mRNA_P-canaliculata_contig9867.23976.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9867.23976.1
Unique NamemRNA_P-canaliculata_contig9867.23976.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: D7FP06_ECTSI (Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP06_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 1.660e-99
Identity = 164/218 (75.23%), Postives = 184/218 (84.40%), Query Frame = 1 
Query:   70 GAHCLLGVTPT---ARADVAERATKISFKDKVSLPGGGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLLVR 714
            GA  LL   P    ARADV ERATKISF++KVSLPGG  SSLMGTGVR KK GP  V VYAVGLYVDEK AA EL  HKGED + LGKN+GFF+RVAKS F+KT+VLKMAREVGTEKMVSALAESVKPR+SGSK+ +D+FQDIL +A+ KEGAAKKGM+FGFVCKP ALCVSVNGK+AGTI SGPLSSAMV+VYL + AVSP A+K FA+GVA+LL R
Sbjct:   15 GALLLLLAAPQNLCARADVTERATKISFREKVSLPGGSGSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGESLGKNDGFFTRVAKSNFEKTMVLKMAREVGTEKMVSALAESVKPRISGSKKPLDSFQDILLKAVGKEGAAKKGMQFGFVCKPGALCVSVNGKDAGTIKSGPLSSAMVDVYLGKKAVSPGAKKAFATGVAALLER 232
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A835Z9G1_9STRA (Chalcone isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G1_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.870e-65
Identity = 116/202 (57.43%), Postives = 149/202 (73.76%), Query Frame = 1 
Query:  109 ADVAERATKISFKDKVSLPGGGQS-SLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMS-GSKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            ADV E AT ISFKD + LPG   + SL GTGVR KK GP A  VYAVG+YVD  +A SEL+ H   ++  L K++ FF     + F+KTLVLKMAR+VG EKMV+ALAESVKPR++ G    ++ FQ +L +A++KEGAA KGM+FGFVCKP +LCVS++GK AGTINS  L SAM++VYL ++AVSP A+  FA G++S+ 
Sbjct:   17 ADVKEHATGISFKDTLKLPGASTAGSLAGTGVRVKKIGPAAFKVYAVGMYVDSAKARSELSKHSSTESRALSKSDAFFKDARSASFEKTLVLKMARKVGAEKMVNALAESVKPRLAPGGDAALEEFQTVLLDAVTKEGAANKGMQFGFVCKPGSLCVSIDGKTAGTINSEQLRSAMLDVYLGKDAVSPGAKTSFAEGMSSMF 218
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A7S1XYD8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYD8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.430e-40
Identity = 87/200 (43.50%), Postives = 122/200 (61.00%), Query Frame = 1 
Query:  121 ERATKISFKDKVS---LPG-GGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            E AT + FK  +S    PG GG + L G G R K+ GP+ V VYAVGLYVD++   S L + +    + L  ++ FF  + K+ F+K  +LKMAR VG++KMV+ALA+S+KPRM    E +  FQ +LS  + K G+  K   FGF      L VS+NGKE GT+NS  L  A  + Y+  NAVSP A+ +FA G+ +++
Sbjct:   24 EAATGLDFKPTMSDSDFPGVGGDAKLAGMGCRIKQIGPVKVKVYAVGLYVDQRAVQSSLNSFEAFPEETLLGSKAFFKAIRKAPFEKCFMLKMARTVGSDKMVNALADSIKPRMKNEMEALTEFQGLLSAGL-KGGSCTKNTAFGFAASKGKLVVSINGKEEGTVNSRELCDAFTDTYIGDNAVSPDAKSNFAKGLCAMI 222
