mRNA_P-canaliculata_contig9827.23925.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9827.23925.1
Unique NamemRNA_P-canaliculata_contig9827.23925.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A6H5JJZ4_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ4_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 3.090e-149
Identity = 204/252 (80.95%), Postives = 218/252 (86.51%), Query Frame = 3
Query:    3 APDVVFCGDKSRGRKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETTYINAAQDLNPQPIFLDIWV 758
            APD+V CGDKSRGRKLR+VC+SDTHGKHHA+RH IP           GDIL+HCGDFSTKL QRDFEA VEDFDRFLGSLGH HKLVI GNHEIAFN+YTREQIQRR+SNATYLEDS   VEGLKFYGTPWTNSSHMGFSCRG  LEGVWSAIPE VDILLTHMPP+N LDLAFD G+ ++ DPC VCGE HRS+AHWGSWSLTDRVA LKPKVHVFGHVHNSHGI+R+DET YINAAQD N QPIF DIWV
Sbjct:   76 APDIVCCGDKSRGRKLRVVCLSDTHGKHHAMRHTIPD----------GDILIHCGDFSTKLQQRDFEAAVEDFDRFLGSLGHPHKLVIAGNHEIAFNNYTREQIQRRISNATYLEDSETTVEGLKFYGTPWTNSSHMGFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSNAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDETVYINAAQDENQQPIFFDIWV 317          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: D7FHZ7_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ7_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 2.060e-127
Identity = 175/207 (84.54%), Postives = 185/207 (89.37%), Query Frame = 3
Query:  138 QYGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETTYINAAQDLNPQPIFLDIWV 758
            Q GDIL+HCGDFSTKL QRDFEA VEDFDRFLGSLGHRHKLVI GNHEIAFN YTREQIQRR+SNATYLEDS   VEGLKFYGTPWTNSSHMGFSCRG  LEGVWSAIPE VDILLTHMPP+N LDLAFD G+ ++ DPC VCGE HRS+AHWGSWSLTDRVA LKPKVHVFGHVHNSHGI+R+D+T YINAAQD N QPIF DIWV
Sbjct:   15 QDGDILIHCGDFSTKLQQRDFEAAVEDFDRFLGSLGHRHKLVIAGNHEIAFNHYTREQIQRRISNATYLEDSETTVEGLKFYGTPWTNSSHMGFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSHAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDDTVYINAAQDENQQPIFFDIWV 221          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A7S4MMV8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMV8_9EUKA)

HSP 1 Score: 244 bits (624), Expect = 2.760e-74
Identity = 112/227 (49.34%), Postives = 151/227 (66.52%), Query Frame = 3
Query:   45 KLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETTYINAAQDL 725
            ++R+V ISDTH  H+     IP           GDIL+H GDF+ ++    FE  +EDF+ FLG+L H+HK+ + GNHEIA N+YT+++IQ+ L N  YL+DSS ++ G+KFYG+PWT SS MGFSC   +++  W  IP   DIL+THMPP+N+LDLAF       N  CS CG+ H  Y HWGS SL +RV  +KPK H+FGHVH+  G  R  +TT++N+A DL
Sbjct:   19 RVRIVHISDTHKSHNRYLSSIPD----------GDILIHSGDFAQRMKTEGFEEKMEDFNNFLGALPHKHKIFVAGNHEIALNNYTKKEIQKMLPNCVYLQDSSVKLMGIKFYGSPWTTSSRMGFSCPRAEIKKKWKKIPRSTDILITHMPPFNILDLAFSSKALD-NSTCSTCGKSHERYRHWGSNSLLERVETVKPKFHLFGHVHDDPGFKRVGDTTFVNSAVDL 234          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A814A372_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814A372_9BILA)

