mRNA_P-canaliculata_contig98865.24003.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI) HSP 1 Score: 107 bits (268), Expect = 7.810e-26 Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSFHQGQQG 165 +VTNDLYRDH KG++GRKKADAARRWIK+HSISYTFVGDEFFPNPDFSFHQ G Sbjct: 1539 VVTNDLYRDHVKGIEGRKKADAARRWIKAHSISYTFVGDEFFPNPDFSFHQDGNG 1593
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 6.600e-17 Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147 +VTND YRDH + G KK +AARRW+K H+ISYTFVGDEF PNPDF F Sbjct: 1178 VVTNDQYRDHYAALQGAKKREAARRWVKGHTISYTFVGDEFMPNPDFQF 1226
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A485LSN2_9STRA (Aste57867_25204 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSN2_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.320e-14 Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147 LVTNDL+RDH + + G K+ A R W+K+H IS+T+VGDEFFPNPDF F Sbjct: 910 LVTNDLFRDHLENIKGGKQKGAMREWLKNHRISFTWVGDEFFPNPDFRF 958
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A6G0XRT9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRT9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.600e-13 Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147 LVTND++RDH + + + +A R W+KSH IS+T+VGDEFFPNPDF F Sbjct: 862 LVTNDMFRDHVENIKSNAQRNAMRDWLKSHRISFTWVGDEFFPNPDFRF 910
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A1V9YYR1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYR1_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 7.670e-13 Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVD--GRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147 +VTNDL+RDH +G++ G+KKA A R+W+ +H IS+T+VGDEFFPNPDF F Sbjct: 1140 VVTNDLFRDHVEGMNASGQKKA-AMRQWLAAHRISFTWVGDEFFPNPDFRF 1189
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A7S2CKB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKB1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.490e-12 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147 +VTND+YRDH + ++ +W++SH ISYTFVGDEF PNPDF F Sbjct: 151 VVTNDMYRDHVGKITNHRERKECLQWMRSHLISYTFVGDEFLPNPDFKF 199
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A067CRV2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRV2_SAPPC) HSP 1 Score: 68.6 bits (166), Expect = 4.970e-12 Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSFHQ 153 +VTNDL+RDH G+ G + AA R+W+ +H IS+T+VGDEF PNPDF F Q Sbjct: 835 VVTNDLFRDHVDGLQGTGQQKAAMRQWLSAHCISFTWVGDEFLPNPDFRFPQ 886
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A1V9YL36_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL36_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 4.980e-12 Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 147 +VTNDL+RDH G+ G AA R+W+ SH IS+T+VGDE+FPNPDF F Sbjct: 843 VVTNDLFRDHVDGMTGTGAQKAAMRQWLNSHRISFTWVGDEYFPNPDFRF 892
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: W4FWI5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWI5_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 4.980e-12 Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147 LVTNDL+RDH + K A R W+K+H IS+T+VGDEF PNPDF F Sbjct: 909 LVTNDLFRDHLDNIKPSHKRGAMRDWLKAHRISFTWVGDEFLPNPDFRF 957
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: T0QIU5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIU5_SAPDV) HSP 1 Score: 68.2 bits (165), Expect = 6.800e-12 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 1 LVTNDLYRDHGKGVDGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 147 +VTNDL+RDH G+ G + AA R+W+ +H IS+T+VGDEF PNPDF F Sbjct: 849 VVTNDLFRDHVDGLQGNGQTKAAMRQWLSAHCISFTWVGDEFLPNPDFRF 898 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98865.24003.1 >prot_P-canaliculata_contig98865.24003.1 ID=prot_P-canaliculata_contig98865.24003.1|Name=mRNA_P-canaliculata_contig98865.24003.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=61bp LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSFHback to top mRNA from alignment at P-canaliculata_contig98865:350..532+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98865.24003.1 ID=mRNA_P-canaliculata_contig98865.24003.1|Name=mRNA_P-canaliculata_contig98865.24003.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at P-canaliculata_contig98865:350..532+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98865:350..532+ >mRNA_P-canaliculata_contig98865.24003.1 ID=mRNA_P-canaliculata_contig98865.24003.1|Name=mRNA_P-canaliculata_contig98865.24003.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at P-canaliculata_contig98865:350..532+ (Pelvetia canaliculata dioecious)back to top |