mRNA_P-canaliculata_contig98893.24005.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: UPI0016756F07 (EamA family transporter n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016756F07) HSP 1 Score: 270 bits (689), Expect = 4.720e-88 Identity = 144/197 (73.10%), Postives = 165/197 (83.76%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAKGKGDLLVKVTEVS 591 L+LGERIG WR G+ALAF+GVVLIGLGAPPEAA GF LGI +AC AM+EA+GAI VKSVK+++PVQLL WFGI+GS VLWPL+L LE Q AF P+TRVNFGLAL+YSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGV GV+ILGE LTPI+++GAL+TI GI +IL RN+ + K KVTE S Sbjct: 107 LVLGERIGIWRTSGAALAFLGVVLIGLGAPPEAASEGFVLGIALIACGAMAEAVGAISVKSVKSISPVQLLVWFGIVGSIVLWPLSLFLEDGQTRAFNPETRVNFGLALIYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVIGGVVILGEKLTPIILLGALVTISGICVILWRNREEAKR----KVTESS 299
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: A0A8J3G299_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G299_9PROT) HSP 1 Score: 206 bits (524), Expect = 4.900e-63 Identity = 110/184 (59.78%), Postives = 137/184 (74.46%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAK 552 +ILGERI W +G +LAFVG V+IGL P EAAG FA+GI MACAA+SEA GAI VK + + P QL+AWF ++G+ VLWPLT+++ET Q + FAPD R F A++YSVLLVS+VAHGSYYWLL RLPI V PSGL+TTVIGVA G+LIL E L+ L VG IT+ G+AI++ R + Sbjct: 107 IILGERIKGWSWLGISLAFVGAVIIGLAGPGEAAGPLFAVGIVMMACAALSEACGAIAVKLTRNIKPAQLVAWFAVVGTIVLWPLTVLIETDQTAVFAPDIRWKFAAAVLYSVLLVSIVAHGSYYWLLSRLPIQVVTPSGLLTTVIGVAGGLLILKEPLSIGLTVGIAITLTGVAIVIWRGNRR 290
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: UPI0003FFA11D (EamA family transporter n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FFA11D) HSP 1 Score: 196 bits (497), Expect = 4.730e-59 Identity = 107/189 (56.61%), Postives = 137/189 (72.49%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAKGKGDL 567 ++ ++IG +++ G LAF+GV++I P E AG F LGI M AAM EA+GA+ VK VK+V P+QLLAWF +IGSAVLWPL+L++E Q AFAP+ R F +AL YS LLVS+VAHGSYYWLLQRLPI+ V+ +GLMTTVI V A ++LGE LTP L++G LIT+ GIA+IL R K L Sbjct: 106 IVFKDKIGVYKLAGILLAFIGVIIIASAKPDETAGPYFLLGILLMVGAAMCEAVGAVLVKFVKSVGPLQLLAWFALIGSAVLWPLSLLVEDNQWEAFAPENRKTFIMALAYSALLVSVVAHGSYYWLLQRLPIYIVSSTGLMTTVIAVIASAVLLGEELTPNLLLGGLITLGGIALILARKNRAAKAAL 294
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: UPI00035E36C9 (DMT family transporter n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00035E36C9) HSP 1 Score: 195 bits (495), Expect = 1.090e-58 Identity = 102/185 (55.14%), Postives = 131/185 (70.81%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAKG 555 + LGE +G RI G +AFVG V+I P EAAG F GIG M C A SEA+GA VK VK V P++LLAW ++G VLWPLTL +E+ Q+ A +PD R+NFG+AL+YS LLVSLVAHGSYYWLLQRLP+ VA +GLMTT+I VAA +IL E ++ ++G ++ + G+ +IL R K KG Sbjct: 106 MFLGETVGAKRISGIVVAFVGAVIIATAKPDEAAGPYFLFGIGLMVCGAFSEAMGAFFVKKVKGVKPMELLAWCAVMGVVVLWPLTLAIESNQIDAISPDNRLNFGMALLYSSLLVSLVAHGSYYWLLQRLPLSIVAGTGLMTTLIAVAASTIILRETMSVPFIIGGVMILFGVTLILLRTKRKG 290
