mRNA_P-canaliculata_contig98693.23978.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98693.23978.1
Unique NamemRNA_P-canaliculata_contig98693.23978.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98693.23978.1 vs. uniprot
Match: A0A6H5KWJ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.420e-28
Identity = 87/210 (41.43%), Postives = 114/210 (54.29%), Query Frame = 1 
Query:   25 GLRFWVAGHSLGGAVAISVILFLHDIPFTAKYIEDYENKFDLQPNHSTTFNRKVADPWSA--ASKKGSGRPYELSGGHVFNPGASLDVNDNLITSFLGVGGGGLFGAQTFGGMAMAGIFG---VILVFVG-----LIEAFEEHTYGGTDSRPDKGVTTHHILGDLLSCSYRIGKEKSYMPKSKIAF-LVYWWLP-KNFKSWGPHSMENFV 618
            GLRF V GHSLGG VA+ V++ LHDIP TA+           +PN  T + ++V   W+A  A+  G+  PYEL GGH+FNPGA   +   +       GG  + G    GG A+AG      +  V VG      I  +  HT   +D   DK VTTHHI+GD++S  +R+G EK+YMPK K A  L     P K  K WG HS+ NF+
Sbjct:  179 GLRFSVTGHSLGGTVAMGVMVLLHDIPTTAR----------RRPN-DTRYQQQVLGAWNAERANWSGAAAPYELVGGHIFNPGAWPGLVGPVA------GGSAVAGFWLTGGFAVAGAAATAAMCAVTVGSGCVLAIYLYRSHTERLSDP-VDKRVTTHHIIGDVVSGFFRLGTEKNYMPKDKRARRLATACSPGKIGKEWGCHSIANFL 370
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BLAST of mRNA_P-canaliculata_contig98693.23978.1 vs. uniprot
Match: D7FQN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.420e-12
Identity = 54/177 (30.51%), Postives = 84/177 (47.46%), Query Frame = 1 
Query:   16 DKGGLRFWVAGHSLGGAVAISVILFLHDIPFTAKYIEDYENKFDLQPNHSTTFNRKVADPWSA-ASKKGSGRPYELSGGHVFNPGAS---LDVNDNLITSFLGVGGGGLFGAQTFGGMAMAGIFGVILVFVGLIEAFEEHTYGGTDSRPDKGVTTHHILGDLLSCSYRIGKEKSYMP 534
            D   L+FWV GHSLGG+ A+ V+L L+D    A  +E        +      +  K+ D      ++  S RPYEL GG +FNPG+    + +++  +  F      GL     +  ++  G+F             ++    G   R D  V  HH+LGD +S ++R+GKE+SY P
Sbjct:  253 DTTCLKFWVTGHSLGGSTAMGVMLLLNDPVAMAATLEANAKTHKSRQQFLEMYREKIVDXXXXXVAEIYSNRPYELVGGDIFNPGSPPRCILLSNPCVCLF------GLLSLPAYI-ISRCGLF--------CYRCCKQSRQHGP--RADLLVNNHHVLGDTISMTFRMGKEQSYWP 412
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98693.23978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWJ9_9PHAE6.420e-2841.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQN2_ECTSI1.420e-1230.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98693contigP-canaliculata_contig98693:358..1044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size621
Cds size621
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.3317387-CDS-P-canaliculata_contig98693:357..6111622817348.3317387-CDS-P-canaliculata_contig98693:357..611Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98693 358..611 -
1693495238.7856011-CDS-P-canaliculata_contig98693:357..6111693495238.7856011-CDS-P-canaliculata_contig98693:357..611Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98693 358..611 -
1622817348.3456311-CDS-P-canaliculata_contig98693:677..10441622817348.3456311-CDS-P-canaliculata_contig98693:677..1044Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98693 678..1044 -
1693495238.7991397-CDS-P-canaliculata_contig98693:677..10441693495238.7991397-CDS-P-canaliculata_contig98693:677..1044Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98693 678..1044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98693.23978.1prot_P-canaliculata_contig98693.23978.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98693 358..1044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98693.23978.1