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A6S9FSE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FSE1_HETAK)

HSP 1 Score: 155 bits (393), Expect = 3.580e-40
Identity = 90/210 (42.86%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:   82 LLGVTPTARADVAERATKISFKDKVSLPGGGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKG-EDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            L+ +   A ADV E  T I F D+      G   L G GVR K+ GP++V VY VG+Y+DE  A  E++ + G + AD      GFFSR+ K    K +VLKMAR VG+E M  ALAES+KPRMSG    + +FQ +L + +S++G+AKKG E  F      L V +NGK AG + S  L  A V+ Y+D   VSP  R   A  + + L
Sbjct:   11 LVIIVALALADVTEPKTGIKFADRF-----GGLGLAGVGVRVKQIGPLSVKVYGVGMYMDESSALEEISEYAGGKKAD-----SGFFSRLRKPSIDKKIVLKMARSVGSETMSEALAESIKPRMSGDLPALSSFQTVLLKGLSEDGSAKKGTELAFDASGGKLNVKINGKSAGDVESSSLCDAFVDTYMDDKGVSPTLRDSIAETLCAKL 210
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A7R9YAW0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.780e-40
Identity = 86/197 (43.65%), Postives = 117/197 (59.39%), Query Frame = 1 
Query:  127 ATKISFKDKVS---LPGGGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            AT I F ++++    PG G  +L GTGVR KK GP+AV VYAVGLYVD++   S L + +    + L  ++ FF  + K+ F K   LKMAR VG EKMV+AL+ESV+PRM    E +  FQ +L   + K G+  K   FGF      L VS+NGK+ G + S  L  A+ + YL   AVSP A+  FA G+ ++L
Sbjct:   25 ATGIEFPNRITDKDFPGVGDGTLAGTGVRVKKIGPVAVKVYAVGLYVDQRAVQSSLNSFEAFPEETLLGSKAFFKAIRKAPFDKCFQLKMARTVGGEKMVNALSESVRPRMKSELEALSEFQSVLQSGL-KGGSCVKNTSFGFAANKGKLIVSINGKQEGVVASRELCDALTDTYLGEGAVSPDAKASFAKGLCNML 220
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A7S4J4F7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J4F7_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 8.470e-29
Identity = 84/199 (42.21%), Postives = 114/199 (57.29%), Query Frame = 1 
Query:  121 ERATKISFKDKVSLPGGGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDIL---SEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            E +TKISF +K     GGQS L+G GVR K  GP  + VY VG+YVD   +   L+  K   A+ +  +  F+    +  F KTLVLKM   V  EKM  A+A+SVKPR+SG K  V   ++ L    +  +K+G A  G EF F  +  ++ VSVNGK   TI+S PL  A++N YLD ++VSP  +   A G+  LL
Sbjct:   27 EPSTKISFPEKR----GGQS-LVGVGVRKK--GP--IKVYGVGMYVDGFASKMSLSKFKSTAAEKV--DSSFYKACVEGGFGKTLVLKMKFGVSKEKMAGAIADSVKPRISGDKSAVAKLEESLLVGCDKYAKDGRAGPGTEFCFAIRGASMGVSVNGKSVATISSKPLCKALLNCYLDGSSVSPGLKSTCAEGLIGLL 214
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A7S0Q024_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q024_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 1.850e-28