HSP 1 Score: 185 bits (470), Expect = 2.410e-51
Identity = 104/252 (41.27%), Postives = 143/252 (56.75%), Query Frame = 3
Query:   36 RGRKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTK-----LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRL-SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETTYINAAQDLNPQPIFLDIWV 758
            R + + +V +SDTH  H  I   IP           GDI +HCGDF+ +     L        V DF+++LG L H+HK+VI GNHEI F  ++ E+IQ +L SN+ YL+D   +VEG+  YG+ W    H    CR       WS+IP D+DIL+THMPP  +LDLAF     +  +PCS+C    H SY HWGS SL   +  R+KP++H FGHVH+ +G       + T +INAA DL  Q   L+ ++
Sbjct:   21 RYKTISVVIVSDTHKNHEKI--NIPD----------GDIFLHCGDFTNRGDWLNLTNDQIPQSVIDFNQWLGRLTHKHKIVICGNHEIGFEKFSTEEIQSKLLSNSIYLKDDLIQVEGITIYGSSW----HFNERCRAK-----WSSIPSDIDILMTHMPPKFILDLAFQPRKVASTEPCSICNNTVHGSYGHWGSKSLIKEIRQRIKPRIHCFGHVHDDNGYKYDQHENGTLFINAAADLTRQCFKLNFYL 251          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A817R4F3_9BILA (Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817R4F3_9BILA)

HSP 1 Score: 183 bits (465), Expect = 1.300e-50
Identity = 100/252 (39.68%), Postives = 142/252 (56.35%), Query Frame = 3
Query:   36 RGRKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTK-----LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRL-SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETTYINAAQDLNPQPIFLDIWV 758
            R + + +V +SDTH  H  I   IP           GDI +HCGDF+ K     L        + DF+++LG L H+HK+VI GNHEI F  Y++E+IQ  L +N  YL+D   +VEG+  YG+PW+   H             W +IP ++DIL+TH+PP  +LDLAF     +  +PCS+C +  H SY HWGS SL   +  R++P++H FGHVH+ +G        ET +INAA DL  Q   L+ ++
Sbjct:   21 RYKSISVVIVSDTHKNHEVI--NIPD----------GDIFLHCGDFTNKGDWRSLTNDQIPQSIIDFNQWLGRLKHKHKIVICGNHEIGFQKYSKEEIQSNLLTNCIYLKDELIQVEGITIYGSPWSFKEHYRTK---------WLSIPSNIDILMTHIPPKFILDLAFQPKKVASTEPCSMCNDTVHGSYGHWGSKSLIKEIRERIQPRIHCFGHVHDDNGYKYDQHESETLFINAATDLTGQVFKLNFYL 251          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A1S3JYP0_LINUN (UPF0046 protein C25E10.12-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JYP0_LINUN)

HSP 1 Score: 181 bits (459), Expect = 1.730e-49
Identity = 99/265 (37.36%), Postives = 147/265 (55.47%), Query Frame = 3
Query:   27 DKSRGRKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTKLYQR------DFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTD----LEGVWSAIPEDVDILLTHMPPYNVLDLAFDLG---TTSRNDPCSVCGERHR--SYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVR----RDETTYI---NAAQDLNPQPIFLDIW 755
