mRNA_P-canaliculata_contig9873.23981.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI) HSP 1 Score: 318 bits (816), Expect = 4.330e-100 Identity = 196/406 (48.28%), Postives = 243/406 (59.85%), Query Frame = 1 Query: 40 LAGCGDSSFCQLPCECPCYSWRRGVTDGNEGPCAPVQQGDT----LMISGVSCGTSVAVALVCPPGTGRGRASV--------FEWGTCMYGERLSSAAKTGAEKPGTKPSDHQIGLLPSLRHPVEIYPLPLLQLRLRS-------IACGAHFAVAAVETGGCIAWGGGRE-LRALGRGGCDSCSSSTCMSTGKPSMT-LSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHG--SCTPMMVQFPTVASNN------IAANRENSSEA-----SDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 L G GDSSFCQ+PC P SW R D N P + D IS ++CG + +A V +++ EWGT +YGERLS+ +T + G + + L HP ++ L L L LRS IACGAHF VA++E GGCI+WGGGRE RALGRG C +C C + P+ LS P DWV +PLG GG +V LAAGDDH +AV DG+AWAWGRGDCGQLG G+ + G +C PM VQ P+ AS +A+ ++ A S + + L ACGRDHSA++T DGR+WTFGSGL+GQLG GTVGE + P+VVDAL GVGTMR DGSFTG+ +VACGAWHTAA+STTGD+YTWGWARFG Sbjct: 8 LVGVGDSSFCQIPC--PWASWSRQTADANSKS-HPSRNEDVRRVQTKISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLST--ETSVPQQGDERNHASF-----LNHPAQV-ALSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFG 400
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE) HSP 1 Score: 307 bits (786), Expect = 1.690e-95 Identity = 200/427 (46.84%), Postives = 240/427 (56.21%), Query Frame = 1 Query: 40 LAGCGDSSFCQLPCECPCYSWRRGVTDGNEGPCAPVQQGDTLM-----ISGVSCGTSVAVALV-------------------CPPGTGRGRASVFEWGTCMYGERLSSAAKTGAEKPGTKPSDHQIGLLPSLRHPVEIYPLPLLQLRLRS-------IACGAHFAVAAVETGGCIAWGGGRE-LRALGRGGCDSCSSSTCMSTGKPSMT-LSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGS-CTPMMVQFPTVASNN------IAANRENSSEA--------------SDNATNP-VLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 L G GDSSFCQ+PC P SW R D +G D + IS ++CG + +A V PP A + EWGT +YGERLS+ +T + G + + L HP + L L LRS IACGAHF VA++E GGCI+WGGGRE RALGRG C +C C P+ LS P + DWV +PLG GG +V LAAGDDH +AV DG AWAWGRGDCGQLG G+ G GS C PM VQ P+ AS +A+ ++ A D P L ACGRDHSA++T DGR+WTFGSGL+GQLG GTVGE + P+VVDAL GVGTMR DGSFTG+ +VACGAWHTAA+STTGD+YTWGWARFG Sbjct: 8 LVGVGDSSFCQIPC--PWASWSRQTAD-EKGKSHGSSSNDDVCRVQTKISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPP------AYLLEWGTGLYGERLST--ETSVPQQGDERNQESF-----LNHPAPV-AFSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSPDGVDYDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFG 415
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: D0N7V0_PHYIT (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7V0_PHYIT) HSP 1 Score: 108 bits (271), Expect = 4.630e-24 Identity = 80/250 (32.00%), Postives = 117/250 (46.80%), Query Frame = 1 Query: 406 RLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 R +++ACG++ A+ ++G +AWG +SS ++ M +P ++ V E+V +AAG H++AV + G WAWG GQLG G + TP +V P V A+ +A G HSAV+ G ++TFG GLY QLG T + +P +VDAL+G+ + I VACG WHTAA++ +GDLYTWGW + G Sbjct: 40 RCKAVACGSNHALVLTDSGRVVAWGW---------------NSSGQVAAASKEMVQTPTIVEFPKAV---------EIVAVAAGGMHSLAVDSCGRVWAWGCNTYGQLGIGCEMDKLH------TPSLVALPA----------------------DVHAQRIAAGWAHSAVILTSGEIFTFGWGLYNQLGHSTT-QSELQPVIVDALQGLDS--------NIVQVACGNWHTAALTESGDLYTWGWGKDG 228