Identity = 89/217 (41.01%), Postives = 118/217 (54.38%), Query Frame = 1 
Query:   67 IGAHCLLGVTPTARADVAERATKISFKDKVSLPGGGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILS---EAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            +GA  LL     AR    E ATK+ FKD ++    GQ  L+G GVR K  GP  + VY +G+YVD   +   L+ +K  ++  L     FF  +    F KTLVLKM   V  EKM  ALAES+KPRM+G    V  F+ +L    E  +K+G A  G EF F  +  +L V VNGK+ GTINS PL  A++  Y D  +V+PA +   A G+   L
Sbjct:    5 VGALLLLCAGTHARV---EPATKVGFKDSLN----GQP-LVGVGVRKK--GP--IKVYGIGMYVDAMGSKMSLSKYKQHESA-LKLPASFFEDILGG-FGKTLVLKMVYGVSKEKMAGALAESIKPRMTGGLAAVSEFEQMLMDGCETHAKDGRACAGTEFQFGVRGSSLGVHVNGKKVGTINSKPLCRALLKCYFDSKSVAPALKSTSAEGLLERL 207
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A7S0IHP3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IHP3_9EUKA)

HSP 1 Score: 120 bits (301), Expect = 2.160e-27
Identity = 89/212 (41.98%), Postives = 117/212 (55.19%), Query Frame = 1 
Query:   82 LLGVTPTARADVAERATKISFKDKVSLPGGGQSSLMGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILS---EAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASLL 708
            LL V   AR    E ATK++FKD +S    GQ  L+G GVR K  GP  + VY +G+YVD   +   L+ +K + A      + FF  V    F KTL+LKM   V  EKM  ALAES+KPRMSGS   V  F+ +L    EA +  G A  G EF F  +  +L V VNGK+ GTI+S PL  A++  Y D  +V+P+ +   A G+   L
Sbjct:   20 LLAVDVHARV---EPATKVAFKDSLS----GQP-LVGVGVRKK--GP--IKVYGIGMYVDSLGSKMALSKYK-KHASAAELPKQFFEDVLGG-FGKTLLLKMVYGVSKEKMAGALAESIKPRMSGSLSAVAEFEQMLMAGCEAHAMGGRAAGGTEFQFAVRGSSLGVQVNGKKVGTISSKPLCQALLKCYFDGKSVAPSLKSTCAEGLLERL 217
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE)

HSP 1 Score: 112 bits (281), Expect = 1.400e-24
Identity = 74/201 (36.82%), Postives = 108/201 (53.73%), Query Frame = 1 
Query:  109 ADVAERATKISFKDKVSLPGGGQSSLMGTGVRAKKF-GPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSG-SKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASL 705
            A + + AT + F+  VS P   + +L+G GVRAK   GP+AVNVY+VGLYV+  +A   L+  K  +   L K E F+  + K    K + LK AR VG  K+V AL       ++G  +E++  F  +L +++      K+ +      KPD L V V GK AG++    L  A  ++YL +N VS  A+K FAS V  L
Sbjct:   34 AILTDAATGLDFETDVSFPSSPKMTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKEDLPKAMHLKFARSVGASKIVEALTS-----LNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSS-SKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFASRVKDL 228
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BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Match: A0A7S0WAP9_9CRYP (Hypothetical protein n=2 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WAP9_9CRYP)

