mRNA_P-canaliculata_contig9894.24008.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: D7FM29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM29_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 3.300e-137 Identity = 208/279 (74.55%), Postives = 240/279 (86.02%), Query Frame = 3 Query: 3 MDASEVRIDDKSHRKRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSS---VLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGETPDEGLAKELGGQVTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRGDYNGRAAYRIDPDSIVSVYGGFK 830 +D+ +VR+D S RKRIIF+RH ESEWNEVFNRG+GP F+VRLV + VRE MML+TRDSVFFDSPLSN GI+QTQEL+RFLQK D+FS V++AVA +RGG T+SS V+VTSNLRRAIATGLITLW+RLR GEERYLVHSALQEMTFN+DGIS+L++GE PDEGLAKELGG V FDAEFN GTKALG+TGMKRMKA +EWASQRPED VV +GHSLY RSFFR FLP+ H AK+KK+VNCGVV+FT+ G Y GR AY+I+PDSIVSVYGGFK Sbjct: 217 VDSGKVRVDSTSRRKRIIFIRHGESEWNEVFNRGFGPSFLVRLVSAFVREVMMLSTRDSVFFDSPLSNTGIQQTQELIRFLQKTPDSFSGSGVADAVATLRGGSTQSSQSSVVVTSNLRRAIATGLITLWERLRGGEERYLVHSALQEMTFNIDGISLLERGEKPDEGLAKELGGNVVFDAEFNVGTKALGNTGMKRMKALAEWASQRPEDTVVCVGHSLYFRSFFRCFLPQSAVHDAKKKKMVNCGVVAFTLESGVYEGRQAYKIEPDSIVSVYGGFK 495
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A835ZDW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW6_9STRA) HSP 1 Score: 357 bits (917), Expect = 1.680e-113 Identity = 171/275 (62.18%), Postives = 208/275 (75.64%), Query Frame = 3 Query: 6 DASEVRIDDKSHRKRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGETPDEGLAKELGGQVTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRGDYNGRAAYRIDPDSIVSVYGGFK 830 D V +D + KRI+F+RH ESEWNEVFNRG+GP F+VRLV +L+REA++LTTRDSVFFDSPLS+ GI+QTQEL+RFLQ+P + + PKV E VA++ G K SVL TSNLRRAIATGLI WDRLR+ E +LV S LQE+TFNVDGIS+L+ GE PD + + LG ++ FDAEFN GTK L G RM F +WAS RPED VV GHSL+ R FFRNFLP H +K+KKIVNCGV++FT+ +G NGR AY++DP SI VYGGFK Sbjct: 58 DPDAVVVDPNAPTKRIVFLRHGESEWNEVFNRGFGPSFLVRLVSALIREALLLTTRDSVFFDSPLSDTGIKQTQELVRFLQRPQGSVADPKVDEIVAILNGEAAKGSVLTTSNLRRAIATGLIVFWDRLRQTRENFLVLSCLQEVTFNVDGISLLENGEVPDGSVGRALGQEIAFDAEFNAGTKGLRSNGYARMGEFCKWASARPEDTVVCAGHSLWFRDFFRNFLPFAARHASKQKKIVNCGVIAFTLQQGTLNGRPAYKVDPASITVVYGGFK 332
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A6H5KZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS7_9PHAE) HSP 1 Score: 336 bits (861), Expect = 8.130e-106 Identity = 177/295 (60.00%), Postives = 205/295 (69.49%), Query Frame = 3 Query: 3 MDASEVRIDDKSHRKRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQ-------------------------------------------EMTFNVDGISMLDKGETPDEGLAKELGGQVTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVR 758 +D+ +VR+D S RKRIIF+RH ESEWNEVFNRG+GP F+VRLV + VRE MML+TRDSVFFDSPLSN GI+Q V++AVA +RGG T+SSV+VTSNLRRAIATGLITLW+RLR GEERY VHSALQ EMTFN+DGIS+L++GE PDEGLAKELGG V FDAEFN GTKALG+TGMKRMKA +EWASQRPED VV +GHSLY RSFFR FLP+ H AK+KK+VNCGVV+FT+ R Sbjct: 13 VDSGKVRVDSTSRRKRIIFIRHGESEWNEVFNRGFGPSFLVRLVSAFVREVMMLSTRDSVFFDSPLSNTGIQQ-------------------VADAVATLRGGSTQSSVVVTSNLRRAIATGLITLWERLRGGEERYFVHSALQARRHRRGSSVXXXXXXXMPPLPILSAGYVLCRHDAIYVRAVFQEMTFNIDGISLLERGEKPDEGLAKELGGNVVFDAEFNVGTKALGNTGMKRMKALAEWASQRPEDTVVCVGHSLYFRSFFRCFLPQSAVHDAKKKKMVNCGVVAFTLER 288