            ++S  R LR+V ISDTH KH      IPG          GD+LVH GDFS   + R      D+   ++  D+F GSL H+HK+ + GNH++    +T ++I+  + N TYL+D    +EGLKFYG+PWT S     +   T+    L+  WS +P+D+D+L+THMPP  + D  +       T   DPC  C  R    S  ++GS  L D + R++PK+HVFGHVH ++G+ R    +D T      NA+ + +P P+  D++
Sbjct:   25 ERSDARVLRIVHISDTHNKHREYAPHIPG----------GDVLVHSGDFSNFNFFRKWFKEIDYRYELKALDKFFGSLPHKHKIFVAGNHDLNLEKHTSQEIRNNVKNFTYLQDDWIEIEGLKFYGSPWTASRSSSRADAFTEPIEELDSKWSKLPDDIDVLVTHMPPLGIRDKEYIYRGRFKTMSFDPCKFCESRAHPLSVHYFGSKGLLDALKRIRPKIHVFGHVHGTNGVTRLKHNQDGTANTFCSNASMEGHPTPVVYDLF 279          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A816D1C4_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816D1C4_ADIRI)

HSP 1 Score: 180 bits (457), Expect = 1.950e-49
Identity = 98/251 (39.04%), Postives = 142/251 (56.57%), Query Frame = 3
Query:   33 SRGRKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTK------LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRL-SNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIVRRDETTYINAAQDLNPQPIFLDIWV 758
            +R +K+ +V +SDTH  H  +   IP           GDIL+HCGDFS +        +      + DF+++LG+L H+HK VIGGNHEI F   + E IQ +L +N  YL+D    VEG+  YG+PW  +               WS+IP+ +D+L+TH+PP  +LDLA+        +PC++C ++ H SY HWGS SL   V  R++P+VH FGHVH+  G    + T +INAA +L  Q   L+ +V
Sbjct:   23 ARYKKVSVVIVSDTHKNHRRL--AIPN----------GDILLHCGDFSNRHDWYNLSDENPIPKSIVDFNQWLGTLPHQHKFVIGGNHEIGFAQLSLEDIQSKLLTNCKYLQDELVEVEGITIYGSPWPFTQSY---------RSKWSSIPDHIDVLMTHVPPQYILDLAYQPKKAPITEPCAMCDDKVHGSYGHWGSRSLKRAVLERIQPRVHCFGHVHDDPGYKYENNTLFINAAANLTHQSFKLNFYV 252          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: UPI001E1D9459 (UPF0046 protein C25E10.12-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9459)

HSP 1 Score: 177 bits (450), Expect = 1.980e-48
Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 3
Query:   27 DKSRGRKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTKLY-------QRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTN----SSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDL-----GTTSRNDPCSVCGERHRSYAHWGSWSLTDRV-ARLKPKVHVFGHVHNSHGIVRRDETTYINAAQDLNPQPIFLDIWV 758
            +K   + +R+V ISDTH +H   +  IP           GDIL+H GDFS           +RD E+V+ + + F   L  +HK+++ GNHE++F+   ++ ++ +L+  TYL+D S  +EGL  YGTPW+     S   GF+     L   W  IP   DIL+THMPP  +LDL            S NDPC++CG+ H    HWG   L   +  RL+P +H+FGHVH  +G+   D  T+ NAA  L  +    D ++
Sbjct:   10 EKGEAKVVRIVHISDTHMRHDQYQESIPD----------GDILIHSGDFSAFSVGRYFGNKERDRESVIREINSFFQKLQFKHKVLVAGNHELSFSDKNKDFVEEQLTEVTYLQDKSITLEGLNIYGTPWSAKRAVSYARGFAKPRQHLHRYWDKIPSQTDILVTHMPPEGILDLGTKTCAGIRNLFSSNDPCNICGDMHEMNEHWGCKELKKTIFKRLRPTLHLFGHVHEGNGVTVADGITFSNAAMKLEEKINVFDYYL 260          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A7S3XQM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQM8_HETAK)