HSP 1 Score: 88.6 bits (218), Expect = 2.050e-16
Identity = 70/199 (35.18%), Postives = 95/199 (47.74%), Query Frame = 1 
Query:  115 VAERATKISFKDKVSLPGGGQS-SLMGTGVRAKKF-GPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGFFSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQDILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVNVYLDRNAVSPAARKDFASGVASL 705
            V E  T I+F    S+  GG+S  LMG G R KK  GP+AVNVYA+G+YVD+  A++       E A     ++G F+        K+L L MAR V  EK+  ALAE ++PR+ G+   V+ F+         E          F      L VS  G      NS PL  A+ ++YL    VS  A++  A G   L
Sbjct:   15 VKEPITGITFPG--SMQAGGKSLELMGCGERKKKIVGPVAVNVYAIGMYVDQGAASAAGKGTSSEAAAAKVLSDGSFT--------KSLRLVMARTVNAEKIGDALAEQIEPRVRGTGAPVEEFKGFFKGLDKLENQ----QVVTFTQSGTTLAVSAPGNRTSQFNSAPLCKALFDIYLGDKPVSDNAKRAMAQGFLKL 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9867.23976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP06_ECTSI1.660e-9975.23Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z9G1_9STRA3.870e-6557.43Chalcone isomerase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1XYD8_9STRA1.430e-4043.50Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6S9FSE1_HETAK3.580e-4042.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9YAW0_9STRA4.780e-4043.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4J4F7_9EUKA8.470e-2942.21Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0Q024_9EUKA1.850e-2841.01Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0IHP3_9EUKA2.160e-2741.98Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0G4GWT2_9ALVE1.400e-2436.82Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A7S0WAP9_9CRYP2.050e-1635.18Hypothetical protein n=2 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9867contigP-canaliculata_contig9867:643..5525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue1e-82
Seed eggNOG ortholog2880.D7FP06
EggNOG free text desc.Chalcone isomerase-like
EggNOG OGs2E0MF@1,2S81H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-05_001880.1
Exons6
Model size1921
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9867.23976.1prot_P-canaliculata_contig9867.23976.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9867 679..4321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.0829437-UTR-P-canaliculata_contig9867:642..6781622817348.0829437-UTR-P-canaliculata_contig9867:642..678Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9867 643..678 +
1693495238.5865633-UTR-P-canaliculata_contig9867:642..6781693495238.5865633-UTR-P-canaliculata_contig9867:642..678Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9867 643..678 +
