Homology
BLAST of mRNA_P-canaliculata_contig9895.24010.1 vs. uniprot
Match:
D8LAZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI)
HSP 1 Score: 444 bits (1143), Expect = 1.500e-127
Identity = 386/1033 (37.37%), Postives = 478/1033 (46.27%), Query Frame = 1
Query: 4 PSSSSTTNALAGKAVASKSGHVFGGSDD-------AYRLRCFAEVVRLSAV---GSCGERRARVLRS---------------DPLPTVHVGDVLRISCVLTSHLPVVVTLNSLSLEMFAEGSG-----SGSXXXXXXSSGVXWXXXXXXXXXXXXXXXXXXXXXXSIHRQAAWRQKPLRRLESVATLAGGDSDPXXXXXXXXXXXXXXXXXXXXXXXXXXSAITSADALSGARSQAPKAGVADVTGYNEAADSSSSAGTGASAAKG----GVSKSAVFQVPTIRTTRSQSLSPRKSALSASSAPVVSNLNADKPPRASSTTLSTAKTSSSRPGGSRSLARRSTGSSKVSPAGSPSRLPLDAGAALAAPAVGSRLPVPGGGRSRPTCSMTLEGPIELSPGDNEVAFTLRPERPGIITAAGISATWAGVNLAEILFSGASRGAAAGGNATLMP--------PPCSVVVRPFRPQAELEVLPPSFLPFGKEGWVRVRVNTGPDALKDARLRVTAGRGLAWGDVGGARVSRRRFGVGVDGGGGDXXXXXXX------ESGSGVSAPTEETQPVRAWLGEEDPAEVVVDLEELKGPDQTVEISLRLQSTGEASRRGS----PSIPPRSCTIKAELHAWHTRGSVAERAVDVPAAVGGRGAGSPPATGQEPVARPSTAAEYPPRESEALGVECWTRARASVAARLPFEAKVTVVPRPEGFVLVQAALVCSAPVALTLRSCDAVQLEEGSVLAADPNAFLHGELLPPGQPMILAACVQRGAVEA-------------SINHGRDAQS-------LATFRLRYAVEDASSRGRIGMKGSSAGKEHEIFEFDVCIPSPGGDNRPGGAY------NGGVPGSVILGLGLTTFARPHSEGNDASGWEGSVDIIRLALAEPRAFDFGVEGRGIDGGGRXXXXSEAATAATQHVAYEISASPSDWMISGLVKGSTQLNMKDGQ-QIISRVHLVPIRSGLLSLPKLEVTAPIGDWQEVQSVVWAPEERKVLVLPPVETASVCKAQAP 2865
PS S+ NA +AS S H F G AYRL+CFA+V LS V G GE DPL VHVGD L +SCVLTSHLP VTL+SLSLEM EG G SGV S R + R K LRRLESV T A+ + D LS +R+ AP G + S+ +A AS A G G K FQVP IRT RSQSLSPR SA S++S +L S + VP G T P+EL PGDNEV FTLRP G+ITA+ +SA W GV L ++L SG RG G + +P PP S VVRPFRPQA L+V+PPSFLP G E W++V V GPD L+ +RLRVT GRGLAWGD +RV RR + GGGG XXXXXXX E P E P + GEE +++V LEE+ P E+SLR++ST EAS P++ PRS ++AEL AWH+R A A D GVEC T ARA++ RLPFEA+V V R G V Q ALVC+APVAL+LRSC+ +LE G+ + +DPN FL+GE LPPGQP+ LAAC++R + S G + + LA RLRY++ G + + +G+ EIF FDVCIPSP + G GS LTT RP +G G G + RL LAEPRAF+FGV GGG A T Y++ ASPSDWM+ GL++GS +L+ K G Q++ RVHLVPIR GL+ LP+L+V G + VW P+ RKVLVLPP ++ASVC+A+AP
Sbjct: 1016 PSPSADNNA----GIASASSHFFSGDSTNDVGGKRAYRLQCFADV-SLSVVEKEGGVGEXXXXXXXXXXXXXXXXXXXXXXPDPLSAVHVGDRLLVSCVLTSHLPQAVTLDSLSLEMTLEGGXXXXXRGGQEASAGGRSGVG--------------------DRFSNRRSSPRRSKVLRRLESVRT-----------------------------------AVAAEDDLSPSRTPAP--GAPKLQSPPPGTASNGAAALLASGADGSAGQGKGKVPGFQVPPIRTERSQSLSPRLSATSSAS-----DLRE------------------------------------------------------------SLMRVPAGN--------