HSP 1 Score: 171 bits (434), Expect = 2.220e-47
Identity = 83/153 (54.25%), Postives = 101/153 (66.01%), Query Frame = 3
Query:   60 CISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDL 518
            CISDTHG+H  +   IP           GDIL+H GDF+ KL +RD    +E+F+ FL  L H+HK+VI GNHEIA N   RE+IQ+ LSN  YL+DSS  V+GLK YG+PWTNS  MGFSC G  L   W  IP D D+L+TH+PP  VLDL
Sbjct:    1 CISDTHGQHSKLLPCIPD----------GDILIHAGDFTNKLRKRDMVKSLEEFNDFLQKLPHKHKIVIAGNHEIALNGIPREEIQKHLSNCHYLQDSSVMVDGLKIYGSPWTNSVEMGFSCSGKYLHKYWDRIPLDTDVLVTHLPPEGVLDL 143          
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Match: A0A814F8R4_9BILA (Hypothetical protein n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A814F8R4_9BILA)

HSP 1 Score: 172 bits (435), Expect = 2.660e-46
Identity = 96/250 (38.40%), Postives = 136/250 (54.40%), Query Frame = 3
Query:   42 RKLRMVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTK-----LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRR-LSNATYLEDSSARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIVRRDETT---YINAAQDLNPQPIFLDIWV 758
            +K+ +V +SDTH  H  +   IP           GDI +HCGDF+ +     L        V DF+++LG L H HKLVI GNHE+ F   + E+IQ + L+N  YL+D   ++E +  YG PWT + H             W +IP  +DIL+TH+PP  +LDLA+     S  +PCS+C    H  Y HWGS SL   +  R++P+VH FGHVH+  G     + T   +INAA DL+ +P   + +V
Sbjct:   23 KKVSIVVVSDTHKNHEKL--SIPD----------GDIFLHCGDFTNRHDWLNLSPDQIPQSVIDFNQWLGKLSHPHKLVICGNHELGFGKLSHEEIQSKYLTNCKYLKDELIQIEDISIYGCPWTFTEHYRTK---------WPSIPSHIDILMTHVPPQFILDLAYQPKALSSTEPCSMCNNTVHGCYGHWGSASLIKEIRQRIQPRVHCFGHVHDDPGHKYDQDDTGTLFINAATDLSNRPFKFNFYV 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9827.23925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ4_9PHAE3.090e-14980.95Metallophos domain-containing protein n=1 Tax=Ecto... [more]
D7FHZ7_ECTSI2.060e-12784.54Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4MMV8_9EUKA2.760e-7449.34Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A814A372_9BILA2.410e-5141.27Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A817R4F3_9BILA1.300e-5039.68Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 ... [more]
A0A1S3JYP0_LINUN1.730e-4937.36UPF0046 protein C25E10.12-like isoform X1 n=1 Tax=... [more]
A0A816D1C4_ADIRI1.950e-4939.04Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
UPI001E1D94591.980e-4836.02UPF0046 protein C25E10.12-like n=1 Tax=Mercenaria ... [more]
A0A7S3XQM8_HETAK2.220e-4754.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A814F8R4_9BILA2.660e-4638.40Hypothetical protein n=7 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9827contigP-canaliculata_contig9827:1362..5485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.5
Seed ortholog evalue1.4e-103
