mRNA_P-canaliculata_contig98025.23900.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Match: A0A518EPK8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EPK8_9BACT) HSP 1 Score: 133 bits (334), Expect = 1.990e-33 Identity = 85/223 (38.12%), Postives = 124/223 (55.61%), Query Frame = 1 Query: 1 YGDHHVAVVGDEIITRSDVLIHLS--RSKEPTEGYEGLTQMQILEQRYLEALEELIDAKLKTQGGENLGFDPELIERATDSAFDSQIRRWGGEQRAAEALKSMNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKALYRELSNSRRTEDQEKVGKS-QGKVTIQEFLMAV----RSPDAVEESESFVAALRENVTGGILTFDQAVAQY 648
YG+ HVAVVG+EIITR DV L R ++PT L + + AL +LI+ +LK QGG + G++ ELIE + F +++ GG Q AA + TP+ K + ++ WE ++ G+ PG TGR D YIRPG+ A YRE +R + VGK+ QGKV++Q ++ V R P+AV+ + LRE + GILTFD+A+ +
Sbjct: 50 YGNFHVAVVGEEIITRIDVFSWLGSPRFEDPTVDQPDLDPAKRQALKISAALTQLIEQRLKIQGGRSQGYEEELIEAERERFFRAKLEELGGAQAAAANFERFGITPNDYKNLLGEGLMANLWENSIKGDLPGATGRIFVDSYIRPGQQWARYREYVEARDEKLNAVVGKTRQGKVSVQRIVLMVTPGGRPPEAVKGE---IETLRERIQDGILTFDEAIRTF 269
BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Match: A0A521K9X2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K9X2_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 3.280e-9 Identity = 58/215 (26.98%), Postives = 91/215 (42.33%), Query Frame = 1 Query: 16 VAVVGDEIIT--RSDVLIHLSRSKEPTEGYEGLTQMQILEQRYLEALEELIDAKLKTQGGENLGFDPELIERATDSAFDSQIRRWGGEQRAAEALKSMNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKALYRELSNSRRTEDQEKVGKSQGKVTIQEFLMAVRSPDAVEESESFVAALRENVTGGILTFDQAVAQYAE 654
+ V+ D+ IT R D I L K P E ++ L +R ++D +L+TQ GENLG D + +ER + Q + G AE L+ + RDR SW GE G GR +D Y+RPGEL Y++ D +V +Q ++ ++ + + E+V G +TFD V + ++
Sbjct: 42 IQVINDDAITAARLDREIQLLLRKYPVTTQEDHEKLVALARR------RVVDERLQTQAGENLGLDEKEVERRGKLIREKQKEK--GLDLLAEDLQKQGLDAAGAQRSMRDRTYQASWFYPAIGELQGVRGRFWRDTYVRPGELLHAYQQSKADLAEPD---------RVVLQLLDVSAADNGGMDRARKAIDQACEDVAAGRMTFDDCVDEMSQ 239
BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Match: A0A518BRM6_9BACT (Chaperone SurA n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BRM6_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 2.570e-6 Identity = 44/154 (28.57%), Postives = 72/154 (46.75%), Query Frame = 1 Query: 7 DHHVAVVGDEIITRS--DVLIHLSRSKEPTEGYEGLTQMQILEQRYLEALEELIDAKLKTQGGENLGFDPELIERATD--SAFDSQIRRWGGEQRAAEALKSMNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKALYR 456
D +AV GD +ITR D + +++++ P E +++ E + + A L Q GE L E++E + R G + +AL++ P ++ RD++ WEA V G+ GRP D +IRPGEL+ +YR
Sbjct: 35 DGVLAVAGDRVITRQQWDRSVQMAKAQNPVATLEQEQELRF------EVMRSEVMALLTAQAGEELEVPAEMVEAQVRYRREMEEDARGVVGYR---DALEASGIDPLDMERATRDQLYRGQWEAYVVGDENYAGGRPEVDRFIRPGELRTVYR 179 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98025.23900.1 >prot_P-canaliculata_contig98025.23900.1 ID=prot_P-canaliculata_contig98025.23900.1|Name=mRNA_P-canaliculata_contig98025.23900.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=218bp YGDHHVAVVGDEIITRSDVLIHLSRSKEPTEGYEGLTQMQILEQRYLEALback to top mRNA from alignment at P-canaliculata_contig98025:417..1070+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98025.23900.1 ID=mRNA_P-canaliculata_contig98025.23900.1|Name=mRNA_P-canaliculata_contig98025.23900.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig98025:417..1070+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98025:417..1070+ >mRNA_P-canaliculata_contig98025.23900.1 ID=mRNA_P-canaliculata_contig98025.23900.1|Name=mRNA_P-canaliculata_contig98025.23900.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at P-canaliculata_contig98025:417..1070+ (Pelvetia canaliculata dioecious)back to top |