mRNA_P-canaliculata_contig98949.24009.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: UPI0019C03526 (Type II secretion system protein GspD n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0019C03526) HSP 1 Score: 402 bits (1032), Expect = 1.170e-134 Identity = 207/243 (85.19%), Postives = 228/243 (93.83%), Query Frame = 1 Query: 1 LSDATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILNP 729 LS+ T+S+FETAA+SSIAG+DGG+FGVGGNS DTLFGLI+NALETD DSNILSTPFVTTLDNVPATFLVGQEIPIT GESLG N+NPFRTFERQEVGIQLDVLPQIS+GDV+RLEIEQIVSSISGVLT+ AGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQV VAKVP+LGDIP+AGKLF+S+G+TRNKTNLMVFLRPTIIR+AADARPLT +RLNQ R D+NQ+GR VSKID +L P Sbjct: 387 LSETTRSAFETAAVSSIAGIDGGSFGVGGNSGDTLFGLIINALETDEDSNILSTPFVTTLDNVPATFLVGQEIPITTGESLGGTNINPFRTFERQEVGIQLDVLPQISDGDVVRLEIEQIVSSISGVLTSAAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVNVAKVPILGDIPVAGKLFQSKGRTRNKTNLMVFLRPTIIRNAADARPLTQERLNQIRIEDLNQSGRTVSKIDNLLAP 629
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A8J3CS24_9PROT (Type II secretion system protein GspD n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS24_9PROT) HSP 1 Score: 330 bits (846), Expect = 1.190e-106 Identity = 168/226 (74.34%), Postives = 191/226 (84.51%), Query Frame = 1 Query: 55 GLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILNPP 732 GL GG G+GG S D LFG I+NA+ETD DSN+LSTPFVTTLDN ATFLVGQEIPIT GE+LG+ N+NPFRTFER+EVGIQLDV PQIS+GDVIRLEI Q VSSI+GVLT+ AGDFV NKR+I TTVLANDGEIIVLGGL+QDDEQ+ + KVP GD+P+ G+ FRSEGKTR KTNLMVFLRPTIIR+A DARPLT RLN+ R D+NQ+GR SKID+IL P Sbjct: 395 GLGGGTLGIGGQSGDVLFGAILNAVETDDDSNVLSTPFVTTLDNQSATFLVGQEIPITTGETLGSSNLNPFRTFERKEVGIQLDVTPQISDGDVIRLEISQEVSSIAGVLTSAAGDFVTNKRQIETTVLANDGEIIVLGGLLQDDEQIDIEKVPFFGDLPLIGRAFRSEGKTRTKTNLMVFLRPTIIRNAEDARPLTQSRLNRMRLEDMNQSGRTTSKIDDILIEP 620
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: UPI0004091F02 (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004091F02) HSP 1 Score: 326 bits (835), Expect = 6.210e-105 Identity = 168/230 (73.04%), Postives = 200/230 (86.96%), Query Frame = 1 Query: 40 ISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLG--TDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 ++S+ GLDGG G+ G SNDTL+ ++VNALETD DSNILSTPFVTTLDNVPATFLVGQEIPIT GESLG T NVNPFRTFER+EVGI+L+VLPQISEGDVIRLEI+Q VSSI+G L++ + DFV NKREI TTVLANDGEIIVLGGL+QDDEQ+ +AKVP+LGDIP+ G+ F+S+GK+R KTNLMVFLRP IIR+A+DARPLT D LN++R D+ Q+GR SKID+ + Sbjct: 397 VNSLVGLDGGIGGISGVSNDTLYSVVVNALETDEDSNILSTPFVTTLDNVPATFLVGQEIPITTGESLGLGTTNVNPFRTFEREEVGIKLEVLPQISEGDVIRLEIKQEVSSIAGALSSLSSDFVTNKREIETTVLANDGEIIVLGGLLQDDEQIDLAKVPILGDIPVIGRAFQSKGKSRKKTNLMVFLRPKIIRTASDARPLTQDLLNRARFEDMQQSGRPSSKIDDYV 626
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A420WMB2_9PROT (Type II secretion system protein D (GspD) n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WMB2_9PROT) HSP 1 Score: 320 bits (820), Expect = 1.120e-102 Identity = 167/241 (69.29%), Postives = 200/241 (82.99%), Query Frame = 1 Query: 1 LSDATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 L + TQ+S + AAISSI GL GG G+GG D++F IVNALE D +SNILSTPFVTTLDNVPATFLVGQEIPIT GESLG VNPFRTF+R EVGI+L+VLPQISEGDV+RLEI Q VSSI+G +T+ + DFV NKREI TTVLAN+ EIIVLGGLVQDDEQ+T+ KVP+LGD P+ G+LFR++ K+R KTNL+VF+RPTIIR+ DARPLT +RL+Q R DI+Q+GR SK+DEI+ Sbjct: 389 LDETTQTSLQAAAISSITGLTGGTIGIGGVEGDSVFSAIVNALEKDENSNILSTPFVTTLDNVPATFLVGQEIPITTGESLGATTVNPFRTFDRIEVGIKLNVLPQISEGDVVRLEIAQEVSSIAGAITSLSQDFVTNKREIETTVLANNKEIIVLGGLVQDDEQITIEKVPVLGDAPLIGELFRNKDKSRVKTNLVVFIRPTIIRNGEDARPLTQERLDQIRREDISQSGRTYSKLDEII 629
