mRNA_P-canaliculata_contig992.24036.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE) HSP 1 Score: 547 bits (1410), Expect = 6.470e-172 Identity = 400/847 (47.23%), Postives = 476/847 (56.20%), Query Frame = 3 Query: 39 TPPTTHPPGLV---VEESLHPTLSPATGRTLER-----------RPPGRSCGTNVLDANEEILCTRLGSAVDDGRI--CETDVDDVGTSSRVSPERTVPEDSGDFSFRGEERLRGGDENGRAGVSLFDMVMSRSSCTASSSNYGDGSVKAGSVGGRSKLSATAGATGAAERDAGEKMGAITTLSLSSLLRGRR--ASAGDERGPGDSTGGKH-KKSSSEDWMALNLEKLSSFRVPETRMGCFPDGDREVLRRYATAPAASEDLARTAIGDDGISQGGGIVATASRRTGAATLGGHPEEQRWQMGSTDPLGRVTRNRMLSATLPTLGAEKP--PASARGGAEWAIENTLRTRVRFEMGPAMAIPPGIGSIPGHLENSALRSFAAGG------TLDETSRRRHRPRFQPMADFQVESSRCEVYSSG--GGGGEGGNEQVGVIPSRNKSFDRPGKEGVSSEEGFHGEGGQASAAEEGAEARNEMGMKPKPDEESAGATREATATAKLDEASEKWRRATLYWVHPATPLPSEALAAKKAAYTEIAKRPGQATKAEGA-LYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAATREGACTDR-----------ARDRGGGEGFYLQCPRFTVLWKLVRDREPSGGGDSEGSSVRLIPVAAMTQSTRRLRKRLTAAGIEFRMPLDPAGDQRDAKAY---EDVLEEWKAMNVTGNAKPGAVYANEEDRGRPHISLLTFRGHMAVHGLFDFLLEACGSFAAGGAGSGVVTRGSSRDDGGGTRSGDVPMLLSREPFLNASLKALKVRRKGSIHRSRASKGSTEATNVQVLELVGHILPSALADLALAMASACTA 2447
TPP HP GL+ +EES HP L+P+ + + GR G V + V G E V DVG+ + + + + G SF G G G SLFDMVMS S + S+ G G S GGRS+LS A ATGA R G K A + + +RGR+ AS DE G G + G ++S+EDWMA NLEKLS+FRVPETR+G FP+G RE LRR ATAP+ S R Q V A+ R G E RW+ G PLGR R + L E P P S+ + LRTRVRFEM P +A+P GIGS+PGHLE+ ALR+FAAG + D R+ R + +SSG GGG GG R ++ G G GG + A +G A K +EA EKWR+ATLYW HPATPLP EALAA+K+A + +AK P ATKA+ + PGGSAASGW +FFWSRRRDWEQAF SLY+GL++ R G R A GEGFYLQCP +TV W+LVR+R GG + EG+ RL+P A MT+STRRLRKRLTAAGIEF MPLDPAGDQRDA+A EDVLEEWKAM+ TGNAKPGAVYANEEDR RP +SLLTFRGHMAVHGLFDFLLEACG G G+ G G G GDVP+LLSREPFLNASLKALKVR+KG +HRSRA+ + + + VQVLELVGH+LPSALADLALAMASACTA
Sbjct: 196 TPPQRHPVGLIDGIIEESRHP-LAPSPAKDKDGDSVGAGLLGLYHSAGRRNGVVVASGSXXXXXXXXXXXVGVGGADGAEHLVGDVGSEAGAASFH-LHSNPGRSSF-------GASTGGGGGASLFDMVMSGVSSCSPQSSIGGGE----SNGGRSRLSVAA-ATGA--RAEGGKPVASSLSGMLGGMRGRQPAASGRDEEGCGVAARGAGVDQTSTEDWMAKNLEKLSNFRVPETRVG-FPEGGREGLRRSATAPSRSPFPPRPEEQQAETPQ----VGAAAGRAG---------EPRWEFGCWHPLGRGQREDAPVSDGTRLNVEAPDNPLSSSPPPDLP----LRTRVRFEMAPGVAVPRGIGSLPGHLESRALRAFAAGSLGMRNRSEDGGVSRQGLGRGGXXXXXXXXXXE-QAWSSGVTGGGSVGGRRA-----RRAETL------------GERGRGGHEAGANDGTAAXXXXXXXXXX-----XXXXXXXXXXKEEEAMEKWRKATLYWEHPATPLPQEALAAQKSAQSRVAKSPAHATKAQDSGARPGGSAASGWTSFFWSRRRDWEQAFGSLYYGLISRNRGGGEGARGXXXXXXXXXAAEGEREGEGFYLQCPLYTVAWRLVRER---GGAEDEGT--RLVPAAVMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQASHADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHSTGVVGGGGLAASGRGGRMGSG---GDVPLLLSREPFLNASLKALKVRQKGPMHRSRATVSAGQDSAVQVLELVGHVLPSALADLALAMASACTA 977
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI) HSP 1 Score: 491 bits (1263), Expect = 1.520e-156 Identity = 343/712 (48.17%), Postives = 411/712 (57.72%), Query Frame = 3 Query: 375 MVMSRSSCTASSSNYGDGSVKAGSVGGRSKLSATAGATGAAERDAGEKMGAITTLSLSSLLRGRR--ASAGDERGPGDSTGGKHK-KSSSEDWMALNLEKLSSFRVPETRMGCFPDGDREVLRRYATAPAASEDLARTAIGDDGISQGGGIVATASRRTGAATLGGHPEEQRWQMGSTDPLGRVTRNRMLSATLPT-----LGAEKPPASARGGAEWAIENTLRTRVRFEMGPAMAIPPGIGSIPGHLENSALRSFAAGGTLDETSRRRHRPRFQPMADF--------QVESSRCEVYSSG--GGGGEGGNEQVGVIPSRNKSFDRPGKEGVSSEEGFHGEGGQASAAEEGAEARNEMGMKPKPDEESAGATREATATAKLDEASEKWRRATLYWVHPATPLPSEALAAKKAAYTEIAKRPGQATKAEGA-LYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAATREGACTDRARDRGGGEG-----------------------FYLQCPRFTVLWKLVRDREPSGGGDSEGSSVR-LIPVAAMTQSTRRLRKRLTAAGIEFRMPLDPAGDQRDAKAYEDVLEEWKAMNVTGNAKPGAVYANEEDRGRPHISLLTFRGHMAVHGLFDFLLEACGSFAAGGAGSGVVTRGSSRDDGGGTR---SGDVPMLLSREPFLNASLKALKVRRKGSIHRSRASKGSTEATNVQV 2372
MVMS +S + S+ G G GS GRS+LS A ATGA R G K A + + +RGR+ AS+ DE G + G ++S+EDWMA+NLEKLS+FRVPETRMG FP+G RE LRR ATAP+ S R +R+ GAA G E RW+ G PLGR + + P L E P + LRTRVRFEM P +A+P GIGS+PGHLE+ ALR+FAAG R R P +S + + +SSG GGG GG R + + G+ G E +G +A EA E K DEA EKWR+ATLYW HPATPLP EALAA+KAA + +AK P ATKA+ + PGGSAASGW +FFWSRRRDWEQAF SLY+GL++ R+RGGGEG FYLQCP +TV+W LVR+R GG + +G+ R L+P A MT+STRRLRKRLTAAGIEF MPLDPAGDQRDA+A EDVLEEWKAM+ TGNAKPGAVYANEEDR RP +SLLTFRGHMAVHGLFDFLLEACG +GVV G G G R GDVP+LLSREPFLNASLKALKV++KG +HRSRA+ + + + VQV
Sbjct: 1 MVMSGASSCSPQSSIGGG----GSNSGRSRLSVAA-ATGA--RAEGGKPVASSLSGMLGGMRGRQPAASSRDEERCGVAARGAGVGQTSTEDWMAINLEKLSNFRVPETRMG-FPEGGREGLRRSATAPSRSPFPPRAEE-----------KQAETRQAGAAA--GRAGEPRWEFGCWHPLGRGQQQQQQRQDAPVSDGTRLTDEAPDNPLSSSPPXXPDLPLRTRVRFEMAPGVAVPRGIGSLPGHLESRALRAFAAGSV---GMRNRSEDGGDPRQGLGRGGGNXXXXDSEKEQGWSSGVAGGGSVGGR--------RARLAETLGERGRDRHEAGANDGTAGTAV--AIEAXXXXXXXXXXXXE-----------RKEDEAMEKWRKATLYWEHPATPLPQEALAAQKAAQSRVAKSPAHATKAQDSGARPGGSAASGWTSFFWSRRRDWEQAFGSLYYGLIS-----------RNRGGGEGARGGRXXXXXXXXXXXXXXXXXXFYLQCPLYTVVWTLVRER---GGAEDDGTRRRRLVPAALMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHS------TGVVGGGGLAASGRGGRMGLGGDVPLLLSREPFLNASLKALKVQQKGPMHRSRATVSAGQDSAVQV 647