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: UPI0004E19931 (DMT family transporter n=1 Tax=Parvularcula oceani TaxID=1247963 RepID=UPI0004E19931) HSP 1 Score: 147 bits (370), Expect = 6.660e-40 Identity = 90/191 (47.12%), Postives = 119/191 (62.30%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGL--ALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAKGKGDL 567 L LGER+G RI G A+A GV LI G+ E LG + AA SEA GAI VK ++ V P++LL+WFG++G V L+LI ET Q +AF P+ VN+G+ AL YSV + S+ AH SYY+L+QR P+ VA SGLM +V V GVL+LGE LT + G +T+ G+A IL R + + DL Sbjct: 105 LFLGERVGWRRITGMAVALAGVALIATGSSEETGSRNLPLGALCILLAATSEAAGAIFVKKIEGVKPLELLSWFGVVGFFVTGILSLIFETGQRAAFVPE--VNWGVVGALAYSVFVASIFAHASYYFLIQRAPVSQVASSGLMASVFAVGFGVLLLGETLTVRFLFGGAMTLAGVAFILMRQERTKRADL 293
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: A0A371REJ8_9PROT (Uncharacterized protein n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371REJ8_9PROT) HSP 1 Score: 143 bits (360), Expect = 4.190e-38 Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLI------GLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRN 543 + L ER+G RI+G+ LA VG+++I GLG P+ + LG + C A+SEA GAI VK + A+ P+Q+LAWFG +G+ W TL+ E Q + R N LA++YS ++ S+ H SYYWLLQR+ + +AP+GLMTTV VA GV +LGE T L GAL+T+ G+AII+ R+ Sbjct: 105 IFLHERVGWRRIVGATLAIVGILIIISGGDAGLG--PD---DRLFLGGLLVMCGALSEAAGAILVKKIDAIAPLQMLAWFGAVGAVSCWVFTLLFEQNQFDFLSEAGRTNVFLAVLYSAVIASIFGHSSYYWLLQRVDVSQIAPAGLMTTVFAVAGGVFLLGETFTLRLAAGALVTMTGVAIIVVRS 286
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: A0A850SC11_9PROT (DMT family transporter n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A850SC11_9PROT) HSP 1 Score: 140 bits (354), Expect = 1.760e-37 Identity = 82/186 (44.09%), Postives = 116/186 (62.37%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFA-PDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAKG 555 + L ER+G R +G ALAFVGV ++ L A LG+ +A A++E+ GAI VK + P +LLAWF ++G+ LWP TL LE + A A D V FG A+ YS + S+ H +YYWLLQRLP+ VAPS L+TT++G+A ++ LGE LT ++GAL + G+A++L R+ KG Sbjct: 105 VFLNERVGWRRTLGIALAFVGVAIVALTRDQSAEAR-IGLGVMLVAGCALTESFGAILVKRISGFRPHELLAWFALVGAVFLWPATLALEPEALEALARADKAVAFG-AVAYSAIAASIFGHTAYYWLLQRLPVSVVAPSTLLTTLLGIAFSMVFLGERLTTPFLIGALTALAGVAVVLFRSAQKG 288
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: E0TGQ5_PARBH (Integral membrane protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) TaxID=314260 RepID=E0TGQ5_PARBH) HSP 1 Score: 134 bits (338), Expect = 5.110e-35 Identity = 84/195 (43.08%), Postives = 117/195 (60.00%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAG-NGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVN-FGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAKGKGDLLVKV 579 L+LGER+G R G+ALA +G V+I G +G LG + A EA+GAI +K V V+ +QLLAWFG++G V W LT++L Q+ P+ F AL+YS + S++ H SYYWLLQR+ + +APSG++TTVI V AG L L E LT L+VG +T+LG+ II R+ K + + V Sbjct: 105 LLLGERVGWRRGTGAALAVLGAVIIVTGEGEAMSGATNLPLGAVLLIAGAFCEALGAILIKRVHGVSALQLLAWFGVVGGVVSWGLTIVLIGDQVPDAIPNLATGGFVSALIYSAIGASIMGHASYYWLLQRVDVTVLAPSGVLTTVIAVTAGTLFLDEPLTARLIVGGALTLLGVGIIAIRSAKKATTEASLPV 299