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.230e-23 Identity = 83/252 (32.94%), Postives = 116/252 (46.03%), Query Frame = 1 Query: 403 LRLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAV-CADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 L +RSIACG + TG C+ WG A KP + SP + V +AAG+ H++A+ A G ++WG GQ ++ + A+ G P +R +A G HSAV++ DG L+TFG GLY QLG GT + P+ V +LEGVG ++ + FTG++ VACGAWHTAA++TTGD+YTWGW + G Sbjct: 66 LSVRSIACGGSHVLLCTTTGECLWWGDQFNTNAT---------------QPKPVVFPSP----------------DVFVTQVAAGEAHSLALDAATGRVFSWGSNAFGQC---SVTKDEAIVTGVPVPQ-------------------------------SRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTT-NNVFTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHG 250
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA) HSP 1 Score: 108 bits (271), Expect = 3.660e-23 Identity = 83/252 (32.94%), Postives = 116/252 (46.03%), Query Frame = 1 Query: 403 LRLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAV-CADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 L +RSIACG + TG C+ WG A KP + SP + V +AAG+ H++A+ A G ++WG GQ ++ + A+ G P +R +A G HSAV++ DG L+TFG GLY QLG GT + P+ V +LEGVG ++ + FTG++ VACGAWHTAA++TTGD+YTWGW + G Sbjct: 66 LSVRSIACGGSHVLLCTTTGECLWWGDQFNTNAT---------------QPKPVVFPSP----------------DVFVTQVAAGEAHSLALDAATGRVFSWGSNAFGQC---SVTKDEAIVTGVPVPQ-------------------------------SRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTT-NNVFTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHG 250
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: G4YY59_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY59_PHYSP) HSP 1 Score: 105 bits (261), Expect = 3.850e-22 Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 1 Query: 406 RLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 R ++ACG++ +A ++G +AWG +A G D T + P +++V +AAG H++A+ + G WAWG + GQLG + + QH +P V + R +A G HSA+++ G ++TFG GLY QLG G+ + +P VVDAL+GV + VACG WHTAA++ +GDLYTWGW + G Sbjct: 79 RCSAVACGSNHVLALTDSGRVVAWGWNASAQAAVSAGEDVVRVPTVVEFPTP-----------------------VQIVQVAAGGMHSLALDSSGGVWAWGCNEFGQLGINSEV---ETQH---SPRRVALSA----------------------EIRVRDIAAGWAHSALVSTSGEVFTFGWGLYNQLGHGST-QNEVEPVVVDALQGVDSEAVQ--------VACGNWHTAALTASGDLYTWGWGKDG 268
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A329S126_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S126_9STRA) HSP 1 Score: 106 bits (264), Expect = 6.090e-22 Identity = 83/250 (33.20%), Postives = 123/250 (49.20%), Query Frame = 1 Query: 406 RLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQ-PLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQ-HGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWAR 1149 R +++ACG++ +A ++G +AWG + G+ + C+ T VV+ P+ A L++V +AAG H++AV + G WAWG GQLG IG+ Q H TP +V P V + +A G HSA+++ G ++TFG GLY QLG G+ ++ +P VVDAL G+ + I VACG WHTAA++ +GDLYTWGW + Sbjct: 77 RCKAVACGSNHVLALTDSGRIVAWG----WNSSGQVAAAAVEKVVCVPT-----------------VVEFPIEA--LQIVEVAAGGMHSLAVESSGRVWAWGCNVYGQLG----IGSETEQLH---TPRLVALPA----------------------DVRVQHIAAGWAHSALISMSGEVFTFGWGLYNQLGHGSTQDKL-QPVVVDALRGLDS--------DIVQVACGNWHTAALTASGDLYTWGWGK 265