1622817348.1684813-UTR-P-canaliculata_contig9867:4321..55251622817348.1684813-UTR-P-canaliculata_contig9867:4321..5525Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9867 4322..5525 +
1693495238.6585429-UTR-P-canaliculata_contig9867:4321..55251693495238.6585429-UTR-P-canaliculata_contig9867:4321..5525Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9867 4322..5525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.0940893-CDS-P-canaliculata_contig9867:678..8241622817348.0940893-CDS-P-canaliculata_contig9867:678..824Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 679..824 +
1693495238.5997958-CDS-P-canaliculata_contig9867:678..8241693495238.5997958-CDS-P-canaliculata_contig9867:678..824Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 679..824 +
1622817348.1055746-CDS-P-canaliculata_contig9867:1689..18031622817348.1055746-CDS-P-canaliculata_contig9867:1689..1803Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 1690..1803 +
1693495238.6085737-CDS-P-canaliculata_contig9867:1689..18031693495238.6085737-CDS-P-canaliculata_contig9867:1689..1803Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 1690..1803 +
1622817348.1163275-CDS-P-canaliculata_contig9867:2475..25541622817348.1163275-CDS-P-canaliculata_contig9867:2475..2554Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 2476..2554 +
1693495238.617837-CDS-P-canaliculata_contig9867:2475..25541693495238.617837-CDS-P-canaliculata_contig9867:2475..2554Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 2476..2554 +
1622817348.1268709-CDS-P-canaliculata_contig9867:3176..32841622817348.1268709-CDS-P-canaliculata_contig9867:3176..3284Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 3177..3284 +
1693495238.6271636-CDS-P-canaliculata_contig9867:3176..32841693495238.6271636-CDS-P-canaliculata_contig9867:3176..3284Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 3177..3284 +
1622817348.1406913-CDS-P-canaliculata_contig9867:3636..37611622817348.1406913-CDS-P-canaliculata_contig9867:3636..3761Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 3637..3761 +
1693495238.6358364-CDS-P-canaliculata_contig9867:3636..37611693495238.6358364-CDS-P-canaliculata_contig9867:3636..3761Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 3637..3761 +
1622817348.1562612-CDS-P-canaliculata_contig9867:4212..43211622817348.1562612-CDS-P-canaliculata_contig9867:4212..4321Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 4213..4321 +