TSSRPVELLPGDNEVVFTLRPTVAGVITASRVSAAWGGVTLVQVL-SGGGRGR--GPSGVTLPSAWLGAPRPPPSAVVRPFRPQAVLKVVPPSFLPLGNEVWLKVAVTAGPDTLRGSRLRVTMGRGLAWGDAEASRVRWRR----LSGGGGXXXXXXXXXXXXXSEGADDGCGPAEAEGPALSRPGEE-ATDMLVALEEVLRPGYVAEVSLRVRSTAEASPPAGGGPGPAVAPRSHVVRAELEAWHSRSPDAAAADDA-------------------------------------GVECRTYARAAIVPRLPFEARVAVTARQAGVVFAQTALVCTAPVALSLRSCELSRLEPGAEVLSDPNGFLNGESLPPGQPLRLAACLRRPSAATXXXXXXXXXXXXXSRGGGEERKGSVGGGVPLAVHRLRYSI------GTVAGESGDSGQAEEIFVFDVCIPSPADGXXXXXXXXXXXXXSPGAAGSGRAQRCLTTAVRPCDDGGAEDGKGG---VTRLKLAEPRAFEFGVVDSEASGGGEDGTGGTAPPTVT----YQVVASPSDWMVGGLIRGSAKLDKKGGGLQVLCRVHLVPIRGGLVELPRLDVVVERGRAAPGEVEVWNPDLRKVLVLPPGDSASVCQARAP 1855
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9895.24010.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.50e-127 / Id = 37.37 Sequence D8LAZ1_ECTSI
Match Name E-value Identity Description
D8LAZ1_ECTSI 1.500e-127 37.37 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 408.7 Seed ortholog evalue 6.9e-111 Seed eggNOG ortholog 2880.D8LAZ1 KEGG ko ko:K20307,ko:K20476 EggNOG free text desc. early endosome to Golgi transport EggNOG OGs KOG1931@1,KOG1931@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04131 Hectar predicted targeting category other localisation Ec32 ortholog description conserved unknown protein Ec32 ortholog Ec-27_005880.1 Exons 3 Model size 3983 Cds size 2592 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817350.9433057-UTR-P-canaliculata_contig9895:3798..4074 1622817350.9433057-UTR-P-canaliculata_contig9895:3798..4074 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9895 3799..4074 + 1693495240.5852597-UTR-P-canaliculata_contig9895:3798..4074 1693495240.5852597-UTR-P-canaliculata_contig9895:3798..4074 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9895 3799..4074 + 1622817350.9927921-UTR-P-canaliculata_contig9895:7549..8664 1622817350.9927921-UTR-P-canaliculata_contig9895:7549..8664 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9895 7550..8664 + 1693495240.6245494-UTR-P-canaliculata_contig9895:7549..8664 1693495240.6245494-UTR-P-canaliculata_contig9895:7549..8664 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9895 7550..8664 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817350.9555318-CDS-P-canaliculata_contig9895:4074..6468 1622817350.9555318-CDS-P-canaliculata_contig9895:4074..6468 