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: UPI0003A88D91 (type II secretion system secretin GspD n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003A88D91) HSP 1 Score: 313 bits (801), Expect = 4.320e-100 Identity = 159/239 (66.53%), Postives = 194/239 (81.17%), Query Frame = 1 Query: 7 DATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 DA + AA+SS+ GL+GG G G S +TLF +I+NA+ETD +SN+LSTPFVTT+DNVPATFLVGQEIPIT GESLG +NVNPFRTFERQEVGI+L+VLPQISEGDVIRL I Q VSSI+G +T ++ DF+LNKREITTTVLANDGE+IVLGGL+QDDE++ + KVP LGD PI G+LF+S GK R +TNLMVFLRPTIIRSA DARP+T +R+ R +I + SK+D ++ Sbjct: 378 DAANPNIPAAALSSLFGLEGGILGGAGISGNTLFSVILNAVETDDNSNVLSTPFVTTVDNVPATFLVGQEIPITTGESLGANNVNPFRTFERQEVGIKLEVLPQISEGDVIRLTIAQEVSSINGAVTGSSADFILNKREITTTVLANDGEVIVLGGLIQDDEEINIDKVPGLGDAPIIGRLFQSRGKARTRTNLMVFLRPTIIRSAEDARPITRERMEYMRRYEIENSEDGTSKLDRVM 616
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A2G2J4D0_9PROT (Type II secretion system protein GspD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J4D0_9PROT) HSP 1 Score: 285 bits (730), Expect = 3.920e-89 Identity = 147/236 (62.29%), Postives = 180/236 (76.27%), Query Frame = 1 Query: 16 QSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 Q + AAISS+ GL GG FG+GG + LFG ++NA+ DT+SN+LSTPFVTTLDNVPATFLVGQEIP+T GE+LGT+N NPFRT R+E+GI+L+VLPQI+EGDVIRLEI Q VSSIS + V NKREI+TTVLANDGE+IVLGGL+QDDEQ+ +KVP LGDIP+ G LF+S TR +TNLMVF+RPTIIRS D PLT +L+ R + +TG S++D L Sbjct: 403 QGDLQNAAISSLLGLQGGTFGIGGYGSSGLFGAVLNAVSNDTNSNVLSTPFVTTLDNVPATFLVGQEIPVTSGEALGTNNSNPFRTITREEIGIKLEVLPQINEGDVIRLEIRQEVSSISADASVLVSGLVTNKREISTTVLANDGEVIVLGGLMQDDEQLFTSKVPFLGDIPVIGNLFKSHNNTRKRTNLMVFIRPTIIRSREDMMPLTQQKLDIMRRQERRKTGGTSSRLDGAL 638
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A2G2GIX6_9PROT (Type II secretion system protein GspD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GIX6_9PROT) HSP 1 Score: 274 bits (701), Expect = 7.270e-85 Identity = 142/239 (59.41%), Postives = 182/239 (76.15%), Query Frame = 1 Query: 7 DATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 DA S + AAISS+ GL GG G+GG+ + +FG+++NA++ D DSN+LSTPFVTTLDNV ATFLVGQE+P T GE+LGT N NPFRT R+E+GI+L+VLPQI EG V+RLEI+Q VSSIS TA A V NKREI TTVLANDGEIIVLGGL+QDDEQ++ +VPLLG +P+ G LF+S TR +TNLMVF+RPTIIR+ DA P+T +L+ R + ++G +++D+ L Sbjct: 399 DAVAQSTQEAAISSLLGLQGGTIGIGGSGSSGMFGVVLNAVQNDADSNVLSTPFVTTLDNVAATFLVGQEVPFTSGETLGTSNSNPFRTITREEIGIKLEVLPQIIEGGVVRLEIKQEVSSISVDATAIASGLVTNKREIETTVLANDGEIIVLGGLMQDDEQLSQTQVPLLGGLPVIGNLFKSHSNTRRRTNLMVFIRPTIIRNGQDAIPITQQKLDIMRQEEFKKSG--TTRLDDTL 635
