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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 60.5 |
| Seed ortholog evalue | 5.6e-07 |
| Seed eggNOG ortholog | 1122612.AUBA01000003_gene1465 |
| Preferred name | vioA |
| KEGG rclass | RC00006,RC00011,RC00013,RC00781,RC02518,RC02873 |
| KEGG ko | ko:K00384,ko:K03388,ko:K13308,ko:K20429 |
| KEGG Reaction | R02016,R02773,R03596,R04540,R09372,R11928,R11931,R11943,R11944 |
| KEGG Pathway | ko00450,ko00523,ko00680,ko01100,ko01120,ko01130,ko01200,map00450,map00523,map00680,map01100,map01120,map01130,map01200 |
| KEGG Module | M00356,M00357,M00563,M00567,M00797 |
| GOs | GO:0005575,GO:0005576,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010106,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043207,GO:0044403,GO:0044419,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0075136,GO:0098771 |
| EggNOG free text desc. | DegT/DnrJ/EryC1/StrS aminotransferase family |
| EggNOG OGs | 1MUPN@1224,2JZWG@204457,2U51A@28211,COG0399@1,COG0399@2,COG2072@1,COG2072@2 |
| EC | 1.8.1.9,1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,2.6.1.33 |
| COG Functional cat. | M |
| Best tax level | Sphingomonadales |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 321 |
| Cds size | 318 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817343.8915157-UTR-P-canaliculata_contig98204:748..751 | 1622817343.8915157-UTR-P-canaliculata_contig98204:748..751 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig98204 749..751 + |
| 1693495236.0339835-UTR-P-canaliculata_contig98204:748..751 | 1693495236.0339835-UTR-P-canaliculata_contig98204:748..751 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig98204 749..751 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817343.9025717-CDS-P-canaliculata_contig98204:751..1069 | 1622817343.9025717-CDS-P-canaliculata_contig98204:751..1069 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig98204 752..1069 + |
| 1693495236.0455937-CDS-P-canaliculata_contig98204:751..1069 | 1693495236.0455937-CDS-P-canaliculata_contig98204:751..1069 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig98204 752..1069 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98204.23920.1 >prot_P-canaliculata_contig98204.23920.1 ID=prot_P-canaliculata_contig98204.23920.1|Name=mRNA_P-canaliculata_contig98204.23920.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=106bp
MFDVLIIGSGPAGTGLLSCLLNRAKNDDTKALKICLIDRLPADQTGLIRD
YTIASDTRAEKFLTCLEDLPQTIKENAELCQLTEALRSYGPIAAPLCLVG
DFYRVM back to topmRNA from alignment at P-canaliculata_contig98204:749..1069+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig98204.23920.1 ID=mRNA_P-canaliculata_contig98204.23920.1|Name=mRNA_P-canaliculata_contig98204.23920.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at P-canaliculata_contig98204:749..1069+ (Pelvetia canaliculata dioecious)
CGCATGTTCGACGTTTTGATCATTGGGAGTGGCCCCGCCGGAACAGGCCT
TCTTTCTTGCTTGCTCAATCGCGCAAAAAATGACGACACGAAGGCTCTAA
AAATTTGCCTCATTGATCGTCTTCCCGCAGACCAGACGGGCCTAATCCGG
GACTACACCATCGCATCCGACACCCGGGCAGAGAAATTCCTGACCTGCCT
CGAAGACTTGCCCCAAACGATAAAAGAGAACGCGGAGTTATGCCAGTTGA
CGGAGGCGTTACGGAGCTATGGCCCAATAGCTGCGCCGCTTTGCCTTGTC
GGGGATTTTTATCGGGTGATG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig98204:749..1069+ >mRNA_P-canaliculata_contig98204.23920.1 ID=mRNA_P-canaliculata_contig98204.23920.1|Name=mRNA_P-canaliculata_contig98204.23920.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at P-canaliculata_contig98204:749..1069+ (Pelvetia canaliculata dioecious)
ATGTTCGACGTTTTGATCATTGGGAGTGGCCCCGCCGGAACAGGCCTTCT
TTCTTGCTTGCTCAATCGCGCAAAAAATGACGACACGAAGGCTCTAAAAA
TTTGCCTCATTGATCGTCTTCCCGCAGACCAGACGGGCCTAATCCGGGAC
TACACCATCGCATCCGACACCCGGGCAGAGAAATTCCTGACCTGCCTCGA
AGACTTGCCCCAAACGATAAAAGAGAACGCGGAGTTATGCCAGTTGACGG
AGGCGTTACGGAGCTATGGCCCAATAGCTGCGCCGCTTTGCCTTGTCGGG
GATTTTTATCGGGTGATGATGTTCGACGTTTTGATCATTGGGAGTGGCCC
CGCCGGAACAGGCCTTCTTTCTTGCTTGCTCAATCGCGCAAAAAATGACG
ACACGAAGGCTCTAAAAATTTGCCTCATTGATCGTCTTCCCGCAGACCAG
ACGGGCCTAATCCGGGACTACACCATCGCATCCGACACCCGGGCAGAGAA
ATTCCTGACCTGCCTCGAAGACTTGCCCCAAACGATAAAAGAGAACGCGG
AGTTATGCCAGTTGACGGAGGCGTTACGGAGCTATGGCCCAATAGCTGCG
CCGCTTTGCCTTGTCGGGGATTTTTATCGGGTGATG back to top
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