mRNA_P-canaliculata_contig9772.23872.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI) HSP 1 Score: 222 bits (565), Expect = 5.680e-60 Identity = 120/199 (60.30%), Postives = 140/199 (70.35%), Query Frame = 3 Query: 3 QAACGYPANPMAVPQAAQRLRLDRQGRGGMTAVHLAAFHGYEDALQMLLHGGADPNAVCEDGETPLHTACTGGSIRCVTLLLDNGSNPLATDAKGFVPCEKPIAERRDDMKNLLEAKAFQATPANLLQLRADLAEVALQIDAEEELFVRKGVAIKYLRKALKKKEIEMIRLRQAVESRDIDLRNLSDRMDGVYQTLSVV 599
Q ACGYP NP AV A++RLRL+R GRGGM+AVHLAAFHGY D+L++LL G+DPNAV +DGETPLHTAC GGSI CEK IA R +MK+LLEAKAFQATPANLL LRADLAEVALQIDAEE+LFVRKGVAIKYLRKALKKK++++ L+DRM+ V++ L V
Sbjct: 965 QEACGYPHNPNAVAVASKRLRLNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDGETPLHTACNGGSILXXXXXXXXXXXXXXXXXXXXXXCEKHIAGGRQEMKHLLEAKAFQATPANLLALRADLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKDVDLGXXXXXXXXXXXXXXXLADRMESVHKLLKGV 1163
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A151ZCB8_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCB8_9MYCE) HSP 1 Score: 68.6 bits (166), Expect = 1.390e-8 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 87 GMTAVHLAAFHGYEDALQMLLHGGADPNAVCEDGETPLHTACTGGS--------IRCVTLLLDNGSNP 266
GMTA+H+AAFHGY + + L HGG++ N+ C DG TPL A G S ++ +TLLLD G++P
Sbjct: 439 GMTALHVAAFHGYSECVGTLSHGGSEVNSKCRDGSTPLFKATMGASSSEQRESNLQSITLLLDKGADP 506
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A8J4V1Z6_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V1Z6_9MYCE) HSP 1 Score: 68.6 bits (166), Expect = 1.450e-8 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3 Query: 87 GMTAVHLAAFHGYEDALQMLL--HGGADPNAVCEDGETPLHTACTGGS--------IRCVTLLLDNGSNPLATDAKGFVP 296
GMTA+H+AAFHGY +AL L+ +GGA+ NA C+DG TPL A G S + C++LLLD G++ + +G P
Sbjct: 543 GMTALHVAAFHGYPEALNTLILSNGGAEVNAKCKDGSTPLLKATMGASGSESKENSLSCISLLLDKGADANIPNDQGETP 622
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A5D6XM11_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM11_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.150e-7 Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 3 Query: 93 TAVHLAAFHGYEDALQMLLHGGADPNAVCEDGETPLHTACTGGSIRCVTLLLDNGSNPLATDAKGFVPCEKPIAERRDDMKNLL 344
TA+H A HG +Q+L+ GADP+AV E G TPLH A G++RC L+L+ G+ A + P A R D+ LL
Sbjct: 42 TALHYACRHGQVYVVQLLVGRGADPDAVDESGNTPLHLAAGWGNLRCCVLMLEAGARVTAKNLAQQTPLSVAQALSRKDIAALL 125
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: Q54Q43_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54Q43_DICDI) HSP 1 Score: 63.9 bits (154), Expect = 4.270e-7 Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 57 RLRLDRQGRGGMTAVHLAAFHGYEDALQMLL--HGGADPNAVCEDGETPLHTACTGGS------IRCVTLLLDNGSNPLATD 278
R+R D+ GMTA+H+AAFHGY + L L +GGA+ N+ C DG TPL A G + + CV LLD G++P T+
Sbjct: 538 RIRNDQ----GMTALHVAAFHGYSNCLDELALSNGGAEVNSKCRDGSTPLMKATMGAAGSENRDVSCVVSLLDKGADPNITN 615
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A1E3QMY4_9ASCO (DUF2433 domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QMY4_9ASCO) HSP 1 Score: 60.5 bits (145), Expect = 5.180e-6 Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 3 Query: 66 LDRQGRGGMTAVHLAAFHGYEDALQMLLHGGADPNAV-CEDGETPLHTACTGGSIRCVTLLLDNGSNP--LATD------AKGFVP 296
++ Q GG TAVHLAA HG +D L +LL AD V +DG+TPLH C G + C+ +L P + TD KG+VP
