mRNA_P-canaliculata_contig9907.24026.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: D8LCZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ2_ECTSI) HSP 1 Score: 481 bits (1239), Expect = 6.030e-160 Identity = 261/386 (67.62%), Postives = 311/386 (80.57%), Query Frame = 2 Query: 317 MGDRAALFAGRTGDKSSTKRAVSNTRANSPHRPPSTLEGHRETKRTPSGGRGSAAKGVAASTQRRELQAKEAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAGDEEGTESIVVVASGAPSGTIGDARARLGALKEKYG 1474
M D+ +LFAGRTGDK T + S + S + P+ G E K PS G+ KGVAA+ QRR++Q KEAE+Y KQANK L KT+TRWNPDFFSAAPLFEKAGACYRAAGED KAT+MFMQAG+CQ H+SVMAHASAAKDFREAALITERQGR++EAAA Y+RCAE W+HADE GRAA+Y GRSAKLV+D DE AA +R++ A+KVMVP GSD+++NF RV+G EVLVQ I FLASTN+L++ M+V+ RY IIL+AE +EHSL RMYLTYCILALA GDYVRA++AFR+ HLQSTAYL SEECRVEEELL A +D RP+LL +AQ DRTL RLET IVR+A+SLR+ GDE+ + ++ A PSGTIG A+AR ALKEKYG
Sbjct: 1 MADKKSLFAGRTGDK--TAKLSSAPKKRSGNVMPA-ASGSGEEKAPPSFGKSGFGKGVAATQQRRDVQVKEAEEYLKQANKMLTKTLTRWNPDFFSAAPLFEKAGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQGRREEAAAFYMRCAEAWMHADEPGRAAEYFGRSAKLVKDSDEDAAAERFVTASKVMVPNGSDSRSNFTRVVGSVEVLVQAIIFLASTNRLEQSMEVLSRYVIILEAEGMEHSLGRMYLTYCILALALGDYVRADMAFRNVHLQSTAYLRSEECRVEEELLIAFKDSRPDLLMEAQKDRTLHRLETAIVRIAKSLRVPGDEDDEDEDIIPARETPSGTIGAAQARAQALKEKYG 383
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A836CBL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL3_9STRA) HSP 1 Score: 214 bits (545), Expect = 5.390e-58 Identity = 131/350 (37.43%), Postives = 196/350 (56.00%), Query Frame = 2 Query: 530 AEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDT-KTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRV----------------------------------EEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAGDEEGTESIVVVASGAPS-----GTIGDARARLGAL 1459
A++ R A K + KT +W DFF+AAPLFE+A A YRA G++ A + QAGECQ + A AA+D+REAA + +A ++ A W++ E G+A +YLG++A+++E DE A + Y AA M+P G + T+F++++G E L +RFL +LD+ + V+ RYCI L++E H+L R++LT ++ LA+GDYV A+ A+RD HLQ + YL + EC+V EE+LLTA ++Y +LL + Q R L RL+ P VRLA++L I G + T ++ A+ A S G + DARAR+ AL
Sbjct: 79 ADEARAAAAKLITKTWKQWTCDFFAAAPLFERAAAAYRACGQEEAALMAYAQAGECQDENA--AWPLAARDYREAAQLALTCRADAKAVEMFKAAATSWMNGAEPGKAGEYLGKAAQVLEGIDEDRAAEEYKAAADAMIPEGVNPYTTDFIKIVGARETLDAALRFLLGARRLDDALHVLRRYCIFLESERATHTLHRLFLTEAVVLLARGDYVAADAAYRDAHLQDSEYLRAPECKVRHWRKLAAFEVGVVXXXXXXXXXXXXXXXXXXXXEEDLLTAFKNYDADLLAETQRSRALLRLDAPAVRLAQALTIDGMGDMTANVASAAAAAASKGPQLGNLSDARARIAAL 426
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A7S1U2H6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2H6_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.400e-22 Identity = 92/295 (31.19%), Postives = 149/295 (50.51%), Query Frame = 2 Query: 503 QRRELQAKEAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGR---AADYLGRSAKLVEDEDERAATDRYIQAAKVMVPP---GSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAG 1369
