mRNA_P-canaliculata_contig9873.23982.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE) HSP 1 Score: 327 bits (838), Expect = 8.080e-100 Identity = 294/627 (46.89%), Postives = 338/627 (53.91%), Query Frame = 3 Query: 138 MGDTRAWFEGELRRMLGFDEVEEIARFALDSYSASQAVELRQYLEQFLGQSHEVRKLCDELSSRRSAAAPLSASKTGSARRQHASAGEDFWGAGGSSGAATRAATAPGGG-VRGQEHERKPAAKGRAKGKAYKKST-EEDFWGGGTTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGKLPTKPEPTGASSKSSARQEHSMSSAAASAGKLRGARAKGRGGKVAA------------------------------GAQTPGPAKSVPSATNVSEQTKKTATWSGVTCLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPG------DGQAGGQAQDENEQGERLGAAAEEIARVGGVGDDTGGAFAGVDPRNGPRKADQDPA---NHWPSVENTGLRGRAKEVYDVMRANLEKQGRR-RPGGNSTKR-GGFRVA----EKSRVSLWRVQHDVDSDDVVRQNQVGGSNRGVGVGHEEIDFERFGPIDEL 1877
M TRAWFEGELRRMLGFDEVEEIARFALDS+ SQ VELRQYLEQFLGQS + L TA GG G+ +GK Y+K+ EEDFWGGGTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G ++ A+ G + G R + ++ A+T +++P+ V E WSGVTCLCMGK HD +TNCT CGKIACV+EGGFGCSFCG LP TGREPR + G +G+ AA SAALKEAL RKD+LLLFDRTSASRTRVLDDQGDYFTSHNWLS+ ERE+ EA+EKA RD+AA RRGARRQVK+SIDIMGRRVIET PG DG G DE+ + G + + + +AD A N S+ENTGLRGRAKEVYDVMRANL+K+ RR RPGG K G R+ E SRV+LWRVQHDVDSDD++RQ+Q G F +F P DEL
Sbjct: 1 MAKTRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLL----------------------------------------------TAEGGNNXXXXXXXXXXXXXGKGRGKVYQKAAVEEDFWGGGTTSGRVKPASAPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAGGAT------------GTATKGDVGGGRVSSKQPLASSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTTALPETLPAPAPVPE-------WSGVTCLCMGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPR---SATSGGVDGAAGAAA-----PHSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKARRDDAASRRGARRQVKMSIDIMGRRVIETH-PGEDGGLADGGGGEXXADEDASRKTQGVSLDFGSXXXXXXXXXXXXXXXXXXXXXAEEADTPGAGNGNQRLSLENTGLRGRAKEVYDVMRANLDKKSRRQRPGGAGGKAVAGSRIVGAVPEASRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADEL 552
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: D7FU14_ECTSI (Similar to thyroid hormone receptor interactor 4 isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU14_ECTSI) HSP 1 Score: 291 bits (746), Expect = 2.110e-89 Identity = 187/336 (55.65%), Postives = 220/336 (65.48%), Query Frame = 3 Query: 954 MGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPGDGQA---GGQAQDENE-----QGERL---------GAAAEEIARV---GGVGDDTGGAFAGVDPRNGPRKADQDPANHWPSVENTGLRGRAKEVYDVMRANLEKQGRRR-PGGNSTKR-GGFRVA----EKSRVSLWRVQHDVDSDDVVRQNQVGGSNRGVGVGHEEIDFERFGPIDELGC 1883
MGK HD +TNCT CGKIACV+EGGFGCSFCG LP TGREPR + + G+T QSAALKEAL RKD+LLLFDRTSASRTRVLDDQGDYFTSHNWLS+ ERE+ EA+EK RD+AA RRGARRQVK+SIDIMGRRVIET++PG+G+A GG+ + +++ QG L G AA A G +G++ G + AG NG N S+ENTGLRGRAKEVYDVMRANL+K+ RRR P G K G R+ E SRV+LWRVQHDVDSDD++RQ+Q G F +F P DEL C
Sbjct: 1 MGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSAASGGVDGAAGATA--------PQSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKVRRDDAASRRGARRQVKMSIDIMGRRVIETQDPGEGRADGGGGEGEADDDASKKTQGVSLDFGSSSAAGGGAAGSSAXXXXXGSIGEEAGTSGAG----NG---------NQRLSLENTGLRGRAKEVYDVMRANLDKKSRRRRPRGAGGKAVAGSRIVGAVPETSRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADELAC 314
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: UPI00077AD339 (activating signal cointegrator 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AD339) HSP 1 Score: 100 bits (248), Expect = 2.260e-18 Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDS--EGSTVAAVETA-DPTQSAA---LKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKE 1412