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: A0A8J2Y6U9_9PROT (Membrane protein n=2 Tax=Aquisalinus TaxID=1795639 RepID=A0A8J2Y6U9_9PROT) HSP 1 Score: 132 bits (332), Expect = 2.770e-34 Identity = 83/184 (45.11%), Postives = 110/184 (59.78%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRNKAK 552 + L ERIG RI G +A GV LI L E G+ LG+ + A SEA GAI VK ++ V P++LL WF I GSA LW TL LE Q++ + F AL ++V S+ H +YYWL+QRLP++ V+ S L+ TVI VA GV ILGE +T +VG L+T+ G+ +IL R K K Sbjct: 106 VFLKERIGLPRIAGIVIAIAGVGLIALS--QERDGDTSMLGVALLVAAMASEATGAIIVKKIEGVKPLELLGWFAIFGSAFLWTATLTLERDQIAVLTGENIWPFLAALSFTVFGASIFGHTTYYWLIQRLPVNQVSSSTLLATVIAVAGGVFILGEPVTWQFIVGGLMTLGGVGVILIRTKDK 287
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Match: A0A7Y3RLQ0_9PROT (DMT family transporter n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RLQ0_9PROT) HSP 1 Score: 129 bits (323), Expect = 6.370e-33 Identity = 73/181 (40.33%), Postives = 109/181 (60.22%), Query Frame = 1 Query: 1 LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMSEAIGAIGVKSVKAVNPVQLLAWFGIIGSAVLWPLTLILETRQMSAFAPDTRVNFGLALMYSVLLVSLVAHGSYYWLLQRLPIHTVAPSGLMTTVIGVAAGVLILGEVLTPILVVGALITILGIAIILRRN 543 + LGE++G RI G +A +GV++I A FALG + +EA GAI VK + V P+ LLAW ++GS V + +L Q + + D+ L+L+YSVL+ S+ H SYYWLL+R+P+ +APSGL+ T+ V GVL+LGE LT L++GAL+ + G+ ++L R Sbjct: 105 VFLGEKVGWKRISGIGVALIGVLIIATAEGDGEASQNFALGALLIVLGCTAEATGAIFVKKIDGVTPLGLLAWMAVVGSVVCFVPAALLTDNQFAWISSDSFTPVTLSLLYSVLVASVFGHTSYYWLLKRVPLSIIAPSGLLITLFAVVFGVLLLGEELTIRLILGALLVVSGVGVVLVRG 285 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98893.24005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98893.24005.1 >prot_P-canaliculata_contig98893.24005.1 ID=prot_P-canaliculata_contig98893.24005.1|Name=mRNA_P-canaliculata_contig98893.24005.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=198bp LILGERIGPWRIMGSALAFVGVVLIGLGAPPEAAGNGFALGIGFMACAAMback to top mRNA from alignment at P-canaliculata_contig98893:462..1055- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98893.24005.1 ID=mRNA_P-canaliculata_contig98893.24005.1|Name=mRNA_P-canaliculata_contig98893.24005.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at P-canaliculata_contig98893:462..1055- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98893:462..1055- >mRNA_P-canaliculata_contig98893.24005.1 ID=mRNA_P-canaliculata_contig98893.24005.1|Name=mRNA_P-canaliculata_contig98893.24005.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at P-canaliculata_contig98893:462..1055- (Pelvetia canaliculata dioecious)back to top |