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: A0A433PW49_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PW49_9FUNG) HSP 1 Score: 80.5 bits (197), Expect = 1.080e-12 Identity = 70/201 (34.83%), Postives = 97/201 (48.26%), Query Frame = 3 Query: 1881 AAMTQSTRRLRKRLTAAGIEFRMPL--------DPAGDQRDAKAY--EDVLEEWKAMNVTGNAKPGAVYANEEDR--GRPHISLLTFRGHMAVHGLFDFLLEACGSFAAGGAGSGVVTRGSSRDDGGGTRSGDVPMLLSREPFLNASLKALKVRRKGSIHRSRASKGSTEATNVQVL---ELVGHILPSALADLALAMASA 2438
A + +STR LRK L I F +PL DP D DA A E+VL E + +PG+ + DR G S+L FRGHM VHGLF+FLL RD+ RS PML++ FLNA++K ++ R G+I R ST + +Q L ++ G++LP++L L L +A A
Sbjct: 9 AVLNKSTRGLRKALEKEDIPFELPLNRSANDNIDPNADAMDADANNNENVLAELGKLE---ELQPGSTRVVQRDRIVGNARRSVLVFRGHMGVHGLFNFLLNW-------------------RDNRVEFRSRGPPMLVAPCVFLNATVKQAEITRNGTIRRMTTDP-STNRSAMQTLYRIDIDGYLLPTSLYALLLTVARA 186
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: A0A662XQY5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQY5_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.810e-11 Identity = 95/351 (27.07%), Postives = 136/351 (38.75%), Query Frame = 3 Query: 1479 KWRRATLYWVHPATPLPSEALAAKKAAYTEIAKRPGQATKAEGALYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAATREGACTDRARDRGGGEGFYLQCPRFTVLWKLV-----RDREPSGG----------GDSEGSSVRLIP------VAAMTQSTRRLRKRLTAAGIEFRMPLDPAG-DQRDAKAYEDVLEEWKAMNV--TGNAKPGAVYANEEDRGRPHI-------SLLTFRGHMAVHGLFDFLLEACGSFAAGGAGSGVVTRGSSRDDGGGTRSGDVPMLLSREPFLNASLKALKVRRKGSIHRSR-ASKGSTEATNVQV------LELVGHILPSALADL 2417
+W +A Y+ HPA PLP+ + A T G P FF +R W++ F +Y ++ R+G T+ + FYL+ FTV + L RD S G G+ EG ++ P A MTQST R+RK L + + MP A QR+A + + EE KA + N + R P + SLL F GH+AVHGL++FL+ S DVP L + PF NA+++ L+ G + AS S N Q E+ G PS++A L
Sbjct: 42 RWHQALHYFKHPAAPLPASFKLNRLATTTTSESLIGG---------PNRQIRQEEQAFFTARWHTWQETFRDVY---MSFRRQGG-TNAIDSTQHEDSFYLRSNEFTVCFHLNDNDGRRDSILSLGRQHNQKSETPGEPEGDPMQAKPGRYRRLCAVMTQSTARMRKALHRLNVAYSMPYATATRTQREAGEFHLLEEELKAFEADRSRNKANDSSDVPAVTRSVPPVEHVHGTDSLLLFHGHLAVHGLYEFLINRTPM-----------------------SSQDVPELYALHPFGNATIQTLQATSFGRVGGPAVASPPSDTMENPQARATQFRTEISGFCFPSSVATL 356
