Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 105.5 |
| Seed ortholog evalue | 2.4e-20 |
| Seed eggNOG ortholog | 84531.JMTZ01000004_gene2386 |
| EggNOG OGs | 1NX1N@1224,2DW0R@1,33Y0N@2 |
| Best tax level | Proteobacteria |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 495 |
| Cds size | 495 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817352.2716918-CDS-P-canaliculata_contig99082:557..1052 | 1622817352.2716918-CDS-P-canaliculata_contig99082:557..1052 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99082 558..1052 + |
| 1693495241.4317822-CDS-P-canaliculata_contig99082:557..1052 | 1693495241.4317822-CDS-P-canaliculata_contig99082:557..1052 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99082 558..1052 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99082.24028.1 >prot_P-canaliculata_contig99082.24028.1 ID=prot_P-canaliculata_contig99082.24028.1|Name=mRNA_P-canaliculata_contig99082.24028.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=165bp
MPRFSNVVDGTHGTEANTALKILDSMSNGGPAFRPDLGERGLVQWFVTEG
SPRTGSTPPSAVHIPAEVIVPRGSDVLEFNDTKLREIYDELLPGATDLAK
EQYATNFPARSLTSNRSVNRIEYNARNIAEGQMWTELGKRVAASDSGLGR
VVQSGASIFSRDRPG back to topmRNA from alignment at P-canaliculata_contig99082:558..1052+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig99082.24028.1 ID=mRNA_P-canaliculata_contig99082.24028.1|Name=mRNA_P-canaliculata_contig99082.24028.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at P-canaliculata_contig99082:558..1052+ (Pelvetia canaliculata dioecious)
ATGCCAAGATTTTCTAACGTGGTGGACGGCACACACGGTACAGAAGCTAA
TACGGCGTTGAAAATTCTTGATTCCATGAGCAACGGGGGCCCAGCTTTCA
GGCCGGATCTTGGAGAAAGAGGACTCGTGCAATGGTTTGTAACCGAAGGA
TCTCCCAGAACGGGTTCTACACCCCCTTCGGCCGTGCACATTCCTGCAGA
GGTCATTGTTCCGAGAGGTTCTGACGTTCTGGAATTTAACGATACGAAGC
TGCGTGAAATTTACGATGAGTTATTGCCAGGCGCAACTGACCTGGCTAAA
GAACAATACGCAACGAATTTTCCTGCTCGTTCTCTGACGTCAAATCGTTC
TGTAAATCGAATTGAATACAATGCAAGGAATATCGCTGAAGGACAAATGT
GGACAGAGTTAGGGAAACGTGTAGCTGCGTCTGACAGTGGTTTGGGCCGA
GTCGTACAGTCCGGCGCAAGTATTTTCTCACGGGATCGACCAGGT back to topCoding sequence (CDS) from alignment at P-canaliculata_contig99082:558..1052+ >mRNA_P-canaliculata_contig99082.24028.1 ID=mRNA_P-canaliculata_contig99082.24028.1|Name=mRNA_P-canaliculata_contig99082.24028.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at P-canaliculata_contig99082:558..1052+ (Pelvetia canaliculata dioecious)
ATGCCAAGATTTTCTAACGTGGTGGACGGCACACACGGTACAGAAGCTAA
TACGGCGTTGAAAATTCTTGATTCCATGAGCAACGGGGGCCCAGCTTTCA
GGCCGGATCTTGGAGAAAGAGGACTCGTGCAATGGTTTGTAACCGAAGGA
TCTCCCAGAACGGGTTCTACACCCCCTTCGGCCGTGCACATTCCTGCAGA
GGTCATTGTTCCGAGAGGTTCTGACGTTCTGGAATTTAACGATACGAAGC
TGCGTGAAATTTACGATGAGTTATTGCCAGGCGCAACTGACCTGGCTAAA
GAACAATACGCAACGAATTTTCCTGCTCGTTCTCTGACGTCAAATCGTTC
TGTAAATCGAATTGAATACAATGCAAGGAATATCGCTGAAGGACAAATGT
GGACAGAGTTAGGGAAACGTGTAGCTGCGTCTGACAGTGGTTTGGGCCGA
GTCGTACAGTCCGGCGCAAGTATTTTCTCACGGGATCGACCAGGTATGCC
AAGATTTTCTAACGTGGTGGACGGCACACACGGTACAGAAGCTAATACGG
CGTTGAAAATTCTTGATTCCATGAGCAACGGGGGCCCAGCTTTCAGGCCG
GATCTTGGAGAAAGAGGACTCGTGCAATGGTTTGTAACCGAAGGATCTCC
CAGAACGGGTTCTACACCCCCTTCGGCCGTGCACATTCCTGCAGAGGTCA
TTGTTCCGAGAGGTTCTGACGTTCTGGAATTTAACGATACGAAGCTGCGT
GAAATTTACGATGAGTTATTGCCAGGCGCAACTGACCTGGCTAAAGAACA
ATACGCAACGAATTTTCCTGCTCGTTCTCTGACGTCAAATCGTTCTGTAA
ATCGAATTGAATACAATGCAAGGAATATCGCTGAAGGACAAATGTGGACA
GAGTTAGGGAAACGTGTAGCTGCGTCTGACAGTGGTTTGGGCCGAGTCGT
ACAGTCCGGCGCAAGTATTTTCTCACGGGATCGACCAGGT back to top
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