QR E +A+ ++Y K+ K LQ T+TRW PD FSA FE+A Y+AA E ++A + ++ A QS++ +A K F AA +TE G ++EAA LY A + D GR +YL ++A + A D +A +V VP G+D + + + F +LDE M + R+ ++ + + + L+ ++ LA + A F ++HLQ + YL S++C VEE+LLT +++ P LE+A+ R L+ L +VR +L + G
Sbjct: 37 QRAEKKAEADKEY-KRGMKYLQTTLTRWKPDHFSAVTYFERAARFYKAADEHDEARNTYLTAA--QSYKESEDFGNAVKAFANAADLTEALGNEEEAAKLYREAA--FCAVDSGGRFDHPEEYLMKAALAMAGTSISKAVDIAKEAVEVAVPSSALGADGG-GYQPTTKALDCIRNAYAFFCEYGKLDEAMALGPRFEVVCSWAQQDLTWRQFKLSCTVITLATAGFESAWSLF-EKHLQDSDYLRSDQCAVEEKLLTTFKNFDPEALEEAKRARQLQALNPFVVRSLATLTLEG 324
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A8K1CI65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI65_PYTOL) HSP 1 Score: 105 bits (261), Expect = 2.210e-20 Identity = 87/298 (29.19%), Postives = 144/298 (48.32%), Query Frame = 2 Query: 512 ELQAKEAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAAL------------YLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAG 1369
E + KEA+++ KQANK ++KTM RW PD+ +AAPL EKA YRAAG+ +A + + QA Q+ + AA++ A I +Q ++ AA Y + E G+AAD L + A + ED + Y++A +M G K +F ++ + +L E + +++R I D +++ + YLT +L L GD A+ + + LQS ++L S+EC + E+L+ A ++ LL++ + L+ I +LA L I G
Sbjct: 6 EKKRKEADEHMKQANKLMEKTMFRWQPDYLAAAPLIEKAADAYRAAGDYERAKAAYAQAALVQNKS--RSPFRAAQNCENGAKIVVQQIKETRAAGPQKDKYLAELKKNYEAACGYYSDMGELGKAADALVKGAVVCEDNGVADVKELYLRACSLMEAQG---KPHFA-----VDIFKKTFTYLVKKELYKESLSLLKRQVAIYTEIDQRNNIHKCYLTEIVLLLTLGDVAAADQQYMAQ-LQSDSFLSSDECALTEDLVRAFKNGNEELLQETIRKQGFSFLDNQIGKLARKLSIYG 292
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A6M2DFY1_9NEOP (Protein required for fusion of vesicles in vesicular transport gamma-snap (Fragment) n=1 Tax=Xenopsylla cheopis TaxID=163159 RepID=A0A6M2DFY1_9NEOP) HSP 1 Score: 78.6 bits (192), Expect = 6.140e-12 Identity = 77/315 (24.44%), Postives = 138/315 (43.81%), Query Frame = 2 Query: 527 EAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAGDEEGTESIVVVASGAPSGTIGDARAR-LGALKEK 1468
EA +Y +QA KCL+ + +W PD+ AA ++KA +R A +++ + +++A +C H+ +A LI E + + ++ A A L ++AK++E + A Y +AA V + S + G E + + R + D+ + R + Q+ D S+ R+ + ++ LA+ D+V AE AF++ A E + E LL A D P+ +A D +R ++ RLA L + ++ A+ APS ++ ++ A A KEK
Sbjct: 34 EANEYIRQAEKCLKTSFLKWKPDYELAAEEYQKAAVSFRTAKAFDQSKNSYLKAADC--HKQTXXXXXXXXXXDQAILICNESKNLSEIKGFAEKASSLYQQHGSADAGATVLEKAAKILEQNYPQDAITLYQRAADVSLIEDSSRQ--------GAEYVNKVARIMVKLQMYDQAADALRRVIGLYQSSDSYQSIGRLTVALVLVQLAREDFVAAEKAFKEWGNCCDAA----EVQTLERLLQAYDDEDPDAAARALRDPFIRHMDVEFARLATILPLPKGVSIDQTPASSATCAPSASVMESAATSYVATKEK 334
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A812VVG4_SYMMI (SnpC protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VVG4_SYMMI) HSP 1 Score: 75.1 bits (183), Expect = 4.050e-11 Identity = 62/225 (27.56%), Postives = 104/225 (46.22%), Query Frame = 2 Query: 770 RQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGC--EVLVQGIRFLAS---------------TNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAGDEEGTESI 1393
