mRNA_P-canaliculata_contig9795.23891.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9795.23891.1
Unique NamemRNA_P-canaliculata_contig9795.23891.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9795.23891.1 vs. uniprot
Match: D7FMX7_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.660e-16
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  439 RGRKRKILLDASGVSAERPVCAEEVFYLVLDPSFQQASLKKYFRAILAIQHGYARGSIPLWKPRGG 636
            RGR+RK LLD SG++AE  V A+E+  L+ D S QQASLK Y RA+LAIQHG  RGSIP+W+P GG
Sbjct: 1197 RGRRRKALLDPSGITAEEVVGADELLALLGDSSLQQASLKNYLRAVLAIQHGCVRGSIPVWRPDGG 1262
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BLAST of mRNA_P-canaliculata_contig9795.23891.1 vs. uniprot
Match: A0A6H5JQI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.080e-15
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  439 RGRKRKILLDASGVSAERPVCAEEVFYLVLDPSFQQASLKKYFRAILAIQHGYARGSIPLWKPRGG 636
            RGR+RK LLD SG++AE+ V A+E+  L+ D S QQASLK Y RAILAIQ+G  RGSIP+W+P  G
Sbjct:  241 RGRRRKALLDPSGITAEKVVGADELLALLRDSSLQQASLKNYLRAILAIQYGCVRGSIPVWRPVDG 306
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9795.23891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMX7_ECTSI1.660e-1663.64DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JQI7_9PHAE1.080e-1562.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9795contigP-canaliculata_contig9795:9184..10565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D7FMX7
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size663
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9795.23891.1prot_P-canaliculata_contig9795.23891.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9795 9184..9929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.6487055-CDS-P-canaliculata_contig9795:9183..93001622817341.6487055-CDS-P-canaliculata_contig9795:9183..9300Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9795 9184..9300 -
1693495234.5250585-CDS-P-canaliculata_contig9795:9183..93001693495234.5250585-CDS-P-canaliculata_contig9795:9183..9300Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9795 9184..9300 -
1622817341.6633782-CDS-P-canaliculata_contig9795:9731..99291622817341.6633782-CDS-P-canaliculata_contig9795:9731..9929Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9795 9732..9929 -
1693495234.5380967-CDS-P-canaliculata_contig9795:9731..99291693495234.5380967-CDS-P-canaliculata_contig9795:9731..9929Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9795 9732..9929 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.6747866-UTR-P-canaliculata_contig9795:9929..100661622817341.6747866-UTR-P-canaliculata_contig9795:9929..10066Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9795 9930..10066 -
1693495234.548293-UTR-P-canaliculata_contig9795:9929..100661693495234.548293-UTR-P-canaliculata_contig9795:9929..10066Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9795 9930..10066 -
1622817341.686368-UTR-P-canaliculata_contig9795:10178..102761622817341.686368-UTR-P-canaliculata_contig9795:10178..10276Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9795 10179..10276 -
1693495234.559585-UTR-P-canaliculata_contig9795:10178..102761693495234.559585-UTR-P-canaliculata_contig9795:10178..10276Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9795 10179..10276 -
1622817341.701142-UTR-P-canaliculata_contig9795:10452..105651622817341.701142-UTR-P-canaliculata_contig9795:10452..10565Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9795 10453..10565 -