1693495238.646903-CDS-P-canaliculata_contig9867:4212..43211693495238.646903-CDS-P-canaliculata_contig9867:4212..4321Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9867 4213..4321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9867.23976.1

>prot_P-canaliculata_contig9867.23976.1 ID=prot_P-canaliculata_contig9867.23976.1|Name=mRNA_P-canaliculata_contig9867.23976.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=227bp
MRLVVLFTGVIGAHCLLGVTPTARADVAERATKISFKDKVSLPGGGQSSL
MGTGVRAKKFGPMAVNVYAVGLYVDEKEAASELATHKGEDADFLGKNEGF
FSRVAKSKFQKTLVLKMAREVGTEKMVSALAESVKPRMSGSKETVDTFQD
ILSEAMSKEGAAKKGMEFGFVCKPDALCVSVNGKEAGTINSGPLSSAMVN
VYLDRNAVSPAARKDFASGVASLLVR*
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mRNA from alignment at P-canaliculata_contig9867:643..5525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9867.23976.1 ID=mRNA_P-canaliculata_contig9867.23976.1|Name=mRNA_P-canaliculata_contig9867.23976.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4883bp|location=Sequence derived from alignment at P-canaliculata_contig9867:643..5525+ (Pelvetia canaliculata dioecious)
ATAAAGGTGTCCCCCAGCTGAAAGTTTCGTAAGGGGATGAGGCTTGTCGT
GCTCTTCACGGGTGTCATTGGCGCTCATTGTCTGCTCGGAGTGACTCCCA
CTGCCCGGGCGGACGTGGCGGAGAGGGCAACCAAGATATCTTTCAAGGAT
AAAGTCAGTCTTCCCGGTGGAGGCCAGAGCAGGTCAGACGAGGGGAAGAA
GGAACAATTTTGCGGGAGGGCGGGAATGGTGTTGCTGATAGGGTGTTGTA
TCGGGATTGGGGTCTTGGCAGCCGATCGAGGCAAACGAGGCCACCCCATG
TATGTCCTCCGAGGTTTGGGACGTTTTTTCTTGGGAAATGGTGGAAAGTG
ATACACAGCAGGAGTCGAACTCGTCGCTCATCTCTGTTGATGTACGAAAC
CGTCATGGGAGACACACGCCACGTTGCGGCATCTCGTTTTTAAAGTAAAA
TGATCGAGCTGTTCATGTGGTAACCGTCTCGCATGTTGCGGCCTTTTTTC
AGCTTCTTGTATGAAGCGTGGGCGCGGGCATAGACAAGCTTTGTGCTTGT
TAGTGCGTTAGAAACACAGCGTTTTTATCAACCCTCGATGGGTCTCTCGG
GAATATATAACGGCATTTCACTCCCGAGATTGGACGTAAGAGTCGATTTG
GACAGTTTGGAGTGTTATCTGAACTCTTCAGACGGCATTACCCAAGAAAC
AATATCGCTCAGAGGAAAAAACAAGAATATTCTGTGAGAGTACGAGCATT
ACTCGTCTGGTTATATATTCATGTTTCTCTCTTCCCGGAGAGATTTGCCT
GCATGCCAATCGACAGATGGAGAAGAAACGCGTTACCTCGACCTACCGAC
AGCCTTGAGGTCGTCGACCTACCTACAGCCTCGAGGCCTGTCTTCTTGCT
TGTGCCTCCCCGCAGCAGCCACAATACCACTGTGTGTGGCCCTCTACTAT
ATCGTTTTTAATCGGACCCCCAGATCCATATTTTTTCCCATTCAAGTTGT
CTCTCCTTTTTCGTCTTTTTTTCGACTTGCATCGCATGAATCTATAGTCT
CATGGGGACGGGGGTGCGCGCGAAGAAATTCGGGCCGATGGCGGTGAACG
TCTACGCGGTCGGACTGTACGTGGACGAGAAAGAAGCGGCAAGCGAGCTC
GCTACGCACAAGTGAGCGCTGCTTGAAGAGAGAAATATCCAATCATTGCT
AGCTGAACAGGGGGAGGAATGCGCCCAGCTAGCTCTCAGATGACGATAAC
TATGATTGTTTTGCGTTTGAGCCGTTTGGGTTCCGCTGCTGCTTTTCGGT
AGACTGATGTGCGCATGCCTCAAGCGTACCGCTCACCATGATTGGACTTG
TTGGGACAGGGCGGAACGGGACAGGGAAGGGCGAGAGACGAATCGTAACT
TTGTTTTGTCCGGGAGGAAATGAATTGATCGGATACAGTATTCAACCCTG
AGGGGCCGGCGTGCCCTGAATCACGTGGCATCATGATTTGGTGTCGCGGT
TGACCACTGTGAGGGCCGAACCCTTTTTAAGCTCGCTCTCGTTTCCGACC
