mRNA_P-canaliculata_contig98240.23923.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98240.23923.1
Unique NamemRNA_P-canaliculata_contig98240.23923.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98240.23923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98240contigP-canaliculata_contig98240:341..992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98240.23923.1prot_P-canaliculata_contig98240.23923.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98240 367..992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.0030825-UTR-P-canaliculata_contig98240:340..3661622817344.0030825-UTR-P-canaliculata_contig98240:340..366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98240 341..366 -
1693495236.0785248-UTR-P-canaliculata_contig98240:340..3661693495236.0785248-UTR-P-canaliculata_contig98240:340..366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98240 341..366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.0150774-CDS-P-canaliculata_contig98240:366..4271622817344.0150774-CDS-P-canaliculata_contig98240:366..427Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98240 367..427 -
1693495236.087788-CDS-P-canaliculata_contig98240:366..4271693495236.087788-CDS-P-canaliculata_contig98240:366..427Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98240 367..427 -
1622817344.0292723-CDS-P-canaliculata_contig98240:906..9921622817344.0292723-CDS-P-canaliculata_contig98240:906..992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98240 907..992 -
1693495236.098439-CDS-P-canaliculata_contig98240:906..9921693495236.098439-CDS-P-canaliculata_contig98240:906..992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98240 907..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98240.23923.1

>prot_P-canaliculata_contig98240.23923.1 ID=prot_P-canaliculata_contig98240.23923.1|Name=mRNA_P-canaliculata_contig98240.23923.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=49bp
FDQICCFCVRPGTTGGITPGASLCVTSRGLVANEGIALIKFVTSTSGP*
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mRNA from alignment at P-canaliculata_contig98240:341..992-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98240.23923.1 ID=mRNA_P-canaliculata_contig98240.23923.1|Name=mRNA_P-canaliculata_contig98240.23923.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=652bp|location=Sequence derived from alignment at P-canaliculata_contig98240:341..992- (Pelvetia canaliculata dioecious)
TTTGATCAAATTTGTTGCTTCTGCGTCCGGCCCGGAACTACGGGTGGTAT
AACCCCTGGAGCTTCTCTCTGTGTTACTTCGCGGGGGTAAGTGTAAATCC
TGCCGCTCTGGATGTGTGAATGCTCCTCTGGTGTGTGCCCGTAAGTTTGG
GTTGTACGCTTGAAGATATAGATTTGATCAAATTCGTTGCTTTTTCGTCT
GGTACTAGTAGCGATTTTGTACTAAAATTAGTGCCAAGTACTTTAAATCC
AATACAATAAATGTATACCCCGATGTGTGTTCTTCAGTTTGCTTGTACGC
TTGAAGGAACAGATTTGATCAAATTCGTTGCTTTTCCGTCCCGGCACGTA
ACTACGGGCGGCATTAACCCCGGAGCTTCTCTCTTTGTTACTTCGCGGGA
GTAAGTGTAAATCCTGCCTCTCTGGATGTTTGAATGCTCCTCTGGTGTGT
GCCCGTAAGTTTGGGTTGTACGCTTGAAGGGATAGATTTGACCAAATTCG
TTGCTTTTTCGTCTCGTACTTTACATTCAATATAATAAATATAAACCCCG
ATGTCTGTGCGCTAGTTTGGTTGCGAATGAAGGAATAGCTTTGATCAAGT
TTGTCACTTCTACGTCCGGCCCGTAACTACGGGTGGCGTACCCCGGAGCT
TC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98240:341..992-

>mRNA_P-canaliculata_contig98240.23923.1 ID=mRNA_P-canaliculata_contig98240.23923.1|Name=mRNA_P-canaliculata_contig98240.23923.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at P-canaliculata_contig98240:341..992- (Pelvetia canaliculata dioecious)
TTTGATCAAATTTGTTGCTTCTGCGTCCGGCCCGGAACTACGGGTGGTAT
AACCCCTGGAGCTTCTCTCTGTGTTACTTCGCGGGGTTTGATCAAATTTG
TTGCTTCTGCGTCCGGCCCGGAACTACGGGTGGTATAACCCCTGGAGCTT
CTCTCTGTGTTACTTCGCGGGGTTTGGTTGCGAATGAAGGAATAGCTTTG
ATCAAGTTTGTCACTTCTACGTCCGGCCCGTAATTTGGTTGCGAATGAAG
GAATAGCTTTGATCAAGTTTGTCACTTCTACGTCCGGCCCGTAA
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