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9895 4075..6468 + 1693495240.599448-CDS-P-canaliculata_contig9895:4074..6468 1693495240.599448-CDS-P-canaliculata_contig9895:4074..6468 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9895 4075..6468 + 1622817350.967118-CDS-P-canaliculata_contig9895:6801..6912 1622817350.967118-CDS-P-canaliculata_contig9895:6801..6912 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9895 6802..6912 + 1693495240.6077924-CDS-P-canaliculata_contig9895:6801..6912 1693495240.6077924-CDS-P-canaliculata_contig9895:6801..6912 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9895 6802..6912 + 1622817350.977677-CDS-P-canaliculata_contig9895:7462..7549 1622817350.977677-CDS-P-canaliculata_contig9895:7462..7549 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9895 7463..7549 + 1693495240.6161585-CDS-P-canaliculata_contig9895:7462..7549 1693495240.6161585-CDS-P-canaliculata_contig9895:7462..7549 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9895 7463..7549 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9895.24010.1
>prot_P-canaliculata_contig9895.24010.1 ID=prot_P-canaliculata_contig9895.24010.1|Name=mRNA_P-canaliculata_contig9895.24010.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=864bp
MFAEGSGSGSSGGGGGSSGVGWSGMNSGGAGAAGGTRAGTTDKGSIHRQA back to top mRNA from alignment at P-canaliculata_contig9895:3799..8664+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9895.24010.1 ID=mRNA_P-canaliculata_contig9895.24010.1|Name=mRNA_P-canaliculata_contig9895.24010.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4866bp|location=Sequence derived from alignment at P-canaliculata_contig9895:3799..8664+ (Pelvetia canaliculata dioecious)GCGCCATCTTCGTCGTCCACGACGAACGCGCTTGCCGGAAAAGCAGTAGC
ATCGAAGAGCGGCCACGTCTTTGGCGGTAGCGACGACGCTTACCGTCTCC
GATGCTTCGCCGAAGTAGTGCGGCTTTCGGCGGTCGGAAGCTGTGGCGAG
CGGCGCGCGCGGGTCCTGCGGTCGGACCCGCTCCCGACCGTTCACGTCGG
CGATGTCCTCCGAATTTCGTGCGTGCTGACGAGCCACCTGCCGGTGGTGG
TTACGCTGAATTCCCTCTCGCTCGAG ATGTTTGCCGAAGGCAGCGGAAGC
GGCAGCAGCGGCGGTGGAGGTGGCAGCAGCGGTGTGGGGTGGTCAGGGAT
GAACTCGGGAGGAGCTGGTGCCGCAGGTGGCACGAGGGCTGGAACAACCG
ACAAGGGCAGCATCCATCGGCAGGCGGCGTGGAGGCAGAAACCCCTTCGA
CGGCTCGAGAGCGTCGCGACTCTAGCGGGAGGCGACAGCGACCCTTCCCC
GTCGGGTAGTCCATCCACGAATGACGGTGGCGGCAGTCGGCTTCCCCTCC
CACCCCCCCCTCCCCCTGCTCCTTCGGCAATCACTTCCGCCGACGCGCTC
AGCGGCGCCAGATCGCAGGCGCCGAAGGCAGGGGTCGCGGACGTGACAGG