GCCGGGCACCATGGAAATGCAGCAGCGCCGAGTGGATGAAGCACCTTATC
TATATTAGACGTTGTCTCTGAACTCTAATGAGTTTCAAATCCTCCTTGCG
ACCTGATTGAATGCCTCATATTTTTTTCTGTCTTGCCTACTTTTTACTAC
CGTGATTGGGAATCTACATAGATTTCTTGTTGGCAGATGTGTAACCCCCC
GAAGTCTCTTATCCGCCATGTTACGCTCCTTTTTGGACTCCGGACAACGC
TCGCCCAAAATATGGCCTGCATTCTGGGAGCAGGGGCGAGGACGCGGATT
TCCTGGGAAAAAACGAAGGCTTCTTCTCGCGAGTGGCGAAATCAAAGTTC
CAGAAAACGTTGGTAAGCCCGCAGCTTGAAAATAGTGTTGCAATTCGCGC
TACACCTGCGTTCCATTAAAACACAATACACATTTTAACCACGTGGTAGT
AGCATCTTCTTCCTGGTGTAAAATATTGCCATGTGTTTCCGTGGGGTTTA
TGTGTTTCCGTGGGGTTTGGGTTTTACCAGCTCAGCGCTGTGGTTTGGTC
TTGGTCTACGCCAACCATGGTACCAACGATGGTATCTCGTATATATCGAA
CCCTAGGAGACGCATCCTTGCACGAAGTGGTACAGTTGAAGCAACCTCGG
AGGAGACGTTACTCGGGTGTTGGGAGGGGCGAGGAAAGACAGCGAGGATA
TGAAAGGCGCAGGGGCGACGAAAGGGAGCGATGACACGAAAGGCGCAGGG
GCGAGCACCGCAACAGACCGTTTCTGAAGCGTCGTTGCTGTCGGCTCAAA
GAGTCCAACCACACTCAGATATGCTGATCGGGCTCCCTCCTGTCCACCGT
CGGCGATCTGGGTGACACGTTGACATCTGAAACGAAATGATGTACTAGTA
CAGTACAGTACGTACAGTACAGTAGAGCTAGAGGTGGTTTTGATTTTTGC
AGTCGTGTTTTCACCCCCGAAAAAAACATGCCAGGTGTTGAAGATGGCGC
GAGAAGTTGGAACGGAGAAGATGGTGAGCGCTCTGGCGGAAAGCGTGAAG
CCTCGCATGTCGGGCTCGAAAGAGACGGTCGACACCTTCCAGGTGCCAAA
ACTGGCGGCGGCAGCGGACGTGGAGAGAGAGAGAGAGAGAGATATGCTGT
GGATTCGTGAGAGGACTATGCTTTAGCGTAGGTACCCCGGTACAAATTTT
CGATGTTCATTTTCTCTGCGTGAATGATAAGCTCTATGCAAGCGTGTGTA
AGGTTTAGTTCGATCACCGCTACTGTACAGCGCCGTCGCTTAATTGTCTC
CATGACGACGTCACCCCCCCCCCCCTTGAATTTTCCTCAAAACAGTTTTG
GCGCTACAGATATTTCTGTAGCGAAGTGACCCCCCCCCCCCCATCGCATC
GCCCGCGTCCCCGCACAACGCCTCTTCTCTTCTCTTCCCTCCAGGACATT
CTTTCGGAGGCCATGAGTAAAGAAGGGGCAGCGAAGAAGGGCATGGAATT
CGGGTTCGTCTGCAAGCCAGACGCGTTGTGCGTTAGCGTCAACGGAAAGG
AGGCAGGAACCATCAACAGGTGGCGTGATATGAGAGCGCCCGGTGCTGCA
AAGAGCAGGCCTCGGGCGTATTCCTACTTGACACGGGGGCGAGCGGCATA
AAACAATTTTCTGCAGGACCACAGGCCACAGGATTTTGCCTTTTGTTTGG
ATGTTTGGTGCAATGTTGACGAAAATATGCTGTTTCATGAAACACAACTC
CTGCATTGCAACGTGCTGCACGTATTTCAGTTTTTGCAGGGGTTAGTCAA
AGTTTCGAGCTTTTCGCCTTACACTTGTACTGTTTATTCGGCTTTTCCAG
GGTGTATGTGTGTATGGTCACACGTATAGCAAGAGTATGGATCAACCGGG
TAAGATTGTCAATCCTGCACGTGATCAGCTGAACAGGGAAAATTAATGAT
GTGTCATTGAATCCATCCCCCCCTACCCCCTTCCCTGCGGCCTCGTCCTT
GATCCCCACACGTTCCTCAGCGGACCCCTTTCTAGCGCCATGGTGAACGT
ATACCTCGATAGGAATGCAGTATCCCCAGCCGCCCGGAAAGATTTTGCAT
CTGGCGTTGCTTCTCTTTTGGTGCGTTAGCAGCTCATACACAGCCCCAAG
TGTCGGGAGGGTTCCGGGATACAGTACTGGAATTTTAGATGGATAGGACG
CTTCTCGAGTAAAGGGGGTGGACTTGAACGTTTAGTGAGTTACACCTGAC
CAGCTGTCTTATTACAAGAGTCGAAAAGCCTGTTTTCTTTTCAATTTGTC
GCGTCGAAATGACTTGTACGACGGTAGACGGTTGGCGTCGTAGACGTAGA
ATGCAGAAGAAGTCATTTTTTCTGCTCTGTCTAAGCTGTGCGGGGGGGGA
CATAATTAGTTGTCATCCTGAATAAAAGTAGAGAACGCAATGTGTTGGGC
GCGTAAAGATTGAGATAGCTCTGAATCTATCAATCCTGAGAGTGCGTTCG
