Homology
BLAST of mRNA_P-canaliculata_contig9794.23890.1 vs. uniprot
Match:
D7FVQ4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ4_ECTSI)
HSP 1 Score: 102 bits (254), Expect = 1.360e-22
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 1
Query: 1 VSTKFADVTRSNKEGESAFEARLGDMEHQLRQAEKQASDAKTECERVRERAERKLAGKEAELNRLWERLSSKKEKFAAQKVALERESKALNKRLSEARLEEEGMR 315
VS+ FA+ S KEGE++F+A+LGD+E L + EKQ ++ EC R++E A+R++ KEAEL L ERLS KK+KFAAQK++LE+E K L +LSE R+ EEG+R
Sbjct: 469 VSSNFAEAANSKKEGETSFDAKLGDLEKHLNKTEKQLLGSQAECVRIKEAAQREVKEKEAELESLRERLSRKKDKFAAQKLSLEQEIKTLTDKLSEGRVVEEGIR 573
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9794.23890.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.36e-22 / Id = 53.33 Sequence D7FVQ4_ECTSI
Match Name E-value Identity Description
D7FVQ4_ECTSI 1.360e-22 53.33 Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 99.8 Seed ortholog evalue 8.4e-19 Seed eggNOG ortholog 2880.D7FVQ4 KEGG ko ko:K10406 EggNOG free text desc. microtubule motor activity EggNOG OGs COG5059@1,KOG0239@2759 COG Functional cat. Z Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04812 Hectar predicted targeting category other localisation Exons 3 Model size 419 Cds size 318 Stop 1 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817341.5731082-UTR-P-canaliculata_contig9794:10535..10634 1622817341.5731082-UTR-P-canaliculata_contig9794:10535..10634 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9794 10536..10634 - 1693495234.4709363-UTR-P-canaliculata_contig9794:10535..10634 1693495234.4709363-UTR-P-canaliculata_contig9794:10535..10634 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9794 10536..10634 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817341.587117-CDS-P-canaliculata_contig9794:10634..10740 1622817341.587117-CDS-P-canaliculata_contig9794:10634..10740 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9794 10635..10740 - 1693495234.4858594-CDS-P-canaliculata_contig9794:10634..10740 1693495234.4858594-CDS-P-canaliculata_contig9794:10634..10740 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9794 10635..10740 - 1622817341.5993488-CDS-P-canaliculata_contig9794:11139..11228 1622817341.5993488-CDS-P-canaliculata_contig9794:11139..11228 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9794 11140..11228 - 1693495234.496172-CDS-P-canaliculata_contig9794:11139..11228 1693495234.496172-CDS-P-canaliculata_contig9794:11139..11228 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9794 11140..11228 - 1622817341.6115754-CDS-P-canaliculata_contig9794:11762..11885 1622817341.6115754-CDS-P-canaliculata_contig9794:11762..11885 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9794 11763..11885 - 1693495234.506925-CDS-P-canaliculata_contig9794:11762..11885 1693495234.506925-CDS-P-canaliculata_contig9794:11762..11885 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9794 11763..11885 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9794.23890.1
>prot_P-canaliculata_contig9794.23890.1 ID=prot_P-canaliculata_contig9794.23890.1|Name=mRNA_P-canaliculata_contig9794.23890.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=106bp
VSTKFADVTRSNKEGESAFEARLGDMEHQLRQAEKQASDAKTECERVRER back to top mRNA from alignment at P-canaliculata_contig9794:10536..11885-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9794.23890.1 ID=mRNA_P-canaliculata_contig9794.23890.1|Name=mRNA_P-canaliculata_contig9794.23890.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at P-canaliculata_contig9794:10536..11885- (Pelvetia canaliculata dioecious)GTTTCCACTAAATTCGCTGATGTTACCCGCAGCAACAAGGAAGGCGAGAG
CGCATTTGAAGCCAGGCTTGGCGACATGGAACACCAACTCCGCCAGGCTG
AGAAGCAAGCCTCGGATGCCAAA GTAAGAAATGAACGACATGTAGCTACA
CCGATATCGATGTGTTGCGACCGATAAAAGACCTAAGACTGGCATATCAA
CGGCAGGCGTTCGTTGCGACCGAGAGAATCTCCGTCTCTTTCCCTCACAT
CAGTATACCAGTATCTAAAGATCTACCTTCACGAAAACCTTAGCGAAACA
AATGAGACTTCCAAGTGCGCCCGGTCTGGTCTTGCTCAATGGCATACGAG
GCTCTGCAACTCGAGCAATCACCATTTTAATTATATACTTAAGATGGCCT
TGTGATGGTACCTGGTACAATATTGTTATAACAGTCGTGTAATATTCGCA
TACGTTTGGTATGTTAGTGGTATGATAACAATTTAATAGTGTGCTGGGAG
TTGTCGGGTTGCGCCCCGAGTAGCTCAATCCATACGCACACCACTGTAAC
ATTATTCATGATCATGACGGCATGCAATATACAATTATAGACTATAATAC
TGTAGTATGAAAGTCATCAACATCGATTATCAATATCAATATCTTCATTA
TTTCCAGACGGAGTGCGAACGTGTCAGGGAACGTGCGGAGCGCAAGCTGG
CGGGGAAGGAAGCAGAGCTCAACAGGTTATGGGAACGACTGTCAAG GTAA
ATCACGGTACTATATTAAAGCATTTCACCGCGAGATGTCAATATTTGGTG
CCTTGGAGTGTGGAAATTATCGCGAAAGGAATTTATTTCGCAACCGATAA
CTTGCTGGACCCATCGAGATAAACCTCCACCGAACTTCCAAACAGTGGTG
GTGCATAGTGTGGTGTATACTGTGGTGAAAAGTAATATTATGTCACGTCA
TGTACATTTCGGAGTGCTGCCGCTCACACTTTATATGCCGTATCACAATT
TGCGATTATTTGAGCACGCAGACAGTGCGTATCGCATCATGCTTTGATTT
GACCAAAAAATGCGAAAAAAACGATTGTGCCCGGAACGACAACCTCCAAG
CTATTTTCATGCAATCTTGTTGCAATCTTTATGTGTCCTGGTCAGTAAGA
AAGAAAAGTTCGCTGCTCAGAAAGTGGCGCTGGAGCGAGAGAGTAAGGCG
TTGAACAAAAGGCTCTCGGAGGCTCGACTTGAGGAGGAGGGCATGAGGTG
A TGCCGACAGCGTATTATGTAGCTAGCTCTTCCTGTCTCTAAATGGTACA
CTTCCGTAAATTTTGACATTTCACGTAATAGCCAACACTCGCATTCCCTG
back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9794:10536..11885-
>mRNA_P-canaliculata_contig9794.23890.1 ID=mRNA_P-canaliculata_contig9794.23890.1|Name=mRNA_P-canaliculata_contig9794.23890.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at P-canaliculata_contig9794:10536..11885- (Pelvetia canaliculata dioecious) back to top