CTACAATGAGGCGGCGGATTCGTCGTCGTCGGCGGGCACAGGCGCAAGCG
CAGCCAAAGGTGGCGTTAGCAAAAGCGCGGTGTTCCAAGTACCTACGATA
CGAACTACTAGGAGCCAGAGCCTCAGCCCGCGCAAGTCAGCGCTATCCGC
CTCCTCCGCCCCAGTCGTCTCCAACCTCAATGCAGACAAGCCTCCCCGAG
CTTCTAGCACGACACTCTCCACCGCGAAGACTTCGTCGTCGCGCCCCGGT
GGAAGCCGCAGCCTGGCGCGGCGCTCTACCGGGTCCTCGAAGGTGTCGCC
TGCAGGCTCGCCGTCGAGGCTTCCATTAGATGCGGGTGCCGCCCTCGCCG
CCCCCGCCGTCGGATCGCGGCTGCCTGTGCCTGGAGGAGGCCGGTCCAGG
CCTACCTGCTCGATGACATTGGAGGGACCGATCGAGCTCTCGCCCGGCGA
CAACGAGGTGGCCTTCACCCTGCGCCCAGAGAGACCCGGGATCATCACCG
CAGCCGGGATCTCAGCGACGTGGGCGGGGGTCAACCTGGCGGAGATACTG
TTTTCCGGCGCGTCCCGCGGGGCCGCGGCGGGCGGGAACGCTACGCTAAT
GCCCCCCCCCTGCTCGGTGGTGGTGCGCCCTTTCCGTCCCCAAGCAGAGC
TGGAGGTGCTGCCGCCGTCGTTCCTTCCCTTCGGGAAAGAGGGCTGGGTG
CGAGTTCGGGTCAACACGGGGCCTGACGCCCTGAAAGACGCTCGCTTGAG
GGTCACAGCGGGGCGAGGCCTGGCGTGGGGTGATGTTGGGGGCGCACGCG
TGAGCCGGCGTCGGTTCGGCGTTGGCGTTGATGGCGGCGGCGGGGATGGA
GGTGGAGACGGAGGCGAAGAGTCGGGCTCTGGTGTGTCAGCGCCGACGGA
GGAGACGCAACCGGTGCGTGCATGGCTGGGGGAAGAAGATCCCGCGGAGG
TTGTGGTCGATCTCGAGGAGTTGAAAGGGCCCGACCAGACTGTGGAAATC
TCGCTGCGGCTACAGTCGACGGGGGAGGCGTCCAGACGTGGCTCGCCGTC
GATACCACCACGATCCTGTACAATCAAGGCCGAGCTACACGCCTGGCACA
CCAGGGGTTCGGTGGCGGAGAGGGCCGTTGATGTTCCTGCTGCTGTCGGA
GGCAGGGGCGCCGGAAGCCCCCCCGCGACCGGGCAAGAGCCCGTCGCTCG
TCCTTCAACTGCCGCTGAGTATCCACCCCGCGAGAGCGAGGCCTTGGGAG
TGGAGTGCTGGACCCGTGCCCGGGCCAGCGTCGCCGCCAGGCTGCCCTTC
GAGGCGAAGGTCACTGTCGTGCCGCGGCCGGAAGGCTTCGTCCTCGTCCA
GGCGGCTCTTGTCTGCTCCGCGCCCGTAGCGCTTACCCTCCGCTCGTGCG
ACGCCGTCCAGCTGGAAGAGGGCTCCGTTCTCGCTGCAGACCCCAACGCT
TTTCTCCACGGGGAGTTGCTGCCGCCCGGGCAGCCAATGATACTTGCTGC
GTGCGTGCAGCGGGGGGCGGTGGAGGCGAGTATTAACCACGGGCGCGACG
CTCAGTCACTCGCTACTTTCCGTCTGAGGTACGCCGTCGAGGATGCGTCG
AGCCGTGGCCGCATCGGCATGAAAGGGAGCAGTGCTGGGAAGGAACACGA
AATCTTCGAGTTTGATGTCTGCATCCCGAGCCCTGGCGGTGATAATAGAC
CTGGCGGCGCCTATAATGGTGGCGTCCCCGGGAGTGTCATCCTCGGTCTC
GGTCTCACGACGTTCGCGAGGCCTCATAGTGAGGGAAATGACGCAAGCGG
CTGGGAGGGTAGCGTAGATATCATACGGCTTGCGCTGGCGGAGCCAAGGG
CGTTCGATTTTGGCGTGGAAGGACGCGGGATCGATGGTGGCGGCAGAGGG
GGCGGGGGAAGCGAGGCTGCGACGGCGGCGACTCAGCATGTTGCGTACGA
GATCAGCGCCTCCCCCTCGGACTGGATGATCAGCGGCCTGGTTAAGGGTT
CGACGCAATTGAATATGAAA GTGCGTTAATGACCCCGTATCTGGTTTCGT
TAGTGTGGTTGACATCATGTTGAGACGAAGGCGGAGGGGGAGGTTGATGA
AAAATTTATGATAATATCTCTCCCTCGCAGGTGTTGTGATCGCTCGGGTT
ATTCTTACGGTGTTCCATCAACCTCTCGGACGAAGGTAGTTACTCTCTTG
CGCAACGCCTCCCGCTCTTTTCCGCCGACGCAAGCACAACGAATAACAAA
AGAAAGAACAGGCACGTAAGAGGAAGACGAACTTGCGCCCTCACTTGGCC