>prot_P-canaliculata_contig98693.23978.1 ID=prot_P-canaliculata_contig98693.23978.1|Name=mRNA_P-canaliculata_contig98693.23978.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=207bp
MLFLNDKGGLRFWVAGHSLGGAVAISVILFLHDIPFTAKYIEDYENKFDL
QPNHSTTFNRKVADPWSAASKKGSGRPYELSGGHVFNPGASLDVNDNLIT
SFLGVGGGGLFGAQTFGGMAMAGIFGVILVFVGLIEAFEEHTYGGTDSRP
DKGVTTHHILGDLLSCSYRIGKEKSYMPKSKIAFLVYWWLPKNFKSWGPH
SMENFV*
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mRNA from alignment at P-canaliculata_contig98693:358..1044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98693.23978.1 ID=mRNA_P-canaliculata_contig98693.23978.1|Name=mRNA_P-canaliculata_contig98693.23978.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at P-canaliculata_contig98693:358..1044- (Pelvetia canaliculata dioecious)
ATGCTTTTCTTGAACGACAAAGGGGGTCTCAGGTTCTGGGTTGCTGGACA
CTCACTGGGCGGCGCTGTGGCAATATCTGTAATCCTCTTTCTCCATGATA
TCCCCTTCACCGCAAAGTACATCGAAGACTACGAGAACAAGTTTGATTTA
CAACCTAACCACTCCACCACCTTCAACCGGAAGGTCGCGGACCCTTGGAG
CGCGGCCTCCAAGAAAGGGAGCGGTCGACCGTATGAGCTCAGCGGCGGAC
ACGTCTTCAACCCCGGCGCCTCTCTTGACGTCAACGACAACTTGATAACT
TCGTTTCTCGGAGTTGGCGGTGGTGGCCTTTTTGGCGCCCAGACTTTTGG
CGGCATGGCGATGGCTGGTTAATTCACTGGGGGCACAGCATGGATTGCGA
TGGCTCTGGCCGTTGTGGCGAGTTTCTTTGTAGGTATTTTCGGCGTTATC
CTCGTTTTTGTCGGCCTAATCGAAGCTTTCGAAGAACACACATATGGAGG
TACCGACAGTCGCCCGGACAAGGGGGTGACGACTCATCACATACTCGGAG
ACCTCCTCTCCTGCTCCTACCGCATTGGAAAAGAGAAGAGCTACATGCCC
AAGAGCAAAATAGCGTTCCTAGTGTACTGGTGGCTCCCTAAGAACTTCAA
AAGTTGGGGGCCGCACAGCATGGAAAATTTCGTCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98693:358..1044-

>mRNA_P-canaliculata_contig98693.23978.1 ID=mRNA_P-canaliculata_contig98693.23978.1|Name=mRNA_P-canaliculata_contig98693.23978.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at P-canaliculata_contig98693:358..1044- (Pelvetia canaliculata dioecious)
ATGCTTTTCTTGAACGACAAAGGGGGTCTCAGGTTCTGGGTTGCTGGACA
CTCACTGGGCGGCGCTGTGGCAATATCTGTAATCCTCTTTCTCCATGATA
TCCCCTTCACCGCAAAGTACATCGAAGACTACGAGAACAAGTTTGATTTA
CAACCTAACCACTCCACCACCTTCAACCGGAAGGTCGCGGACCCTTGGAG
CGCGGCCTCCAAGAAAGGGAGCGGTCGACCGTATGAGCTCAGCGGCGGAC
ACGTCTTCAACCCCGGCGCCTCTCTTGACGTCAACGACAACTTGATAACT
TCGTTTCTCGGAGTTGGCGGTGGTGGCCTTTTTGGCGCCCAGACTTTTGG
CGGCATGGCGATGGCTGATGCTTTTCTTGAACGACAAAGGGGGTCTCAGG
TTCTGGGTTGCTGGACACTCACTGGGCGGCGCTGTGGCAATATCTGTAAT
CCTCTTTCTCCATGATATCCCCTTCACCGCAAAGTACATCGAAGACTACG
AGAACAAGTTTGATTTACAACCTAACCACTCCACCACCTTCAACCGGAAG
GTCGCGGACCCTTGGAGCGCGGCCTCCAAGAAAGGGAGCGGTCGACCGTA
TGAGCTCAGCGGCGGACACGTCTTCAACCCCGGCGCCTCTCTTGACGTCA
ACGACAACTTGATAACTTCGTTTCTCGGAGTTGGCGGTGGTGGCCTTTTT
GGCGCCCAGACTTTTGGCGGCATGGCGATGGCTGGTATTTTCGGCGTTAT
CCTCGTTTTTGTCGGCCTAATCGAAGCTTTCGAAGAACACACATATGGAG
GTACCGACAGTCGCCCGGACAAGGGGGTGACGACTCATCACATACTCGGA
GACCTCCTCTCCTGCTCCTACCGCATTGGAAAAGAGAAGAGCTACATGCC
CAAGAGCAAAATAGCGTTCCTAGTGTACTGGTGGCTCCCTAAGAACTTCA
AAAGTTGGGGGCCGCACAGCATGGAAAATTTCGTCTGAGTATTTTCGGCG
TTATCCTCGTTTTTGTCGGCCTAATCGAAGCTTTCGAAGAACACACATAT
GGAGGTACCGACAGTCGCCCGGACAAGGGGGTGACGACTCATCACATACT
CGGAGACCTCCTCTCCTGCTCCTACCGCATTGGAAAAGAGAAGAGCTACA
TGCCCAAGAGCAAAATAGCGTTCCTAGTGTACTGGTGGCTCCCTAAGAAC
TTCAAAAGTTGGGGGCCGCACAGCATGGAAAATTTCGTCTGA
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