AGGCAAAGCTTTTCCTTCAGTGGGCTTTTTTGGGTGTGTGCTAGAGAGAT
GCGCGTACACAAAACTAAAAAGGGGCAGTGGTACCGATAGCTTAGTGACA
TTTAGTAACCCGATACATATACACGAGGTTGCATCAATCGCTTAGCCAGC
CTAAAATAAAAAAAGCAAATGGTCCGTTCTCGCCGAAGTTATCCTGAGTG
GATTGGCGGGGTGTCTGCAGCAGAGAGTTTTCTGAAAATTCATGTTGAGC
ATCCAAACTTGAACTGGTCTACAGCAGATTGCTACTTTTAGATAAGTTTC
CAACTCGGTACCATGAACATGCTACTAAAGCGGTTGCTAGGTCTATTTGT
GGTTTGATGCGTACAAACGCTACATTAAGAGCCCCTTATCGATGGCTGGA
GCCGTATGGGTATACCTGAAAAGTCTCGCCCAATGATGCAGTCTGAATTC
TGTTTGACCAATTTGTTCTGGACTGAGTATTCCGATTCAATAATGGTTTT
AATAGTTCAGGCCAGCCTCCTGGATGCTCCATATCCAAGCCATAATCCCC
AAACACTACACGACGGAGATCAGGAAGGTACAGCCGATCATGCCAATTGG
GGATCGATCATTTTATAGAGAATGAGTGAGGTCCGCAGTGGCGAGCAGAA
AGGGCATACATATTTATATTCTGAAATATTTTATGGCGGTCAGAAACTGC
ATAAATATTTATGTTCTTTACGGGTTAGAGGTACGTCTCTGTTGACCTGT
TCGTATATCGGCGAACTACGCAACGGCCGGAAATTTGAAGGCGGGAATGA
ACCCTCCATCGCATATAGATTAATTCTTAGAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9867:643..5525+

>mRNA_P-canaliculata_contig9867.23976.1 ID=mRNA_P-canaliculata_contig9867.23976.1|Name=mRNA_P-canaliculata_contig9867.23976.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at P-canaliculata_contig9867:643..5525+ (Pelvetia canaliculata dioecious)
ATGAGGCTTGTCGTGCTCTTCACGGGTGTCATTGGCGCTCATTGTCTGCT
CGGAGTGACTCCCACTGCCCGGGCGGACGTGGCGGAGAGGGCAACCAAGA
TATCTTTCAAGGATAAAGTCAGTCTTCCCGGTGGAGGCCAGAGCAGATGA
GGCTTGTCGTGCTCTTCACGGGTGTCATTGGCGCTCATTGTCTGCTCGGA
GTGACTCCCACTGCCCGGGCGGACGTGGCGGAGAGGGCAACCAAGATATC
TTTCAAGGATAAAGTCAGTCTTCCCGGTGGAGGCCAGAGCAGTCTCATGG
GGACGGGGGTGCGCGCGAAGAAATTCGGGCCGATGGCGGTGAACGTCTAC
GCGGTCGGACTGTACGTGGACGAGAAAGAAGCGGCAAGCGAGCTCGCTAC
GCACAATCTCATGGGGACGGGGGTGCGCGCGAAGAAATTCGGGCCGATGG
CGGTGAACGTCTACGCGGTCGGACTGTACGTGGACGAGAAAGAAGCGGCA
AGCGAGCTCGCTACGCACAAGGGCGAGGACGCGGATTTCCTGGGAAAAAA
CGAAGGCTTCTTCTCGCGAGTGGCGAAATCAAAGTTCCAGAAAACGTTGG
GGCGAGGACGCGGATTTCCTGGGAAAAAACGAAGGCTTCTTCTCGCGAGT
GGCGAAATCAAAGTTCCAGAAAACGTTGGTGTTGAAGATGGCGCGAGAAG
TTGGAACGGAGAAGATGGTGAGCGCTCTGGCGGAAAGCGTGAAGCCTCGC
ATGTCGGGCTCGAAAGAGACGGTCGACACCTTCCAGGTGTTGAAGATGGC
GCGAGAAGTTGGAACGGAGAAGATGGTGAGCGCTCTGGCGGAAAGCGTGA
AGCCTCGCATGTCGGGCTCGAAAGAGACGGTCGACACCTTCCAGGACATT
CTTTCGGAGGCCATGAGTAAAGAAGGGGCAGCGAAGAAGGGCATGGAATT
CGGGTTCGTCTGCAAGCCAGACGCGTTGTGCGTTAGCGTCAACGGAAAGG
AGGCAGGAACCATCAACAGGACATTCTTTCGGAGGCCATGAGTAAAGAAG
GGGCAGCGAAGAAGGGCATGGAATTCGGGTTCGTCTGCAAGCCAGACGCG
TTGTGCGTTAGCGTCAACGGAAAGGAGGCAGGAACCATCAACAGCGGACC
CCTTTCTAGCGCCATGGTGAACGTATACCTCGATAGGAATGCAGTATCCC
CAGCCGCCCGGAAAGATTTTGCATCTGGCGTTGCTTCTCTTTTGGTGCGT
TAGCGGACCCCTTTCTAGCGCCATGGTGAACGTATACCTCGATAGGAATG
CAGTATCCCCAGCCGCCCGGAAAGATTTTGCATCTGGCGTTGCTTCTCTT
TTGGTGCGTTAG
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