TTGTCGTTCGGTTATTCTTTCTTTATCGTGTTCCTTTTCAATGGGGTTTG
CAGGACGGGCAGCAGATTATCTCTCGGGTACACCTCGTTCCCATACGCAG
TGGCTTGCTCAGTCTCCCGAAGTTGGAAGTGACTGCGCCGATAGGCGATT
GGCAGGAAGTGCAG GTGAGAGCAGTCAGCCGACCGTATATATATCCCTGT
CTACACATATACACCTATGACCTTGTGCGCTGAACAGGTAATCTTGTTCA
CGTACTCTGGACGTCCGGCTTGGGCTTCGTGCCGCGCTTTTCCTTTGTTG
TTTCGTCGCCCGGAAACTTTGTGAAGATATTTTACAGACCCCGGCGCCGC
GATTTCACGCCACTTTTTTTTCTTTCTTAGACTTCTTTATGCTTCAAACT
CCTTGAAACCGACGGCACAGATTTTTCTCCCAAGCTCGCGACCGCAAGAA
AGAAAATATATTTGCCAAAAGTAGGGTTCGTATGCCTTACGTAGGAGCCA
CAATGCGGACAGGCGGCAACCCAAGACTGTTGTGTTGATTACGTTCTAGC
CGTTGTGCCAAGTCCATGGTAAAAGATACCGCGGCCAGGAAGAAATGCAT
TTCTTTTCTGTTCCCCCGTATAACGCTGGTCCCTCCTTCACGTCCACCCA
CTTTTTGCTTGTGCTTGTGCTTGTGCTTGTGCTTGTACGTGTGCTCGTGC
GGTGCTTGCTGCAGAGCGTTGTATGGGCCCCGGAGGAACGTAAGGTGCTC
GTGCTGCCACCGGTTGAAACCGCCTCCGTGTGCAAAGCCCAAGCACCCTA
G TAGCCCCTTGAAGTAGGTTAACCGACTCGTGGATAACTTTTAAACTTTA
TAAAAATTATTGGTACGTCATACCACATTATATCAGTAAGTAACAAAACA
GCTGAACGTGTCTTCCTGGACGAGCGAGACCAGTGTCCTGGCGCCTTTCT
GAGGCCAACTTTGGCTCCCCAGCCCTCGCCCACCAACCTTCTTCATCCTG
GTACATGCACGGCATTCTGAGCCCGCCATCTTGAGCAACCACTTGGGGAG
GGAGTTGCCAAAAGCGTTGGATAATTTCAGTCCAGGTCCTGGCGCCTTTC
TGAGGTCCACTTTGGCTCCCCAGCCCTCGCCCACCTACCTCCTTCTTCCC
GGTACATGTACGGCATTCTGAGCCCGCCACCTTGAAAACCACGTGTAGAC
GGAATTGCCAAAAGCATTGGATAATTTTTGTTTAGGTCCTGGCGTCTCTC
TGAGGGCCAACTTTGGCTCACCAGCCCTCGCCCACCTACTTTCTTCCCAG
TACATGTACGGCATTCCGAGCCCGCCACCTCGAGTAACCACGTGTGGGAG
TTGCCAAAAGCGTTGGATGATTTTAGTCTAGGGTTGTTTATCTAGCCCGC
CGTACGTGCTGCAGGCGTGACACATCCCTCGCTTCCCGAAATCGCCTCAC
GCGTGAAACACCACTTTGCATCTACGGATCGTGTATGTGGCTAGTCTGCT
GGGACCCCCAAGATTCCGACCCGTGTACTCGTCTCATTGACTACGTTTAC
GCGCTGCAAGCGACAAGTTGACGATGAATGTGGCGCGGATGTTGGAAGTT
CAGCTCCAATCGAGGCTGACCTTCTCCATTTTACTGAAAGTTCGGGTTGC
CAAGTAGGGTTGGAGCGGCAGGGCAGCAAGGCATGATCTTCGTCTCGTGC
GAGCAGCGCGAGTCAGCTTTAAAGGTGTTTTGATGAATTGTAAAAGCAGT
GCCGACCGCGGGCGTATATTTTTGGGCAATTAGCTATAAGATAGGTATCC
TGGCAAGTGACAGGCCAGAAGTGTCGCCCAATCACGTACTTGAGGCGAAA
ACCTGAGTCCATCGAGATGCTGAGCTATAACGGTAGGGCAGGCACGTTGT
GCATTGGAGGAGCGGC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9895:3799..8664+
>mRNA_P-canaliculata_contig9895.24010.1 ID=mRNA_P-canaliculata_contig9895.24010.1|Name=mRNA_P-canaliculata_contig9895.24010.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=5184bp|location=Sequence derived from alignment at P-canaliculata_contig9895:3799..8664+ (Pelvetia canaliculata dioecious) back to top