mRNA_P-canaliculata_contig9784.23880.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: D8LLP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP8_ECTSI) HSP 1 Score: 287 bits (735), Expect = 2.370e-93 Identity = 153/210 (72.86%), Postives = 172/210 (81.90%), Query Frame = 1 Query: 175 GLLD-DPTKVALFALGGLAVAAAGFQAVVYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTA-----------TSKELASEVARVLKPGGALLFVEKGEARELIEEVSEALGTVEVNIVRNLFDPYCVGLGTKTKV 768 GLLD DP K+ LFALGGL VAAAGF VYWRMQYVVAALL+NRVP I+GGAEVLELSAKDTKTLYYMPTGGVRR+TLSTVKDLE EIVNGAAIQAK+P AL+RKQE ++ C + TMDCVVSV+GFSGGV+A A T K L SEVARVLKPGG +LFVEKGE++EL++ + EALGTVEVN+V NL DPYCV + TKTKV Sbjct: 102 GLLDMDPAKLGLFALGGLGVAAAGFSTAVYWRMQYVVAALLTNRVPAIQGGAEVLELSAKDTKTLYYMPTGGVRRLTLSTVKDLENEIVNGAAIQAKIPTALVRKQEGTKISCTSGTMDCVVSVYGFSGGVAAAAASNKGANAAAAGTLKGLVSEVARVLKPGGTVLFVEKGESQELVDALREALGTVEVNMVTNLVDPYCVAMATKTKV 311
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A836CAE9_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE9_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.920e-56 Identity = 101/193 (52.33%), Postives = 137/193 (70.98%), Query Frame = 1 Query: 187 DPTKVALFALGGLAVAAAGFQAVVYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVEKGEAREL-IEEVSEALGTVEVNIVRNLFDPYCVGLGTKT 762 D V + AL G AV A F A+VYWRMQY+ AALL+ RVP + GGA+VL+LSAKD+K LYY+P+GG RRV LST+ DL++++ + AA+QA+VP+ +RKQ + C T MD V+S+ GF+G + +K L EV RVLKPGG L+FVE+G + +L I+E+ +++G EVNIV NLF PY V + TKT Sbjct: 80 DGNTVTVAALLGTAVGLAAFNAIVYWRMQYITAALLTRRVPRVAGGADVLQLSAKDSKALYYLPSGGARRVILSTITDLKQDLADAAAVQARVPVVSVRKQLDDTLDCPTGIMDAVISLGGFNGSTN-----TKRLIKEVTRVLKPGGQLIFVEQGGSNDLLIQELQKSVGETEVNIVSNLFRPYTVAVSTKT 267
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A388LJ85_CHABU (Methyltransf_11 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LJ85_CHABU) HSP 1 Score: 83.6 bits (205), Expect = 8.580e-15 Identity = 61/196 (31.12%), Postives = 96/196 (48.98%), Query Frame = 1 Query: 256 VYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVEKGEA--------------------------RELIEEVS--EALGTVEVNIVRNLFDPYCVGLGTK 759 VY+RMQYV AA+L+ VP +GGA VL+L+ K LYY+P V+ + ++ ++++ A+QA VP+ +G + + ++D VVS++ T + + E RVLKPG ++FVE A R ++E+ E LGTVE ++V DP+ VG+G K Sbjct: 186 VYFRMQYVTAAMLARHVP--RGGARVLDLNVAGGKNLYYLPKDVVQVIAVNP--KASRQLLDNQAVQAGVPIVFEDMTASGALDLPSNSVDAVVSIYALCS-----TPDVQNILKEAVRVLKPGKPIIFVENVAASGGIVLAAQRALEAAHNLTGWGVHTVRNTLQEIKTVEELGTVESDMVAEFQDPHVVGIGIK 372
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A1Y1HWE2_KLENI (Methyltransf_11 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWE2_KLENI) HSP 1 Score: 68.9 bits (167), Expect = 3.090e-10 Identity = 56/150 (37.33%), Postives = 87/150 (58.00%), Query Frame = 1 Query: 217 GGLAVAAAG-FQAVVYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDT--KTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELAS---EVARVLKPGGALLFVE 648 G L++A G +A VY+RMQY+ AA+++ VP +GGA +++LS KD + L+Y+P V+ VT+ D + + I+A VP+ +R A R+ A++D VV V+G S T+++ A+ E ARVLKPG +FVE Sbjct: 15 GALSIAGFGVLRAAVYFRMQYITAAMVARHVP--RGGARLVDLSPKDAAGRNLFYLPKDAVQ-VTVFDGAD-KGAYLQELGIRAGVPVD-VRPVPAARMNLPPASVDAVVCVYGLS--------TTRDAAAVLREAARVLKPGKPFIFVE 151