Sbjct: 117 INLQNLGGQTAVHLAATHGLDDMLSLLLDFQADLLLVELQDGDTPLHLCCKYGHLNCINQILTRTPAPGQIHTDLTEVKNTKGWVP 202
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: UPI0002483E18 (ankyrin repeat domain-containing protein n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI0002483E18) HSP 1 Score: 56.2 bits (134), Expect = 9.760e-6 Identity = 35/86 (40.70%), Postives = 44/86 (51.16%), Query Frame = 3 Query: 66 LDRQGRGGMTAVHLAAFHGYEDALQMLLHGGADPNAVCEDGETPLHTACTGGSIRCVTLLLDNGSNPL-----ATDAKGFVPCEKP 308
+D G T + A F G DA LL GADPNAV + + PLH A + G+I+ V LLL G+ PL T A +P KP
Sbjct: 65 IDECEEDGTTPLISAVFVGAFDAAVALLELGADPNAVSDTYDNPLHCAISDGNIKLVDLLLKGGATPLYKMNCGTTAFDVLPNNKP 150
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A7V8AYK3_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7V8AYK3_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 1.140e-5 Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 3 Query: 87 GMTAVHLAAFHGYEDALQMLLHGGADPNAVCEDGETPLHTACTGGSIRCVTLLLDNGS 260
G TA+H A G+++ L+ LL GADPNA C DG TPL A R V LLLD+G+
Sbjct: 73 GRTALHEAVAAGHDEILRALLEAGADPNAACHDGWTPLCEASKFSQSRAVRLLLDHGA 130
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A2E9FXI6_9RHOB (Uncharacterized protein n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9FXI6_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 1.340e-5 Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 3 Query: 93 TAVHLAAFHGYEDALQMLLHGGADPNAVCEDGETPLHTACTGGSIRCVTLLLDNGSN 263
TA+H AAF+GYE +++L+ GAD NAV E G+TPL++A ++ V LL++G++
Sbjct: 66 TALHQAAFYGYEKIIELLVAKGADINAVNEAGQTPLYSAIHADHVQAVEALLNHGAS 122
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Match: A0A7S3RT37_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RT37_EMIHU) HSP 1 Score: 57.4 bits (137), Expect = 3.310e-5 Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 3 Query: 69 DRQGRGGMTAVHLAAFHGYEDALQMLLHGGADPN-AVCEDGETPLHTACTGGSIRCVTLLLDNGSNPLATDAKGFVP--CEKPIAER-----RDDMKNLLEAKAFQATPANLLQ-LRADLAEVALQI 422
D +GRG A+H+AA HG++D L+++L+ GAD A+ G PLH A + LL+D ++P DA G P C P A + +M + A + LL+ +RA +VA Q+
Sbjct: 104 DGRGRG---ALHVAAKHGHDDVLRVMLNAGADVELAMPVSGSRPLHMAAAAQERQATKLLIDANADPAQPDAAGRTPAICVPPAAIELQYLLQREMLDACHAAGRRYNSTELLEAVRAGRVQVAQQL 227 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9772.23872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9772.23872.1 >prot_P-canaliculata_contig9772.23872.1 ID=prot_P-canaliculata_contig9772.23872.1|Name=mRNA_P-canaliculata_contig9772.23872.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=194bp MAVPQAAQRLRLDRQGRGGMTAVHLAAFHGYEDALQMLLHGGADPNAVCEback to top mRNA from alignment at P-canaliculata_contig9772:5365..7474+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9772.23872.1 ID=mRNA_P-canaliculata_contig9772.23872.1|Name=mRNA_P-canaliculata_contig9772.23872.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2110bp|location=Sequence derived from alignment at P-canaliculata_contig9772:5365..7474+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9772:5365..7474+ >mRNA_P-canaliculata_contig9772.23872.1 ID=mRNA_P-canaliculata_contig9772.23872.1|Name=mRNA_P-canaliculata_contig9772.23872.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at P-canaliculata_contig9772:5365..7474+ (Pelvetia canaliculata dioecious)back to top |