Seed eggNOG ortholog2880.D7FHZ7
EggNOG free text desc.Calcineurin-like phosphoesterase
EggNOG OGsKOG3947@1,KOG3947@2759
Ec32 ortholog descriptionCalcineurin-like phosphoesterase domain, lpxH type
Ec32 orthologEc-12_006490.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1598
Cds size708
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.1355014-UTR-P-canaliculata_contig9827:1361..14141622817344.1355014-UTR-P-canaliculata_contig9827:1361..1414Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9827 1362..1414 +
1693495236.1578689-UTR-P-canaliculata_contig9827:1361..14141693495236.1578689-UTR-P-canaliculata_contig9827:1361..1414Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9827 1362..1414 +
1622817344.231648-UTR-P-canaliculata_contig9827:4648..54851622817344.231648-UTR-P-canaliculata_contig9827:4648..5485Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9827 4649..5485 +
1693495236.2528677-UTR-P-canaliculata_contig9827:4648..54851693495236.2528677-UTR-P-canaliculata_contig9827:4648..5485Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9827 4649..5485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.1476169-CDS-P-canaliculata_contig9827:1414..15021622817344.1476169-CDS-P-canaliculata_contig9827:1414..1502Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 1415..1502 +
1693495236.1719685-CDS-P-canaliculata_contig9827:1414..15021693495236.1719685-CDS-P-canaliculata_contig9827:1414..1502Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 1415..1502 +
1622817344.1607406-CDS-P-canaliculata_contig9827:1930..20461622817344.1607406-CDS-P-canaliculata_contig9827:1930..2046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 1931..2046 +
1693495236.1841633-CDS-P-canaliculata_contig9827:1930..20461693495236.1841633-CDS-P-canaliculata_contig9827:1930..2046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 1931..2046 +
1622817344.1742506-CDS-P-canaliculata_contig9827:2322..23931622817344.1742506-CDS-P-canaliculata_contig9827:2322..2393Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 2323..2393 +
1693495236.1932511-CDS-P-canaliculata_contig9827:2322..23931693495236.1932511-CDS-P-canaliculata_contig9827:2322..2393Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 2323..2393 +
1622817344.185955-CDS-P-canaliculata_contig9827:3148..32331622817344.185955-CDS-P-canaliculata_contig9827:3148..3233Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 3149..3233 +
1693495236.2030287-CDS-P-canaliculata_contig9827:3148..32331693495236.2030287-CDS-P-canaliculata_contig9827:3148..3233Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 3149..3233 +
1622817344.1975753-CDS-P-canaliculata_contig9827:3574..37441622817344.1975753-CDS-P-canaliculata_contig9827:3574..3744Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 3575..3744 +