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A7S0SBL0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBL0_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 7.240e-9 Identity = 49/148 (33.11%), Postives = 72/148 (48.65%), Query Frame = 1 Query: 205 LFALGGLAVAAAGFQAVVYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVE 648 L LGG A+A + VVYWR+QY+ AA+++ VP G A VLE + LYY P G + + D +E+++ +I A VP+ + G T+D VV+ G + + + E R LKPG L+FVE Sbjct: 185 LSVLGGFAIA----KTVVYWRVQYITAAMIAKHVPP--GAARVLEFGVGQGRNLYYYPKG--TGMVVGVDPDAKEDLLIQVSIAAGVPLVSKAQSLEAPTGQGDGTLDAVVTT-----GALRRSNDPEAIVREAGRCLKPGAPLVFVE 319
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A7S4GHM6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GHM6_9EUGL) HSP 1 Score: 61.6 bits (148), Expect = 6.390e-8 Identity = 51/147 (34.69%), Postives = 78/147 (53.06%), Query Frame = 1 Query: 229 VAAAGFQAVVYWRMQYVVAALLSNRVPTIKG-GAEVLELSAKDTKTLYYMPTG--GVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVEKGEA 660 +A ++ VVY+++QY+ AAL+ N VP +G A LEL + LYY P GV V + +L ++ ++ + + ATA++DCVVS+ A++K LA EVARVL+PGG L+FVE G++ Sbjct: 1 LAVVAYRTVVYFQLQYITAALIGNHVP--RGVNATCLELGIGGGRNLYYYPNDIKGVIGVDSKSNPELLQKTAEKCFQSVQLIESPTAAADTWGKKVATASVDCVVSI-------QTDGASAKVLA-EVARVLRPGGKLIFVEPGDS 137
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A7S3UC57_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UC57_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 1.250e-7 Identity = 61/181 (33.70%), Postives = 85/181 (46.96%), Query Frame = 1 Query: 256 VYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMPTGGVR--RVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSV--FGFSGGVSAGTATSKELASEVARVLKPGGALLFVEK--GEARELIEEVSEALGTVEVNI----VRNLFDPYCVGLGTKTKV 768 VY+R+QY+ AA++ N VPT G V EL K LYY P G V V ++ K L E+ A+ A VP+ +I A G A++D VVS G + V + E R+LKPG L+FVE G A E + V G V I R+ + P+ +G+ K + Sbjct: 155 VYFRLQYITAAMIGNNVPT--GETRVAELGIGTGKNLYYYPEGTVLVYGVDMTAKKGLLEK----TAVAAGVPVEVINAGPA-ETGLPNASVDAVVSTGALGIADDV-------RGCVKESLRILKPGRPLIFVESMTGAASEAPQVVRNEGGFKAVQIDEEWERSPWAPHAIGVAIKEDI 321
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A7R9TVQ1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TVQ1_MICPS) HSP 1 Score: 60.5 bits (145), Expect = 2.740e-7 Identity = 48/154 (31.17%), Postives = 74/154 (48.05%), Query Frame = 1 Query: 190 PTKVALFALGGLAVAAAGFQAVVYWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMP-TGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVE 648 P L LGG A+A +AVVYWR+Q++ AA++ VP VLE K LYY P T G+ + D +E+++ ++ + VP + G A++D VV+ G +A ++ +E R+LKPG L+F E Sbjct: 38 PLGATLALLGGFAIA----KAVVYWRVQFITAAMIGRHVPPT--ARRVLEYGVGAGKNLYYYPKTVGM---VVGVDPDAKEDLLIQVSVASAVPFVAKAQPNEDPTGQPDASIDAVVTT-----GALGKSADPAKIIAEAGRILKPGAPLVFCE 177