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A520XE36_9ACTN (Type II secretion system protein GspD n=2 Tax=Bacteria TaxID=2 RepID=A0A520XE36_9ACTN) HSP 1 Score: 270 bits (689), Expect = 6.090e-83 Identity = 138/230 (60.00%), Postives = 175/230 (76.09%), Query Frame = 1 Query: 34 AAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 AA+ ++ G GG G G ND LFG ++NA+++DTDSN+LSTPFVTT+DNVPA FLVGQE+P + GE+LG +N NPFRT R+EVGI+L+VLPQI+EGDV+RLEI Q VSSI+ +A A D V NKREITTTVLA+DGE+IVLGGL++DDE++ KVP+LGDIPI G LF+S TR +TNLMVF+RPTI+RSA DA P+T +L+ R + + G ID L Sbjct: 407 AALQTLLGAQGGTIGTVGIGNDGLFGAVLNAVQSDTDSNVLSTPFVTTMDNVPAIFLVGQEVPFSSGETLGNNNSNPFRTITREEVGIRLEVLPQITEGDVVRLEIVQEVSSIAPAASAIATDLVTNKREITTTVLADDGEMIVLGGLIEDDEELIDTKVPVLGDIPIVGNLFKSTSDTRTRTNLMVFIRPTILRSAQDAAPVTQQKLDLVRMEEYRRNGEGPLAIDNAL 636
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A2G2MNS3_9PROT (Type II secretion system protein GspD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MNS3_9PROT) HSP 1 Score: 260 bits (665), Expect = 1.980e-79 Identity = 132/232 (56.90%), Postives = 176/232 (75.86%), Query Frame = 1 Query: 28 ETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723 + AA++S+ GL GG G + +D LFG I++A+E DTDSN+LSTPF+TTLDNVPATFLVGQE+P T GE+LG +N NPFRT R+E+GI+L++LPQI++GDV+RLEI Q VSSIS + A D V NKRE +TT+L +DGEIIVLGGL+QDDEQ+ ++VP LGD+P+ G LF+++ +R +TNLMVF+R TI+R DA PLT +L+ R + + G + S IDE L Sbjct: 420 QDAAVNSLLGLQGGTVGFASSGSDGLFGAILSAVENDTDSNVLSTPFITTLDNVPATFLVGQEVPFTSGETLGNNNNNPFRTINREEIGIKLEILPQINQGDVVRLEIIQEVSSISPDASLIASDLVTNKREFSTTMLLDDGEIIVLGGLMQDDEQLFRSQVPFLGDLPVVGNLFKTKNTSRKRTNLMVFIRATILRDGDDAAPLTQQKLDLIRREERLKNGENSSLIDEAL 651
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A4S2H4P9_9PROT (Type II secretion system protein GspD n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4S2H4P9_9PROT) HSP 1 Score: 252 bits (644), Expect = 3.440e-76 Identity = 134/232 (57.76%), Postives = 172/232 (74.14%), Query Frame = 1 Query: 34 AAISSIAGLDGGAFGVGGNSND-TLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILN 726 AAI+S+ G GG GVGG ++D TLFGLI+NALETD+DSN+LS P VT LDN A+ LVGQEIPIT GE+LG +N NPFR ERQ+VG+QLDV PQI+EGD IRL I Q VSSI+G ++A + + N+REITTTVLA+DGEIIVLGGL++ D+Q +VPLLGDIP+AG+LFR+E + + NLMVF+RP IIRSA D R +T + T + S +++I++ Sbjct: 421 AAIASLLGSRGGLLGVGGQTDDGTLFGLILNALETDSDSNVLSKPSVTVLDNEEASILVGQEIPITTGEALGANNTNPFRQIERQDVGVQLDVTPQINEGDTIRLTIRQEVSSIAGPVSANFQELITNQREITTTVLADDGEIIVLGGLIESDQQYRDDQVPLLGDIPVAGRLFRNESNSERRRNLMVFIRPQIIRSAEDMRQVTRQNYGSMTAAQRRATRGNGSSLEDIVD 652 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98949.24009.1 >prot_P-canaliculata_contig98949.24009.1 ID=prot_P-canaliculata_contig98949.24009.1|Name=mRNA_P-canaliculata_contig98949.24009.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=247bp LSDATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNback to top mRNA from alignment at P-canaliculata_contig98949:314..1054- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98949.24009.1 ID=mRNA_P-canaliculata_contig98949.24009.1|Name=mRNA_P-canaliculata_contig98949.24009.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at P-canaliculata_contig98949:314..1054- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98949:314..1054- >mRNA_P-canaliculata_contig98949.24009.1 ID=mRNA_P-canaliculata_contig98949.24009.1|Name=mRNA_P-canaliculata_contig98949.24009.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at P-canaliculata_contig98949:314..1054- (Pelvetia canaliculata dioecious)back to top |