mRNA_P-canaliculata_contig98019.23899.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 185 bits (469), Expect = 2.580e-52 Identity = 92/117 (78.63%), Postives = 103/117 (88.03%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKHE+D +ISGDGQAAF+EL Y+KVTDEVIRATM+EL+NT MEP QNPDDYFNQK LLR +AEKMGE ISD YF D CVTGFT+ YKDVKM+MYRDP F+VD+MQTTMRHMFLDE
Sbjct: 81 QKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDE 197
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE) HSP 1 Score: 172 bits (437), Expect = 9.090e-52 Identity = 84/117 (71.79%), Postives = 100/117 (85.47%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKHE+D ISGDGQAAF+ELCN YD+VTDEVIRA M+EL N M PG+NPDDYFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK+M++RDP+F+V MQ+TMR++FLDE
Sbjct: 103 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE) HSP 1 Score: 167 bits (422), Expect = 2.740e-50 Identity = 81/115 (70.43%), Postives = 97/115 (84.35%), Query Frame = 1 Query: 7 HENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
HE+D ISGDGQAAF+ELCN YD+VTDEVIRA M+EL N M PG+NPDDYFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK+++ RDP+F+V MQ+TMR++FLDE
Sbjct: 38 HEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDE 152
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE) HSP 1 Score: 171 bits (434), Expect = 4.060e-50 Identity = 83/117 (70.94%), Postives = 100/117 (85.47%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKHE+D ISGDGQAAF+ELCN YD+VTDEVIRA M+EL N M PG+NPD+YFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK+M++RDP+F+V MQ+TMR++FLDE
Sbjct: 103 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE) HSP 1 Score: 166 bits (419), Expect = 4.940e-50 Identity = 79/117 (67.52%), Postives = 99/117 (84.62%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKH++D I GDGQA+F+ELCN YD+VTDEVIRA M+EL N M PG+NPDDYFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK++++RDP+F+V MQ+T+R++FLDE
Sbjct: 60 QKHKDDTVIRGDGQASFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDPTFNVLNMQSTVRNIFLDE 176
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: D7G2T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T3_ECTSI) HSP 1 Score: 165 bits (417), Expect = 8.790e-50 Identity = 84/117 (71.79%), Postives = 98/117 (83.76%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKH++D +ISGDGQAAF+ L Y+KVTDEVIRATM+EL+NT ME GQ PD YFNQK LLR +AE+MG+ I DR F+DICVTGFTD K+VKM+MYRDP F VD+MQTTMR MFLDE
Sbjct: 64 QKHDDDTDISGDGQAAFEALNLNYNKVTDEVIRATMEELINTPMETGQTPDVYFNQKHLLRHKAEEMGKTILDRSFRDICVTGFTDEEKNVKMIMYRDPDFKVDKMQTTMRLMFLDE 180
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.710e-47 Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKHE+D ISGDGQAAF+ELCN YD+VTDEVIRA M+EL N M PG+NPDDYFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK+M++RDP+F+V M +TMR++FLDE
Sbjct: 121 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDE 237
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.360e-46 Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1 Query: 4 KHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
KHE+D +SGDGQAAF EL Y++VTDEVIRA + +L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDE
Sbjct: 102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDE 217
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.590e-45 Identity = 81/117 (69.23%), Postives = 97/117 (82.91%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKH +D ISGDGQAAF+ELCN YD+VTDEVIR M+EL N M G+NPDDYFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK+M++RDP+F+V MQ+TMR++FLDE
Sbjct: 79 QKHVDDTGISGDGQAAFEELCNNYDRVTDEVIRTKMEELENNPMNLGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 195
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.100e-45 Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 1 Query: 1 QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPDDYFNQKRLLRIRAEKMGEHISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDE 351
QKHE+D ISGDGQAAF+ELCN YDKVTDEVIRA M+EL N M PG NPD YFNQK LLR + +KMGE ++DR FK ICV F+D YKDVK+M++RDP+F+V MQ+TMR++FLDE
Sbjct: 83 QKHEDDTGISGDGQAAFEELCNNYDKVTDEVIRAKMEELENNPMNPGANPDGYFNQKHLLRTQLDKMGEPVADRRFKGICVQSFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 199 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98019.23899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98019.23899.1 >prot_P-canaliculata_contig98019.23899.1 ID=prot_P-canaliculata_contig98019.23899.1|Name=mRNA_P-canaliculata_contig98019.23899.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp QKHENDDEISGDGQAAFKELCNTYDKVTDEVIRATMQELVNTRMEPGQNPback to top mRNA from alignment at P-canaliculata_contig98019:71..421+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98019.23899.1 ID=mRNA_P-canaliculata_contig98019.23899.1|Name=mRNA_P-canaliculata_contig98019.23899.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at P-canaliculata_contig98019:71..421+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98019:71..421+ >mRNA_P-canaliculata_contig98019.23899.1 ID=mRNA_P-canaliculata_contig98019.23899.1|Name=mRNA_P-canaliculata_contig98019.23899.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig98019:71..421+ (Pelvetia canaliculata dioecious)back to top |