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A6V1P0T4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0T4_HETAK) HSP 1 Score: 60.8 bits (146), Expect = 2.850e-7 Identity = 71/211 (33.65%), Postives = 95/211 (45.02%), Query Frame = 1 Query: 157 ALSPSDGLLDDPTKVALFALGGLAVAAAGFQAVVYWRMQYVVAALLSNRVPTIKG-GAEVLELSAKDTKTLYYMPTGGVRRVTLSTVKD-LEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVEK-GEARELIEEVSEALGTVEVNIVRNLFD----PYCVGLGTKTKV 768 ALS S +P VA +G V AG A+ YW +QY+ A++LSN +I+G VLEL AKD K++YY G V ++TL D + I + Q + I+ D VV V G + +G E + A VLKP G +F+E+ GEA EV G E FD P +GLGT T V Sbjct: 46 ALSDS---FSEPATVAAAIVGLGVVGLAGASALNYWNVQYITASMLSN---SIRGQNLAVLELGAKDCKSMYYFGEGCVSQLTLQGNPDKINPGIAKSSGQQLGINSVAIKASAKDL----PPIYDFVVCVNGLAELGMSGA----EAINLAASVLKPEGTFVFIEQLGEA-----EVDAMAGAAEAGGRYQSFDFDAVPGPLGLGTPTVV 237
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Match: A0A7S4EWP4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EWP4_CHRCT) HSP 1 Score: 57.0 bits (136), Expect = 5.830e-6 Identity = 53/170 (31.18%), Postives = 85/170 (50.00%), Query Frame = 1 Query: 259 YWRMQYVVAALLSNRVPTIKGGAEVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKVPMALIRKQEAGRVGCATATMDCVVSVFGFSGGVSAGTATSKELASEVARVLKPGGALLFVEKG--EARELIEEVS-EALGTVEVNIVRNLFDPYCVGLGTK 759 YW+M++V A ++N VP G+EVLEL + D K +YY+ + VTL + L+E + AA + + +++++ E + + D + + +A A + S +AR LKPGG L+F+EK +A L EE E L VE N Y +G+ K Sbjct: 89 YWKMEFVKAQHITNNVPA---GSEVLELGS-DAKNIYYLKSPSA--VTLISETPLQEPPIREAAAKLSISLSILQG-ELSSLQLRASGYDAALCMQQLERVPAARQAV---VCSLLARTLKPGGRLIFIEKASIDAPALFEEAQLEVLHEVENN--------YAIGIALK 240 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9784.23880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9784.23880.1 >prot_P-canaliculata_contig9784.23880.1 ID=prot_P-canaliculata_contig9784.23880.1|Name=mRNA_P-canaliculata_contig9784.23880.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=256bp AAFRRCRGIAPTTEARLSRAIFSSAVPGIEATEDALQSWSGVDGMQLPPCback to top mRNA from alignment at P-canaliculata_contig9784:149..1997- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9784.23880.1 ID=mRNA_P-canaliculata_contig9784.23880.1|Name=mRNA_P-canaliculata_contig9784.23880.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1849bp|location=Sequence derived from alignment at P-canaliculata_contig9784:149..1997- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9784:149..1997- >mRNA_P-canaliculata_contig9784.23880.1 ID=mRNA_P-canaliculata_contig9784.23880.1|Name=mRNA_P-canaliculata_contig9784.23880.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at P-canaliculata_contig9784:149..1997- (Pelvetia canaliculata dioecious)back to top |