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: A0A662XRW2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRW2_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.180e-10 Identity = 86/306 (28.10%), Postives = 122/306 (39.87%), Query Frame = 3 Query: 1650 FFWSRRRDWEQAFTSLYHGLLAATREGACTDRARDRGGGEGFYLQCPRFTVLWKL---------------VRDREPSGGGDSEGSSVRLIP------VAAMTQSTRRLRKRLTAAGIEFRMPLDPAG-DQRDAKAYEDVLEEWKAMNVT-----GNAKPGAVYA-------NEEDRGRPHISLLTFRGHMAVHGLFDFLLEACGSFAAGGAGSGVVTRGSSRDDG---------GGTRSGDVPMLLSREPFLNASLKALKVRRKGSIHRSR-ASKGSTEATNVQV------LELVGHILPSALADL 2417
FF +R W++AF Y ++ R+G + D FYL+ FTV + L ++ G+ E S++ P A MTQST R+RK L + + MP A QR+A + + EE KA N G V A E G SLL F GH+AVHGL++FL+ +F + S DD S DVP L + PF+NA+++ L+ G + AS S N Q E+ G PS++A L
Sbjct: 26 FFTARWHTWQEAFRDAY---MSFRRQGGINAKGED-----SFYLRSHEFTVCFHLDGNDGRRDSILSLGRQHNQRAETSGEPEEDSLQAKPGRYRRLCAVMTQSTARVRKALHRLNVAYSMPYTTATRTQREAGEFHLLEEELKAFEADRSRNKANGSSGVVPAVTRSVPPAENVHGAD--SLLLFHGHLAVHGLYEFLINRTRTFLR--EQEPICPLARSFDDQTNAYYAFVFAAMSSQDVPELYALHPFVNATIQTLQATSFGRVGGPAVASLPSDTMENPQARATQFRTEISGFCFPSSVATL 319
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: D0NGB1_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NGB1_PHYIT) HSP 1 Score: 72.0 bits (175), Expect = 4.450e-9 Identity = 82/339 (24.19%), Postives = 133/339 (39.23%), Query Frame = 3 Query: 1479 KWRRATLYWVHPATPLPSEAL---AAKKAAYTEIAKRPGQATKAEGALYPGGSAASGWNTFFWSRRRDWEQAFTSLYHGLLAATREGACTDRARDRGGGEGFYLQCPRFTVLWKLVRDREPSGGGDS----------EGSSVRLIPV------------AAMTQSTRRLRKRLTAAGIEFRMPLDPAGD-QRDAKAYEDVLEEWKAMNVTGNAKPGAVYANEEDRGRPHI-SLLTFRGHMAVHGLFDFLLEACGSFAAGGAGSGVVTRGSSRDDGGGTRSGDVPMLLSREPFLNASLKALKVRRKG----SIHRSRASKGSTEATNVQVLELVGHILPS 2402
+W++A Y+VHPA +P+ L A + + P K E Y + WNT W+++F +Y R AC + G FYL+ +F V + D + + +S E ++ P A M+QS+ R RK L +E+ MP A QR+ + + EE +A ++ + + SLL F GH+AVHGL++FL+ + DVP+L + PF NAS+K+L+V G ++ S S+ + + +E+ G PS
Sbjct: 185 RWQQALQYFVHPADVVPTSVLLNRATTSSTGEPLLGGPKGEHKREEKAY----LTARWNT--------WQESFRDVYMNF----RRRACRTTGDTQDGS--FYLRSSKFVVYFLYDTDSQDAIANESSIISLCRQHDEETNAAETPAKVTKNTQNRRLRAVMSQSSARTRKVLHHLNVEYTMPYVKANQTQREVGEFHLLEEELEASRKRQDSDTILTRTSTAPDNMHGVDSLLLFHGHIAVHGLYEFLINRAPM-----------------------SNQDVPVLYALYPFANASIKSLQVTSFGRVGAAVTESEVGDQSSRSATLFRIEISGFCFPS 482