1693495236.2199864-CDS-P-canaliculata_contig9827:3574..37441693495236.2199864-CDS-P-canaliculata_contig9827:3574..3744Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 3575..3744 +
1622817344.2090936-CDS-P-canaliculata_contig9827:4131..41891622817344.2090936-CDS-P-canaliculata_contig9827:4131..4189Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 4132..4189 +
1693495236.231733-CDS-P-canaliculata_contig9827:4131..41891693495236.231733-CDS-P-canaliculata_contig9827:4131..4189Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 4132..4189 +
1622817344.2203298-CDS-P-canaliculata_contig9827:4528..46481622817344.2203298-CDS-P-canaliculata_contig9827:4528..4648Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 4529..4648 +
1693495236.2418802-CDS-P-canaliculata_contig9827:4528..46481693495236.2418802-CDS-P-canaliculata_contig9827:4528..4648Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9827 4529..4648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9827.23925.1prot_P-canaliculata_contig9827.23925.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9827 1415..4648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9827.23925.1

>prot_P-canaliculata_contig9827.23925.1 ID=prot_P-canaliculata_contig9827.23925.1|Name=mRNA_P-canaliculata_contig9827.23925.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=236bp
MVCISDTHGKHHAIRHKIPGEFGHSRRDQYGDILVHCGDFSTKLYQRDFE
AVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDS
SARVEGLKFYGTPWTNSSHMGFSCRGTDLEGVWSAIPEDVDILLTHMPPY
NVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVF
GHVHNSHGIVRRDETTYINAAQDLNPQPIFLDIWV*
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mRNA from alignment at P-canaliculata_contig9827:1362..5485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9827.23925.1 ID=mRNA_P-canaliculata_contig9827.23925.1|Name=mRNA_P-canaliculata_contig9827.23925.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4124bp|location=Sequence derived from alignment at P-canaliculata_contig9827:1362..5485+ (Pelvetia canaliculata dioecious)
GGGCGCCCGACGTGGTGTTCTGCGGCGATAAGTCTCGCGGGCGTAAGCTG AGGATGGTATGCATATCTGACACCCATGGGAAGCACCACGCGATTCGGCA CAAGATCCCAGGTGAATTCGGGCACAGCCGACGCGATCAGTGTGAGTCGC GTTGCAGTCTGTCAAATAAGTGTCAAGATGTCAAGTGCAATTCATCTTCA AACGCGCACGCGCGGATTCGAGCGAATGAGACAGAGTGTCGTACTGCATC TCAGCTCACCAGAGCAGAGAAAAGCAGGAGCGGAGTCACGCTGTTGTTGT AAATCTATGACTCCCTCTCTCTCGTAGCAACCTTTTTTTGACTCCAATCG TACAAAAAATTGAAACAGTAGGTTATACAGGCGCCATCTTCACCGTCCGA ACCTTTATTCGGTATTGCAGGGACGAAATCCCGAGCGCGCCCAACCTGCA CGCTGCGACCTGGCGCTCGATATAATAGCTTGGAGAATGTTATTTCGAAA TGAAGGGTAGTTTCCTCGAACACTCTTCTTCGTCTAACTCACGTTGCACC GCTCGCGCGGAACGTGCAGACGGAGATATTCTCGTCCACTGCGGAGACTT