739..11181+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9928.24041.1 ID=mRNA_P-canaliculata_contig9928.24041.1|Name=mRNA_P-canaliculata_contig9928.24041.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at P-canaliculata_contig9928:9739..11181+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9928:9739..11181+ >mRNA_P-canaliculata_contig9928.24041.1 ID=mRNA_P-canaliculata_contig9928.24041.1|Name=mRNA_P-canaliculata_contig9928.24041.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at P-canaliculata_contig9928:9739..11181+ (Pelvetia canaliculata dioecious)back to top |