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A7S1J5Y9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J5Y9_9EUGL) HSP 1 Score: 229 bits (583), Expect = 1.490e-64 Identity = 125/282 (44.33%), Postives = 175/282 (62.06%), Query Frame = 3 Query: 6 DASEVRIDDKSHRKRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMML-TTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGETPDEGLAKELGGQVT------FDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRGDYNGRAAYRIDPDSIVSVYGGFK 830 D+ VR + +RIIF+RH ES+WN+VFNRG+GP F VRL ++ E +++ DS+FFDSPLS G Q L FL+KP DN P +E + G T SSVLV+SNLRRA+ATG I W R+R+ +E+ + S LQE++ NVD +++ G P + +EL G+ + +N G KAL G KRM AF+EW +R E V+A GHSL+ + FF +LP +H A++ K+VN GVV+FT+ + ++GR Y I P+SI VYGGF+ Sbjct: 57 DSDVVRNMEPQASRRIIFVRHGESKWNDVFNRGFGPSFPVRLFRAIFEELLIIFQADDSIFFDSPLSPLGDSQVLRLYNFLEKP-DNL--PAGAEKDYKVLRGDTGSSVLVSSNLRRAVATGAIGFWGRIRRTKEKIYILSCLQEISRNVDALALAPTGAVPRIDMPRELDGKAGVLDRQYMEGTWNYGNKALSSNGGKRMNAFAEWVFKRDEGTVIAAGHSLWFKHFFNTYLPRSCDHPARKLKMVNSGVVAFTLNQVKFSGRMVYYIVPESIQVVYGGFE 335
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A7S1X7Z0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X7Z0_9CHLO) HSP 1 Score: 226 bits (575), Expect = 1.780e-63 Identity = 126/268 (47.01%), Postives = 170/268 (63.43%), Query Frame = 3 Query: 45 KRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLT-TRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRG-GFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGETPD-EGLAKELGG----QVTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRGDYNGRAAYRIDPDSIVSVYGGF 827 KR+IF+RH ES+WNEVFNRG+GP F VRL+ ++ RE L+ T DSVF DS LS G+ Q +EL++FL+K S P + A+++G T SV+ +SNLRRA+AT I L RL++ E+ + S LQE++FN+D ++ PD +A E+ Q FD NTG K + TG++RM AF E R E ++A GHSLY RSFF+ FLP EH AK+KK+VN G V+F I R + G+ YRI+PDS+ VYGGF Sbjct: 70 KRVIFIRHGESDWNEVFNRGFGPSFFVRLLKAVFREVGELSITPDSVFIDSALSPLGMFQARELVQFLEKDSSTTDHPDLH---ALLKGDSATADSVIFSSNLRRALATAAIGLQQRLQRTGEKCHIASCLQEISFNLDAGALAPALGIPDLHAIAPEMWSTYDPQELFDPSLNTGDKPIFGTGLQRMNAFCELVFGREESTIIATGHSLYFRSFFQTFLPRGAEHVAKKKKMVNSGTVAFNISRAVHAGKQVYRIEPDSVTVVYGGF 334
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: C1N5E2_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N5E2_MICPC) HSP 1 Score: 225 bits (573), Expect = 8.860e-63 Identity = 122/271 (45.02%), Postives = 164/271 (60.52%), Query Frame = 3 Query: 45 KRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGET-PDEGLAKELGGQVTFD------AEFNTGTKALGHTGMKRMKAFSEWASQRPEDV--VVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRG-DYNGRAAYRIDPDSIVSVYGGF 827 KR+IF+RH ES WNEVFNRG+GP