+QG + +AA ++ R A +W + E + ++L ++AK +ED D A D Y + ++P DT T+ + ++L FL T E + R + + + E SL RM +T IL L GD V A+ F D HL S+AYL S EC++ E+ L A + +LL++AQ L L+ + ++A +L + + +
Sbjct: 1 QQGDRRQAATIFHRSAMLWGVSGEVTKTGEFLIKAAKELEDVDPAQARDYYYEGLGHIIP--EDTPTDMMSSTPALAPDMLRAAFSFLLKLRASSPDNARDPSRYTVPTQEVLSFAARMLRVYEGLESEASLCRMMVTITILQLELGDVVAADRTFLD-HLGSSAYLKSVECKLAEDFLQAFKQMDVDLLDEAQRSHHLIHLDRDVQKIAATLSLMASHNAPDPV 222
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A668A007_9TELE (Gamma-soluble NSF attachment protein-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668A007_9TELE) HSP 1 Score: 75.1 bits (183), Expect = 5.280e-11 Identity = 69/281 (24.56%), Postives = 126/281 (44.84%), Query Frame = 2 Query: 527 EAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAG 1369
EA ++ +A KCL+ ++T+W PD+ SAA + KA C++ A + ++A +++ E + + HA+ A + + R + EA + M++ AA L R+ KL+E + A D Y +AA V N R+ E+L + R L +LDE +++ + + + + ++ L +GDYV A+ R+ + Y SE+ E LL + + + + N L+ ++ +LA SLR+ G
Sbjct: 8 EAHEHITKAEKCLKTSLTKWKPDYDSAASEYAKAAVCFKNAKQFDQAKDAYLKEAEYHTENKALFHAAKAIEQAGMMMKVSRTPKMPEAIQYIEKACMMYMENGTPDTAAMALDRAGKLIEPINLDKAVDLYQKAAGVF--------ENEDRLRQAAELLGKASRLLVRLKRLDEAAVALQKEKNMYKEIENFPMCFKKTTAQVLIHLHRGDYVAADKCVRESY-SLPGYSGSEDSVAMETLLQGYDEQDEDQVYRVCNSPLLKYMDNDYAKLAISLRVPG 279
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: UPI001C09C627 (N-ethylmaleimide-sensitive factor attachment protein, gamma b isoform X1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C09C627) HSP 1 Score: 70.1 bits (170), Expect = 2.400e-9 Identity = 69/281 (24.56%), Postives = 122/281 (43.42%), Query Frame = 2 Query: 527 EAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAG 1369
EA ++ +A KCL+ +MT+W PDF SAA + KA ++ A + ++A +++ E + + HA AK V AG A L R+ KL+E D A D Y +AA V +T+ R+ E+L + R L +LD+ +++ + + + + + ++ L +GD+V A+ R+ + Y +SE+C E LL + + + + N L+ ++ +LA SLR+ G
Sbjct: 8 EAHEHIAKAEKCLKTSMTKWKPDFDSAATEYSKAAVAFKHAKQFDQAKEAYLKEAEYHTENKALFHA--AKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVENGTAGTAGIALDRAGKLMEPMDLEKAVDLYQKAAYVF-----ETED---RLTQAAEMLGKASRLLVRLRKLDDAAASLQKEKTMYKDLENYPTCFKKTTAQVLIHLHRGDFVAADKCVRESY-SFPGYNNSEDCVAMETLLQGYDEQDEDQVHRVCNSPLLKYMDNDYAKLAISLRVPG 277
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A8C4IUT1_DICLA (N-ethylmaleimide-sensitive factor attachment protein, gamma b n=2 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4IUT1_DICLA) HSP 1 Score: 68.2 bits (165), Expect = 8.110e-9 Identity = 62/244 (25.41%), Postives = 109/244 (44.67%), Query Frame = 2 Query: 527 EAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESVMAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDEC-MQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELL 1255