TTCCACGAAGCTCTACCAGCGCGACTTCGAGGCCGTCGTGGAGGACTTCG ACCGATTCCTCGGGTCCTTGGGGCACAGACACAAGGTAAATGGCGGAGAG GTCCCCGAGGCGTCTAGACGCTGCCGTGTTTGTGCCCCACCGAACGGGAA CTATCTTCCTAGACCTGCGGACGTAATACTGAGAACGGGTTACAGCGAGT TTTCCCCCTAAGCGTCCCATGAGATGACGTTTCTTTGCGTCCTCGCTCCC CCCCCCCGTTCTGGTTGGGCTGGCGTTTCTTTGCTCTATGCGATATTCGT ACGTACGTCTCTTGCTGTTCGTCCTCCACATACGATGCCCTTCTCGCGCG TGGCGCCTCAGCTCGTCATCGGCGGCAACCACGAGATCGCGTTTAACTCC TACACAAGAGAGCAGATACAGCGCCGTTTAAGGTGATAGACCCGTGGCCC CGACCGCCTCCACGCTAAGGTTACGGCCGCGAACAAGCGCGCGTCCCCCC ATTTGGACGAATCTAACTTTCGACAGGTCTCCCTCACACTTGAGCTATAC CTGGTATGTATTTTATACATCTTGACCACCTCCTGATTATGGGAGTGGCT TAGTCCTGCTGAAGTCTCTCCCTTGCTGAGGACGGTGAACGAGAATGACA ATCGAGAGGTGCATAGTACCCGTATGACATTATTTTTTTCCAATCATGCG CGTCAGTGGTCTCGTCTGGGACGATTCGAGCACTCTAATACGGGTACGAC TCGCAAAACTCTTGAAACCACAGAGATTGCATACCACCTCCGACTGTACC TCGACCGATTCAAATATTTCGAACATTTATTTTTATCAACAAAGACGTCC TGGGGAAGCCAGCCAGCCAGCCAGCCAGCCAAAGATTTGTACGTGACAGT ATTGGCGTCTACCTACCCCGCTGCCGCTGGCATTGCGGCGACCGGCGCAT CGGCGTCGTCGTCGAGCACATCACCGCTCGCGCTGAGTGGAATGCAAACA GTCGAAAACCCCGACAGCAGCGCTCCCTTCACCAGTGCACCAGGGTTTCA AGAGTACCCATCGCAATCTTCCGCAGGAGCACGCGAAGGAACGGGATGTG GGGGTGAAATAATTTTGCCGCCCTGTTTTGCCCGCCCTCACACTCCGCAT TGCTTCCATTTTCTTTTTCGCCTCTTTCTACGTGCAGCAACGCCACCTAC CTTGAAGATTCGAGCGCCAGGGTCGAGGGGCTCAAGTTTTACGGGACTCC TTGGACGAATTCCTCCCACATGGCGAGTTTCGAGGGGAGGGGACAGAGGT TGACCGCCAAATTATCGTGTTTTCTCGCTCGAACAAACGCGTCAATAAAT TGTCCGTGTTACGTGGGTGAAATAACCAAACAACTTATGTAAGGTGAAGG AATCACGCGTGCCGGCCTACAGCCGCCGTGATCTTGCCCACACCTTTGAT GTTGGTGTTTCGTGTGGTCGTCTGTGTGAACCGCTGACCGATGCAGCGCC GCGCGCAGCCAGATCTCGCGTCAACCAACCTCACAATTTGATCGCCCGAA GCATAATGGGCACATTCGCCGTCTCTCGCTCCCGCCCACTTCTCCACGCC TTTCCCTCGGCAGGGTTTCAGCTGCAGAGGAACAGATCTGGAAGGCGTGT GGTCCGCGATTCCAGAAGACGTTGATATTCTGTTGACTCACATGCCGCCG TACAACGTGCTCGACCTCGCCTTCGACCTTGGCACCACGTCAAGGAACGA CCCCTGCTCAGTCTGCGGGGAGAGACACCGGAGGTCATCCCCCGCGCTTC AAGAAGCGAAAATTTTGTTAATCTTGTTAGTTGGGCGGCTCGTGAAAACC TCCGACTTTACCCGGTGACGTTCGCGGTGTCAGAGAAGAGCGAAGAACCC CACCGTGAAGATAGATTCTTCGGTCGACGCAGTATTTTGGCCACCTACGG TAATTAGCTGTGGAGCTCGTCATCGTAACCGTCACGATGGCTTCACACGC TGCGCTGACAGCGCACAGCAAACACTTTGATGTACGGGACCATCACGGCA AAAAAATATCAGCCTAAAAAAACCACACGCCCCCCCCCGCCTGTCTCTGT ACCGCACATTTTCATACTTGCCAAACAAAACTCGGTCGGGGCATGATCGG CTCGCCGTGACATTGTGCAGCTACGCTCACTGGGGAAGCTGGAGCTTGAC GGACCGTGTCGCGAGGTTGAAACCAAAGGTGCGTCTTTCCGAACTGTAAA GGCAGATATCTGATCGTGACCGCGGATCCATCCAGTCTTGGTCTTTCAAC AGACACGAACAACACTTGTCGTTTCTTGCTACAAAAGAAATTGGTGAAAT CAGCTACAGACAGTTCCTGCCTGCGGGCTGCACGCGTAACGCCCGTTGCA GATTGAAAGTTTCGTTTTGCCTGAGAGCGGCCCGTGGTTGCGGGTTCTTT GCCCTCGTCCAGACCGTCCAGATGGTGTGTACTCTACCGCTTATTACTTT CGGCACATGCGTTTTCTGAAGGGGATGTTCCTATGCCGCACCCACCCCCG CACCCCGCACCCCGTAGGTTCACGTGTTTGGTCACGTGCACAATTCCCAC GGAATCGTCAGGAGGGACGAAACCACATACATAAACGCCGCGCAAGACTT