mRNA_P-canaliculata_contig98151.23914.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98151.23914.1
Unique NamemRNA_P-canaliculata_contig98151.23914.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98151.23914.1 vs. uniprot
Match: A0A7W7ISC3_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas bullata TaxID=13160 RepID=A0A7W7ISC3_9CAUL)

HSP 1 Score: 348 bits (893), Expect = 2.300e-120
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 WRDLALHTLPVATVLGFLAVIVFLNSVFGIWGLSVAQLVTPGDTIVPGVILGILLVALFMFAFIPGTLLDPILKKMPMRIRPYALAGVVAASAVFWIPNGVGGFGVKFVATLIALGCAMHPFLNRHDFEKIPHMAKAAIVVVFAPAAVWLTLAFTEAPKLFAASGFMSGASIEKQEGVP 537
            WRDLALHTLPVATVLGFLAVIVFLNSVFGIWGLSVAQLVTPGDTIVPGVILGILLVALFMFAFIPGTLLDPILKKMPMRIRPYALAGVVAASAVFWIPNGVGGFGVKFVATLIALGCAMHPFLNRHDFEKIPHMAKAAIVVVFAPAAVWLTLAFTEAPKLFAASGFMSGASIEKQEGVP
Sbjct:   14 WRDLALHTLPVATVLGFLAVIVFLNSVFGIWGLSVAQLVTPGDTIVPGVILGILLVALFMFAFIPGTLLDPILKKMPMRIRPYALAGVVAASAVFWIPNGVGGFGVKFVATLIALGCAMHPFLNRHDFEKIPHMAKAAIVVVFAPAAVWLTLAFTEAPKLFAASGFMSGASIEKQEGVP 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98151.23914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W7ISC3_9CAUL2.300e-120100.00Uncharacterized protein n=1 Tax=Brevundimonas bull... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98151contigP-canaliculata_contig98151:533..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.3159215-CDS-P-canaliculata_contig98151:532..10691622817343.3159215-CDS-P-canaliculata_contig98151:532..1069Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98151 533..1069 +
1693495235.6164472-CDS-P-canaliculata_contig98151:532..10691693495235.6164472-CDS-P-canaliculata_contig98151:532..1069Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98151 533..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98151.23914.1prot_P-canaliculata_contig98151.23914.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98151 533..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98151.23914.1

>prot_P-canaliculata_contig98151.23914.1 ID=prot_P-canaliculata_contig98151.23914.1|Name=mRNA_P-canaliculata_contig98151.23914.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp
WRDLALHTLPVATVLGFLAVIVFLNSVFGIWGLSVAQLVTPGDTIVPGVI
LGILLVALFMFAFIPGTLLDPILKKMPMRIRPYALAGVVAASAVFWIPNG
VGGFGVKFVATLIALGCAMHPFLNRHDFEKIPHMAKAAIVVVFAPAAVWL
TLAFTEAPKLFAASGFMSGASIEKQEGVP
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mRNA from alignment at P-canaliculata_contig98151:533..1069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98151.23914.1 ID=mRNA_P-canaliculata_contig98151.23914.1|Name=mRNA_P-canaliculata_contig98151.23914.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at P-canaliculata_contig98151:533..1069+ (Pelvetia canaliculata dioecious)
TGGCGCGATCTTGCGCTTCACACCCTCCCGGTCGCGACGGTGCTCGGCTT
TCTTGCCGTCATCGTCTTCCTGAACTCGGTGTTCGGGATATGGGGGCTGT
CGGTGGCTCAATTGGTCACGCCGGGGGACACCATCGTCCCCGGCGTCATC
CTGGGCATTCTGTTGGTCGCCCTGTTCATGTTCGCCTTCATTCCGGGCAC
GCTGCTCGACCCGATCCTGAAAAAGATGCCCATGCGGATACGCCCCTATG
CCCTGGCGGGCGTCGTGGCGGCCAGCGCCGTGTTCTGGATCCCGAACGGC
GTCGGCGGCTTCGGCGTAAAATTCGTCGCCACTCTGATCGCTCTGGGCTG
CGCCATGCACCCCTTTCTCAACCGTCACGATTTCGAGAAGATCCCGCACA
TGGCCAAGGCCGCCATCGTGGTCGTTTTCGCACCGGCAGCCGTATGGCTC
ACACTGGCCTTCACAGAAGCTCCCAAGCTTTTCGCTGCCTCGGGCTTCAT
GAGCGGGGCAAGCATTGAGAAGCAGGAGGGTGTGCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98151:533..1069+

>mRNA_P-canaliculata_contig98151.23914.1 ID=mRNA_P-canaliculata_contig98151.23914.1|Name=mRNA_P-canaliculata_contig98151.23914.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig98151:533..1069+ (Pelvetia canaliculata dioecious)
TGGCGCGATCTTGCGCTTCACACCCTCCCGGTCGCGACGGTGCTCGGCTT
TCTTGCCGTCATCGTCTTCCTGAACTCGGTGTTCGGGATATGGGGGCTGT
CGGTGGCTCAATTGGTCACGCCGGGGGACACCATCGTCCCCGGCGTCATC
CTGGGCATTCTGTTGGTCGCCCTGTTCATGTTCGCCTTCATTCCGGGCAC
GCTGCTCGACCCGATCCTGAAAAAGATGCCCATGCGGATACGCCCCTATG
CCCTGGCGGGCGTCGTGGCGGCCAGCGCCGTGTTCTGGATCCCGAACGGC
GTCGGCGGCTTCGGCGTAAAATTCGTCGCCACTCTGATCGCTCTGGGCTG
CGCCATGCACCCCTTTCTCAACCGTCACGATTTCGAGAAGATCCCGCACA
TGGCCAAGGCCGCCATCGTGGTCGTTTTCGCACCGGCAGCCGTATGGCTC
ACACTGGCCTTCACAGAAGCTCCCAAGCTTTTCGCTGCCTCGGGCTTCAT
GAGCGGGGCAAGCATTGAGAAGCAGGAGGGTGTGCCCTGGCGCGATCTTG
CGCTTCACACCCTCCCGGTCGCGACGGTGCTCGGCTTTCTTGCCGTCATC
GTCTTCCTGAACTCGGTGTTCGGGATATGGGGGCTGTCGGTGGCTCAATT
GGTCACGCCGGGGGACACCATCGTCCCCGGCGTCATCCTGGGCATTCTGT
TGGTCGCCCTGTTCATGTTCGCCTTCATTCCGGGCACGCTGCTCGACCCG
ATCCTGAAAAAGATGCCCATGCGGATACGCCCCTATGCCCTGGCGGGCGT
CGTGGCGGCCAGCGCCGTGTTCTGGATCCCGAACGGCGTCGGCGGCTTCG
GCGTAAAATTCGTCGCCACTCTGATCGCTCTGGGCTGCGCCATGCACCCC
TTTCTCAACCGTCACGATTTCGAGAAGATCCCGCACATGGCCAAGGCCGC
CATCGTGGTCGTTTTCGCACCGGCAGCCGTATGGCTCACACTGGCCTTCA
CAGAAGCTCCCAAGCTTTTCGCTGCCTCGGGCTTCATGAGCGGGGCAAGC
ATTGAGAAGCAGGAGGGTGTGCCC
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