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Match: A0A835TF63_CHLIN (Uncharacterized protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TF63_CHLIN) HSP 1 Score: 66.6 bits (161), Expect = 2.360e-7 Identity = 80/271 (29.52%), Postives = 112/271 (41.33%), Query Frame = 3 Query: 1683 AFTSLYHGLLAATREGACTDRARDRGGGEGFYLQCPRFTVLWK-LVRDREPSGGGDSEGSSVRLIPVAAMTQSTRRLRKRLTAAGIEFRMPLD--------PAGDQRDAKAYE---DVLEEWKAMNVTGNAKPGAVYANEEDRGRPHISLLTFRGHMAVHGLFDFLLE--------ACGSFAAGGA-GSGVVTRGSSRDDGGGTRSGDVPMLLSREPFLNA-----SLKALKVRRKGSIHRSRA------SKGSTEATNVQVLELVGHILP 2399
A+ + HGL ++ R G C E FY+ P + L + G DS A ++QSTR LR RLTAAG+ F MPL P G+ + A D+ +E N + GA A+ + SL+ RG AVHGL+DFLL GS G A G+ +++DD D+PMLL+ PF ++KAL + + A + G T A VL+L G + P
Sbjct: 357 AWRNALHGLYSSYRSGTC----------ELFYVVNPAPKGPYAALFASKGIRGCNDS---------YAVVSQSTRLLRNRLTAAGVPFTMPLHDQHQPAAAPGGEAAPSTAIAEDGDLCDENPQNNASAAQVLGAGVADNSRQ-----SLILARGPRAVHGLYDFLLNDTSYPGLGKSGSTGVGLAPGASAAAXAAAQDD-----VADLPMLLAPVPFEGGVAWRPTIKALTMTNRDGATAGPAPNPTGTTTGDTGAAVTHVLQLSGPLPP 598 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig992.24036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig992.24036.1 >prot_P-canaliculata_contig992.24036.1 ID=prot_P-canaliculata_contig992.24036.1|Name=mRNA_P-canaliculata_contig992.24036.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=846bp MVMSRSSCTASSSNYGDGSVKAGSVGGRSKLSATAGATGAAERDAGEKMGback to top mRNA from alignment at P-canaliculata_contig992:924..7661+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig992.24036.1 ID=mRNA_P-canaliculata_contig992.24036.1|Name=mRNA_P-canaliculata_contig992.24036.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6738bp|location=Sequence derived from alignment at P-canaliculata_contig992:924..7661+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig992:924..7661+ >mRNA_P-canaliculata_contig992.24036.1 ID=mRNA_P-canaliculata_contig992.24036.1|Name=mRNA_P-canaliculata_contig992.24036.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=5076bp|location=Sequence derived from alignment at P-canaliculata_contig992:924..7661+ (Pelvetia canaliculata dioecious)back to top |