GAACCCCCAACCCATTTTTTTGGATATTTGGGTCTGAGCGCGTGCGATAG TGAGCGGTGGATATACTGTTGAAAGGATGACATTAATAATATTAGTGTCC TGCCGGAATTTTTTTATCTTTTTGTTGGAGCCTTAGAATCCGTGCTCTTT AATAACAGCGCTTCGAAAGCGGCTTGAAAGCAGCCAGATTATTTTGCTCG TAGATATATAACTGGTTCGAGCTTAACGTCTTTGCAATAAGCGGAACGTG GATGGGTTCCAAGATTTGTAAACACCCCCTCAATTTTTGTTCAGACGAGT TGAATAAAAGTTGTTTTGGTACGCGTGGTGTTTTAAGGTCCAGGATGGGC GGCTGATCCCTCGTCCTTCTATTAATAGGGAGAAATACGACGGATAAAGA GCACCAGCTGTCTTTGAACGGGGCATTTATTTGCGTTTTTCGAGTTGTTG TTCCTGGTACCTTGCCATGCACATGTCCTAATTTTCGAGTGGTTTTCATC GAGGGCCGGGGTTGACGAGCGTAAACGTCGGGTAGCCTTGGGGACAGCAG TGCACGCCTAGCAAAAAAAGGGGTCGCTAGTTAGGAGTTTTTTTATCTGT CTAAAGCAAGAAGTCGGAAAACATTTTTAAGAAGAATGATAAATCACTGA TTGAAAGGTCTTCGTCTCATCATCGCCCGAGGTGAAAAAAACATGAGTTT TCTTTAAACACGAACGATCATCGTGTTTCCCGAAAAAATGATAGACCAGT AGTTCTAGACCAGCCAGAACGGACTTCTCTTGAATTACACTACAATTCCG GGCTATCAAGAAAGTTGGGTCGGCAGTTGTTTGAGAATCTGGTGGACGAG AAGCGAACGTGTCTTCGCTGGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9827:1362..5485+

>mRNA_P-canaliculata_contig9827.23925.1 ID=mRNA_P-canaliculata_contig9827.23925.1|Name=mRNA_P-canaliculata_contig9827.23925.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at P-canaliculata_contig9827:1362..5485+ (Pelvetia canaliculata dioecious)
ATGGTATGCATATCTGACACCCATGGGAAGCACCACGCGATTCGGCACAA
GATCCCAGGTGAATTCGGGCACAGCCGACGCGATCAGTATGGTATGCATA
TCTGACACCCATGGGAAGCACCACGCGATTCGGCACAAGATCCCAGGTGA
ATTCGGGCACAGCCGACGCGATCAGTACGGAGATATTCTCGTCCACTGCG
GAGACTTTTCCACGAAGCTCTACCAGCGCGACTTCGAGGCCGTCGTGGAG
GACTTCGACCGATTCCTCGGGTCCTTGGGGCACAGACACAAGACGGAGAT
ATTCTCGTCCACTGCGGAGACTTTTCCACGAAGCTCTACCAGCGCGACTT
CGAGGCCGTCGTGGAGGACTTCGACCGATTCCTCGGGTCCTTGGGGCACA
GACACAAGCTCGTCATCGGCGGCAACCACGAGATCGCGTTTAACTCCTAC
ACAAGAGAGCAGATACAGCGCCGTTTAAGCTCGTCATCGGCGGCAACCAC
GAGATCGCGTTTAACTCCTACACAAGAGAGCAGATACAGCGCCGTTTAAG
CAACGCCACCTACCTTGAAGATTCGAGCGCCAGGGTCGAGGGGCTCAAGT
TTTACGGGACTCCTTGGACGAATTCCTCCCACATGCAACGCCACCTACCT
TGAAGATTCGAGCGCCAGGGTCGAGGGGCTCAAGTTTTACGGGACTCCTT
GGACGAATTCCTCCCACATGGGTTTCAGCTGCAGAGGAACAGATCTGGAA
GGCGTGTGGTCCGCGATTCCAGAAGACGTTGATATTCTGTTGACTCACAT
GCCGCCGTACAACGTGCTCGACCTCGCCTTCGACCTTGGCACCACGTCAA
GGAACGACCCCTGCTCAGTCTGCGGGGAGAGACACCGGAGGGTTTCAGCT
GCAGAGGAACAGATCTGGAAGGCGTGTGGTCCGCGATTCCAGAAGACGTT
GATATTCTGTTGACTCACATGCCGCCGTACAACGTGCTCGACCTCGCCTT
CGACCTTGGCACCACGTCAAGGAACGACCCCTGCTCAGTCTGCGGGGAGA
GACACCGGAGCTACGCTCACTGGGGAAGCTGGAGCTTGACGGACCGTGTC
GCGAGGTTGAAACCAAAGCTACGCTCACTGGGGAAGCTGGAGCTTGACGG
ACCGTGTCGCGAGGTTGAAACCAAAGGTTCACGTGTTTGGTCACGTGCAC
AATTCCCACGGAATCGTCAGGAGGGACGAAACCACATACATAAACGCCGC
GCAAGACTTGAACCCCCAACCCATTTTTTTGGATATTTGGGTCTGAGTTC
ACGTGTTTGGTCACGTGCACAATTCCCACGGAATCGTCAGGAGGGACGAA
ACCACATACATAAACGCCGCGCAAGACTTGAACCCCCAACCCATTTTTTT
GGATATTTGGGTCTGA
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