EA ++ +A KCL+ +MT+W PD+ SAA + KA C++ A + +A +++ E + +A ++ + Q + EA + M++ AA L R+ KL+E + A D Y +AA V N R+ E+L + R L +LDE + +++ + + E+ + ++ L +GDYV A+ R+ + Y SE+C E LL
Sbjct: 8 EAHEHIAKAEKCLKTSMTKWKPDYDSAASEYAKAAVCFKNAKQYEQAKDAYLKEAENHTENKTYPLVCVCVAIEQAGMMMKEQKKMPEAIQYIEKACMMYMENGTPDTAAMALDRAGKLIEPINLEKAVDLYQKAAGVF--------ENEDRLRQAVELLGKASRLLVRLRRLDEAAVALLKEKNMYKEIENFPMCFKKT-TAQVLIHLHRGDYVAADKCVRESY-SLPGYSGSEDCIAMETLL 241
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Match: A0A3B3S6N1_9TELE (NSF attachment protein gamma n=4 Tax=Teleostei TaxID=32443 RepID=A0A3B3S6N1_9TELE) HSP 1 Score: 64.7 bits (156), Expect = 1.440e-7 Identity = 65/286 (22.73%), Postives = 127/286 (44.41%), Query Frame = 2 Query: 527 EAEDYRKQANKCLQKTMTRWNPDFFSAAPLFEKAGACYRAAGEDNKATSMFMQAGECQSHESV-----MAHASAAKDFREAALITERQGRKDEAAALYLRCAEMWVHADEAGRAADYLGRSAKLVEDEDERAATDRYIQAAKVMVPPGSDTKTNFVRVIGGCEVLVQGIRFLASTNQLDECMQVVERYCIILQAEDIEHSLARMYLTYCILALAKGDYVRAEIAFRDEHLQSTAYLHSEECRVEEELLTAVRDYRPNLLEQAQNDRTLRRLETPIVRLAESLRIAG 1369
EA ++ +A KCL+ ++T+W PD+ SAA + KA ++ A + +A +++ E + + A + ALI + R EA + + M+V AA L R+ KL+E + A D Y +AA V N R+ E+L + R L +LDE + + + + + + + + ++ L + D+V A+ R+ + + SE+C E+LL + +++ + + L+ ++ +LA +L++ G
Sbjct: 8 EAHEHIAKAEKCLKTSLTKWKPDYDSAASEYSKAAVAFKNAKQFEQAKDAYVKEAEYHTENKAFFFRALEQAGMMMKVSKMALIDMK--RMPEAIQYIEKASMMYVENGTPDTAAMALDRAGKLIEPVNVEKAIDLYKKAASVF--------ENEDRLRQAAELLGKSSRLLVRLRRLDEAAASIHKEKNMYKEIENYPTCFKKTIAQVLVHLHRNDFVAADKCVRESY-SIPGFSGSEDCVAMEQLLQGYDEQDEDVVNRVCSSPLLKYMDNDYAKLAVTLKVPG 282 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9907.24026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9907.24026.1 >prot_P-canaliculata_contig9907.24026.1 ID=prot_P-canaliculata_contig9907.24026.1|Name=mRNA_P-canaliculata_contig9907.24026.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=551bp MGDRAALFAGRTGDKSSTKRAVSNTRANSPHRPPSTLEGHRETKRTPSGGback to top mRNA from alignment at P-canaliculata_contig9907:3360..11228- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9907.24026.1 ID=mRNA_P-canaliculata_contig9907.24026.1|Name=mRNA_P-canaliculata_contig9907.24026.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7869bp|location=Sequence derived from alignment at P-canaliculata_contig9907:3360..11228- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9907:3360..11228- >mRNA_P-canaliculata_contig9907.24026.1 ID=mRNA_P-canaliculata_contig9907.24026.1|Name=mRNA_P-canaliculata_contig9907.24026.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3306bp|location=Sequence derived from alignment at P-canaliculata_contig9907:3360..11228- (Pelvetia canaliculata dioecious)back to top |