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A0W8CI08_PHYNI (E3 ubiquitin-protein ligase HERC4 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CI08_PHYNI) HSP 1 Score: 105 bits (262), Expect = 8.640e-22 Identity = 89/301 (29.57%), Postives = 131/301 (43.52%), Query Frame = 1 Query: 247 VFEWGTCMYGERLSSAAKTGAEKPGTKPSDHQIGLLPSLRHPVEIYPLPLLQLRLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWAR 1149 V WG YGER P +H+ PV++ + R +++ CG++ +A ++ IAWG R G+ ++ +V P+ +E+V +AAG H++AV + G WAWG GQLG + QH TPM+V P V + VA G HSA+++ G ++TFG GLY QLG G+ + +P +VDAL G+ + I VACG WHTAA++ +GDLYTWGW + Sbjct: 47 VVGWGKAFYGER---------------PDEHK-------NVPVKLN----VPERCKTVGCGSNHVLALTDSSRVIAWGWNRS--------------------GQVGAAAIEDVVRVPTFVKFPIE--DVEIVEVAAGGMHSLAVDSRGRVWAWGCNTYGQLGIDFEVKQ---QH---TPMLVALPA----------------------DVRVQHVAAGWAHSALISTSGEVFTFGWGLYNQLGHGST-QNEHEPVLVDALRGLDS--------DIVQVACGNWHTAALTASGDLYTWGWGK 262
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A0P1AA17_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA17_PLAHL) HSP 1 Score: 104 bits (259), Expect = 1.990e-21 Identity = 66/173 (38.15%), Postives = 92/173 (53.18%), Query Frame = 1 Query: 637 VVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 +V +AAG H++A+ +DG WAWG GQLG G + TP +V+ P AN V A+S+A G H+A+++ G ++TFG GLY QLG G+ +P V+AL G+ + I+ VACG WHTAA++ +GDLYTWGW R G Sbjct: 110 IVEVAAGGMHSLALDSDGRVWAWGCNAYGQLGIGVR------EKQLTTPALVEMP--------AN--------------VQAQSIAAGWAHNAIISTSGEVFTFGWGLYNQLGHGST-HNELQPLAVEALRGLDS--------DIAQVACGTWHTAALTASGDLYTWGWKRDG 245
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A225UDK4_9STRA (Regulator of chromosome condensation (RCC1) (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UDK4_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.870e-21 Identity = 65/175 (37.14%), Postives = 93/175 (53.14%), Query Frame = 1 Query: 631 LEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155 + +V +AAG H++AV + G WAWG GQLG G+ + + H TP +V P+ V A+ VA G HSA+++ G + +FG GLY QLG G+ + +P +VDAL+G+ + I VACG WHTAA++ +GDLYTWGW + G Sbjct: 32 VRIVEVAAGGMHSLAVDSCGRMWAWGCNTFGQLGVGSDV---PMLH---TPTLVVLPS----------------------DVRAQHVAAGFAHSAMISTKGEMLSFGWGLYNQLGHGST-QNEHQPIIVDALQGLDS--------DIVQVACGNWHTAALTQSGDLYTWGWGKDG 169 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9873.23981.1 >prot_P-canaliculata_contig9873.23981.1 ID=prot_P-canaliculata_contig9873.23981.1|Name=mRNA_P-canaliculata_contig9873.23981.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=376bp MARLAGCGDSSFCQLPCECPCYSWRRGVTDGNEGPCAPVQQGDTLMISGVback to top mRNA from alignment at P-canaliculata_contig9873:618..2085- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9873.23981.1 ID=mRNA_P-canaliculata_contig9873.23981.1|Name=mRNA_P-canaliculata_contig9873.23981.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-canaliculata_contig9873:618..2085- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9873:618..2085- >mRNA_P-canaliculata_contig9873.23981.1 ID=mRNA_P-canaliculata_contig9873.23981.1|Name=mRNA_P-canaliculata_contig9873.23981.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at P-canaliculata_contig9873:618..2085- (Pelvetia canaliculata dioecious)back to top |