F +RL L+ EA ++ +R S F D+PLS+RG Q +EL FL+ + A +RG S+LV SNLRRA+AT I WDR+ + E+ +VHSALQEM NVD ++ +GE P +G+ ++GG T D A N G K + G + F+ W + +D V+ GHSL+ + FF+ FLP +H AK+KKIVNCG V FT+ G D +GR AYRIDP S+ +YGGF Sbjct: 99 KRVIFVRHGESTWNEVFNRGFGPGFPLRLAWGLLHEAAVIFSRGSFFVDAPLSHRGYRQARELRAFLKTYEPTGDGTTTNPDAAALRGDV--RSILVGSNLRRAVATIAIGFWDRIARTREKIIVHSALQEMARNVDAYAIARRGEAVPLDGVEAKIGGGETMDQIPSCDARNNEGNKKVDRCGNDALLEFAAWVVENTKDADCVIVGGHSLWFKEFFKAFLPRRSDHVAKKKKIVNCGCVGFTLQAGRDDDGRVAYRIDPKSVDVIYGGF 367
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A7S4C2E3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C2E3_CHRCT) HSP 1 Score: 220 bits (560), Expect = 4.530e-61 Identity = 117/261 (44.83%), Postives = 163/261 (62.45%), Query Frame = 3 Query: 48 RIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGETPDEGLAKELGGQVTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRG-DYNGRAAYRIDPDSIVSVYGGF 827 R+IF+RH ES WN VFNRG+GP F+ RL+ +L+ E +L DS F DSPLS G+EQ L FL+KP + P E + G ++S +LV+S LRRA AT I+L +R+ + E L+HS+ QE+T NVD S+ +G P EL + D FN G K+L TG++R+ F+ WA+ RPE ++ GHSL+ R+FF+ FLP++ EH +K+ KIVNCG V FT+ G G +RIDP+S+ +YGGF Sbjct: 99 RVIFVRHGESVWNYVFNRGFGPSFIYRLISTLLYELYLLPLFDSAFLDSPLSQLGLEQCAGLQGFLRKPCID---PAAREDFENLVNGESRS-LLVSSQLRRACATLAISLDERISRSHEPILLHSSCQEITRNVDSQSIATRGGAPALYGCDELERPLRLDGTFNRGNKSLAFTGIRRLNDFARWAADRPEQCIIVAGHSLWFRTFFQLFLPKQFEHISKKSKIVNCGAVGFTLQTGLTPEGALRHRIDPESLRVIYGGF 355
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A7S0X839_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X839_9CHLO) HSP 1 Score: 214 bits (546), Expect = 6.740e-59 Identity = 120/279 (43.01%), Postives = 163/279 (58.42%), Query Frame = 3 Query: 45 KRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSP-KVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGET-PDEGLAKELGGQ---------------VTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRGDYNGRA-AYRIDPDSIVSVYGGF 827 KR+IF+RH ES WN+VFNRG+GP F VRLVH LV+EA +L +R S F DSPLS G +Q ++L FL++ + + P A A G T +S++V SNLRRA+AT I +DRL + +E+ V S LQEM NVD ++ E P +G+ + + G + ++ FN G K + GM M F+EWA + D ++A GHSL+ + FF+ FLP+ H K+KKI NCGVV FTI + +RIDPDSI VY GF Sbjct: 94 KRVIFVRHGESTWNDVFNRGFGPMFPVRLVHGLVQEAGVLISRSSYFVDSPLSKLGYKQAKDLRVFLKEQAAASTHPGDAGAADAAALAGVTGTSIVVASNLRRAVATTAIGFYDRLARTQEKVYVLSCLQEMARNVDAYALAGAREAVPLDGIEEHIAGYGLEASGLRTGDSGSVIGLNSHFNAGNKPIKRNGMNSMTEFAEWAVAQDADTIIAGGHSLWFKEFFKAFLPKSSLHKCKKKKIANCGVVGFTIQHAKHPTHGDMFRIDPDSIDVVYLGF 372