C C+G+ H I NC CG+I C++EG C FCG+ + T + + +SK+ E ++E A + T S A L+EA+ K+KL+ FD++ RT+V+DD+ DYF S + WLS+ ER+ KE+ R++ R G+RRQ+K+++D GRRVI+ KE
Sbjct: 134 CECLGQKHQLINNCIECGRIVCMQEGSGPCYFCGALVCSTEEKEILAQKSKKSQKLYEKLLTRSIEDASEETLSVADKGLQEAIAHKNKLIEFDKSGVRRTKVIDDECDYFASDSNRWLSKRERDTLRKKEEDLREK---RHGSRRQMKVTLDFAGRRVIDEKE 294
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A7RPW2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPW2_NEMVE) HSP 1 Score: 98.2 bits (243), Expect = 9.080e-18 Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3 Query: 945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSAL------PVTGREPRRSGE------SKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
C C+G+ H + NCT CG+I C +EG C FCG+ + + RE ++S + S+ E + + T++ L +A+ K+KLL +D+TS RT+V+DD+ DYF++ + WLS++E+E+ KE+ R A+R G+RR +K+++D GRRV+E
Sbjct: 125 CECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCSRAEQEIIARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQGLDKAIAHKNKLLEYDKTSVCRTKVIDDECDYFSTDGNKWLSKKEKEQLTVKEEELR---AKRHGSRRDMKITLDFAGRRVVE 288
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A0C9R7G9_9HYME (Trip4_1 protein n=2 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9R7G9_9HYME) HSP 1 Score: 97.1 bits (240), Expect = 1.940e-17 Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 3 Query: 939 VTCLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHN--WLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKE 1412
V C C K H I NC CG+I C +EG C FCG + ++ S SK D+ + + + K AL ++DKLL FDR SA RTRV+DD+ DY+ S N WLS+EER E E +E ++ ++ G+R + K ++DI GR+V+E ++
Sbjct: 132 VKCDCEAKTHKLINNCLTCGRIVCEQEGAGPCFFCGELVCTPNQQNVLSTNSKNSDNLYNKL--------MEQKPSKAALKQRDKLLEFDRNSAKRTRVIDDESDYYQSSNSVWLSKEERAEMERREAEMKE---RKYGSRLEKKFTVDIFGRQVVEEED 280
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: E9GBD9_DAPPU (ASCH domain-containing protein n=4 Tax=Daphnia TaxID=6668 RepID=E9GBD9_DAPPU) HSP 1 Score: 92.8 bits (229), Expect = 4.440e-16 Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 3 Query: 909 QTKKTATWSGV-TCLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPR-RSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFT--SHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
Q K+T T G C C H + NC CG++ C +EG C FC + +E +S + ++ S ++ P A A+ K+KLL FDRTS RTRV+DD+ DYF S+ WL+ ++R+ KEK RD R G+RRQ+K+++D GR+VIE
Sbjct: 116 QAKETITLPGQHKCECQASKHSLVRNCLECGRVICAQEGPGPCVFCTENMSACEKEALLQSNNAPAQRTKQSGRRFLDGTAPLPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADSNKWLNPKQRDALRTKEKELRDS---RHGSRRQIKVTLDFAGRQVIE 281
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A6P8GZP8_ACTTE (activating signal cointegrator 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8GZP8_ACTTE) HSP 1 Score: 92.4 bits (228), Expect = 6.500e-16 Identity = 60/166 (36.14%), Postives = 92/166 (55.42%), Query Frame = 3 Query: 945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSA------------ALKEALGRKDKLLLFDRTSASRTRVLDDQGDYF-TSHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
C C+ + H I NCT CG+I C +EG C FCGS + ++ + +SK+ + + +D + + A+ K+KLL FD+TSA RT V+DD+ DYF T+ WLS EER + E KE+ R++ R G+RR +K+++D GR+V+E