1693495234.5727477-UTR-P-canaliculata_contig9795:10452..105651693495234.5727477-UTR-P-canaliculata_contig9795:10452..10565Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9795 10453..10565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9795.23891.1

>prot_P-canaliculata_contig9795.23891.1 ID=prot_P-canaliculata_contig9795.23891.1|Name=mRNA_P-canaliculata_contig9795.23891.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=105bp
MPTRISDGGESGDAPNQCRTGSLTPPSASHRGRKRKILLDASGVSAERPV
CAEEVFYLVLDPSFQQASLKKYFRAILAIQHGYARGSIPLWKPRGGHFTD
NPQQA
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mRNA from alignment at P-canaliculata_contig9795:9184..10565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9795.23891.1 ID=mRNA_P-canaliculata_contig9795.23891.1|Name=mRNA_P-canaliculata_contig9795.23891.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1382bp|location=Sequence derived from alignment at P-canaliculata_contig9795:9184..10565- (Pelvetia canaliculata dioecious)
CAGATTTCTGCTCGAGATGCCGCAGGAGCACGTGACCGTGCTTCCCGATG
CCATTGGCCGTGTCCTCAACGACTACCCGGGGATGTCGGGGAGCCACACT
CTGGTTTTCGATGGTGAGGGAATAGGCATTTTTGGGTGGGGTTATATCCC
GCAGCTAAGTGATGGAGTCTCGGTCACCGTGGCATGATAATGAGTTTCGA
CCTGATCTCCCTTCATCTCTGCAATCATCCACGCAAACACCCACTCAACG
GGGGCGACGCTGGCCGTCGAAACTTTTCCCTCTCCCCAGGCCTGACCCAA
GGCGGTAAACTACGCCGCAGCCGCCCGGTGCTACCGTCACCGACCTCGAA
CTCCGAGGTGCTCGTGTCGACATCGGAAGGGCGAAATGCCGACCATGACT
TGCCTCCCGGATGCATGATCGTTGATCGCAGCGCGGATCTCGTCAACGCC
AAAGTAAAGTCCACCTCTAACTCCAAGACGCGTTTCGTGGCTGAGGAAGC
GCCGTCCGCCGCTAAGCTGGGACAGTTAACCACCCCTGGCGGTCGCTCTA
CTCTCGGCAAGAGTTTACCACACGACGGGGCACTAAAGAGTGCTCGTGAA
TCAGCAGGGTCTGTCCATGAGGGAGCTAGGCTCTCAATGCCGACGAGAAT
ATCCGATGGTGGAGAATCGGGAGACGCCCCAAACCAATGCCGTACAGGGT
CGCTGACGCCGCCTTCCGCGAGCCATCGAGGCCGCAAGAGGAAGATTTTG
CTTGACGCGTCGGGAGTTTCCGCGGAAAGACCTGTGTGCGCGGAGGAAGT
GTTTTATCTCGTCCTGGACCCTTCTTTTCAGCAGGTGACTTGAACGGAGG
TCACTTAGGTTGTGTGAGAGCATTGTCTAAAACCCTTCTCGGCGATACGC
CATTTTAGTTGCTGCGTTGTTAGATGTCAGCGATTAATAACTTGCTGCCA
ACGTCTGGAGGAATCTGTGTAGATGCTGTACGTGTTGCCTCCATTCAGGA
ATGTTATTTTAGTGGATAGTCGTCAAAATATATAACCATCCGTCTCCATA
CGTCATGACCCCTTTCTTGAGACACTGTACCGAAAACGCCTCAATAGTAT
GTATTTTTAATCCGAGGGCACCTCACCCCATTTCGCGACGTAAAAATGAA
CCCGACATTCGAAGTTGCACCCATCGCTCAGATGCATCATGTTATCCATC
GCCCGTGACTTATTTTGGGCAATGTCAGTCGTAATTCCTCGTCTCTCCCC
CCGTACGGTTTCAAGGCATCTCTTAAGAAGTACTTTCGAGCGATTCTCGC
CATTCAGCACGGGTACGCACGGGGATCGATTCCATTATGGAAGCCTAGAG
GGGGGCACTTTACGGACAACCCGCAACAGGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9795:9184..10565-

>mRNA_P-canaliculata_contig9795.23891.1 ID=mRNA_P-canaliculata_contig9795.23891.1|Name=mRNA_P-canaliculata_contig9795.23891.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at P-canaliculata_contig9795:9184..10565- (Pelvetia canaliculata dioecious)
ATGCCGACGAGAATATCCGATGGTGGAGAATCGGGAGACGCCCCAAACCA
ATGCCGTACAGGGTCGCTGACGCCGCCTTCCGCGAGCCATCGAGGCCGCA
AGAGGAAGATTTTGCTTGACGCGTCGGGAGTTTCCGCGGAAAGACCTGTG
TGCGCGGAGGAAGTGTTTTATCTCGTCCTGGACCCTTCTTTTCAGCAGAT
GCCGACGAGAATATCCGATGGTGGAGAATCGGGAGACGCCCCAAACCAAT
GCCGTACAGGGTCGCTGACGCCGCCTTCCGCGAGCCATCGAGGCCGCAAG
AGGAAGATTTTGCTTGACGCGTCGGGAGTTTCCGCGGAAAGACCTGTGTG
CGCGGAGGAAGTGTTTTATCTCGTCCTGGACCCTTCTTTTCAGCAGGCAT
CTCTTAAGAAGTACTTTCGAGCGATTCTCGCCATTCAGCACGGGTACGCA
CGGGGATCGATTCCATTATGGAAGCCTAGAGGGGGGCACTTTACGGACAA
CCCGCAACAGGCCGCATCTCTTAAGAAGTACTTTCGAGCGATTCTCGCCA
TTCAGCACGGGTACGCACGGGGATCGATTCCATTATGGAAGCCTAGAGGG
GGGCACTTTACGGACAACCCGCAACAGGCC
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