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A7S0T501_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T501_9RHOD) HSP 1 Score: 210 bits (534), Expect = 2.160e-58 Identity = 125/272 (45.96%), Postives = 165/272 (60.66%), Query Frame = 3 Query: 45 KRIIFMRHAESEWNEVFNRGYGPW-FVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRG---GFTK-SSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGE-TPDEG-LAKELGGQV---TFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVV-AIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIVRGDYNGRAAYRIDPDSIVSVYGGF 827 K IF+RH ES+WNEVFNRG+ P FV RL+ SL E M+ T DS+FFDS LS+ GI Q E++ FL+ S S+ V+RG G ++ SSV+V SNLRR++ T L+TL RL++ ER + + LQE+TFNVDGI++ E TP G + L V + D N GTK++ GM RM F EWA + E VVV A GHSLY+R RNFLP + +H K KK+ NCG + F++ + YRIDP S+ +YGGF Sbjct: 13 KTFIFIRHGESDWNEVFNRGFNPASFVPRLIRSLFHELSMIPTTDSLFFDSSLSSTGITQAMEMVAFLESDS--------SDRTRVLRGDTDGSSQLSSVIVCSNLRRSLQTALLTLQARLKRTGERVRMMTCLQEVTFNVDGIALSKSREITPSMGEVGVHLPSDVLERSVDPTLNHGTKSIQSNGMIRMLEFLEWAFAQDEPVVVIAGGHSLYLRYMLRNFLPADSDHIGKSKKLSNCGALQFSMTSAQLDAAPMYRIDPRSLQVLYGGF 276
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Match: A0A7S0HZQ7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HZQ7_9EUKA) HSP 1 Score: 211 bits (538), Expect = 5.500e-58 Identity = 118/269 (43.87%), Postives = 166/269 (61.71%), Query Frame = 3 Query: 48 RIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREAMMLTTRDSVFFDSPLSNRGIEQTQELLRFLQKPSDNFSSPKVSEAVAVMRGGFTKSSVLVTSNLRRAIATGLITLWDRLRKGEERYLVHSALQEMTFNVDGISMLDKGETPDEGLAKELGGQVTFDAEFNTGTKALGHTGMKRMKAFSEWASQRPEDVVVAIGHSLYIRSFFRNFLPEEVEHFAKEKKIVNCGVVSFTIV----RGDYNGRAA-----YRIDPDSIVSVYGGF 827 RIIF+RH ES WN VFNRG+GP F+VRLV +++ E ++ DS F DSPLS+ G EQ L FL+ P P V+ G +S V+V+S LRRA AT I L DRL++ E L+HS+ QE++ N D +S+ + G+ P + EL ++ +D N G+K+LG GM R++ F+ WA++R E ++ GHSL+ + FF+ +LP+ +H K+KKIVNCG V FT+ RG GRA+ +RIDP SI +YGGF Sbjct: 89 RIIFIRHGESMWNLVFNRGFGPSFLVRLVKAVLYELYLIPFDDSCFLDSPLSDLGFEQCHSLQAFLRNPC---LDPAAQADFDVLTAGEGRS-VIVSSQLRRAAATAAIGLADRLKRTNEPILMHSSCQEISRNFDTLSITEAGKGPVLRGSVELERKLHYDGTANKGSKSLGFRGMHRIEDFAAWAAKRNESTIIVAGHSLWFKEFFKLYLPKAADHTCKKKKIVNCGAVGFTLQTASPRGVTLGRASDSSLRHRIDPTSISVIYGGF 353 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9894.24008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9894.24008.1 >prot_P-canaliculata_contig9894.24008.1 ID=prot_P-canaliculata_contig9894.24008.1|Name=mRNA_P-canaliculata_contig9894.24008.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=277bp MDASEVRIDDKSHRKRIIFMRHAESEWNEVFNRGYGPWFVVRLVHSLVREback to top mRNA from alignment at P-canaliculata_contig9894:3195..8393+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9894.24008.1 ID=mRNA_P-canaliculata_contig9894.24008.1|Name=mRNA_P-canaliculata_contig9894.24008.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5199bp|location=Sequence derived from alignment at P-canaliculata_contig9894:3195..8393+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9894:3195..8393+ >mRNA_P-canaliculata_contig9894.24008.1 ID=mRNA_P-canaliculata_contig9894.24008.1|Name=mRNA_P-canaliculata_contig9894.24008.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at P-canaliculata_contig9894:3195..8393+ (Pelvetia canaliculata dioecious)back to top |