Sbjct: 134 CECLAQKHSLINNCTSCGRIVCEQEGEGPCYFCGSLVCTKAQKEILARDSKKSAKLLKQLMQQDFSDDVKKLQKXKNMSAQELEGYQRAVEHKNKLLEFDKTSARRTHVIDDEADYFSTNSKWLSTEERTKLEKKEEELREK---RHGSRRNMKVTLDFAGRKVVE 296
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A0N8D2Q7_9CRUS (Activating signal cointegrator n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8D2Q7_9CRUS) HSP 1 Score: 91.3 bits (225), Expect = 1.400e-15 Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = 3 Query: 945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGRE---------PRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
C C H I NC CG++ C +EG C FC +P +E P+RS +S +G +G T A + A T A+ K+KLL FDRTS RTRV+DD+ DYF + + WL+ ++R+ +KE+ R+ R G+RR +K+++D GR+VIE
Sbjct: 131 CECQASKHSLIRNCLECGRVICSQEGPGPCIFCTENMPANEKETYSQANKPAPQRSKQSGKGFLDG-TAALPDKAFTT-------AMAHKEKLLEFDRTSEHRTRVIDDESDYFNADGNKWLNPKQRDALRSKERELRES---RHGSRRGMKVTLDFAGRQVIE 283
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: UPI00106C9987 (activating signal cointegrator 1-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C9987) HSP 1 Score: 90.9 bits (224), Expect = 1.960e-15 Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALK--EALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHN-WLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETK 1409
C C+G+ H + NC CG+I C +EG C FCG + + SKRG + A ++ LK +A KD+LL +DRTS RT+V+DD+ DYF S + WLS++ER+ KEK + + + G+RR K+++D GR++IE K
Sbjct: 137 CECLGQKHSLVNNCLQCGRIVCEQEGSGPCYFCGEVVCTAEEREVLAKNSKRGQKLKEKLLESWNAKASEDEELKRRKATELKDRLLEYDRTSVRRTKVIDDESDYFASDSKWLSKKERKI--LKEKEDKLQKL-KHGSRRDKKVTLDFAGRKIIEEK 291
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: UPI0001CB9C0C (activating signal cointegrator 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9C0C) HSP 1 Score: 90.5 bits (223), Expect = 3.240e-15 Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 3 Query: 945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSA------LPVTGREPRRSGESKR---GDS--EGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKEP 1415
C C H + NC CG++ C +EG C FCGS L + R +S + R GD + + VE + L +A+ K+KL+ +D+TSA RT V+DD+ DYF + + WLS++ERE + +E R+ QR G+RR K+++D GR+VIE EP
Sbjct: 178 CECQAHRHRLVNNCIKCGRVVCDQEGAGPCFFCGSLVCSSEQLEILARNSHKSEKLMRKLMGDVIVKDKALGTVEKDSSKLCSGLDKAIMHKNKLIEYDKTSARRTHVIDDESDYFATDTNRWLSKKEREVLKNREDELRE---QRHGSRRGKKITLDFAGRKVIEDNEP 344 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9873.23982.1 >prot_P-canaliculata_contig9873.23982.1 ID=prot_P-canaliculata_contig9873.23982.1|Name=mRNA_P-canaliculata_contig9873.23982.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=584bp MGDTRAWFEGELRRMLGFDEVEEIARFALDSYSASQAVELRQYLEQFLGQback to top mRNA from alignment at P-canaliculata_contig9873:2241..6933+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9873.23982.1 ID=mRNA_P-canaliculata_contig9873.23982.1|Name=mRNA_P-canaliculata_contig9873.23982.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4693bp|location=Sequence derived from alignment at P-canaliculata_contig9873:2241..6933+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9873:2241..6933+ >mRNA_P-canaliculata_contig9873.23982.1 ID=mRNA_P-canaliculata_contig9873.23982.1|Name=mRNA_P-canaliculata_contig9873.23982.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3504bp|location=Sequence derived from alignment at P-canaliculata_contig9873:2241..6933+ (Pelvetia canaliculata dioecious)back to top |