mRNA_P-canaliculata_contig9768.23870.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI) HSP 1 Score: 158 bits (399), Expect = 4.570e-38 Identity = 116/394 (29.44%), Postives = 156/394 (39.59%), Query Frame = 3 Query: 324 TCSNGFSGIESSGGDVCCAVECGRCGGSGCSD--LTGGEDN--CCVGKIYDNGGLCTTEGAAPCIIYDDTDEEEASEVATGTXXXXXXXXXXXXXXPMSYYAGYVVGTSYIGCFEET---GSDPFSYRVEITGMTPELCYAECTTKDALYMGLMGSNECACGEDEDYLDSDKTSGTCDSVCEGDDSICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFDGEEPFDAVVGDEGMTPEMCYEICTMVSARYFGVYAGKECGCGSNSDYIVF------GGTPGTCDMSCAGDSDYSCGGTEAYDMYQLVDNNIGLDDDSPEGGLLECSNGLAGVESSDGSVCCAAACGSCDGSRCVGTGGCCAEYIKAKYDTCSEKQSAPCVMD 1466 TCSNG GIES+ GDVCC CG CGG C++ + G D+ CC G I +G C+ APCII DD +E A + + T G G + C E G + G+ C TK+ + G+ C + ED S V I G G Y E+PF +T E CYE+C S+ YFG+ G C CG ++ T TC +C G D +CGG +A+D+YQ+ L C+ G+ GVE++ G VCC +CG C G RCVG GGCC I+++ D C +APCV + Sbjct: 51 TCSNGIEGIESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSENQMAPCII-DDASQESAGDTCSNTDGVE----------------GISSGDGDVCCPSECVLCGGRDCTEAALAAGLADGDCCVSDITKEGVKCSDSGAAPCVAYDSEDETGSPLVQEASTPVY-----IALGCGKIGDY------------------------------------EDPFTVSSTVSDLTAEACYELCASESSLYFGLVEGNVCSCGDEETFVETFLDTYDEQTAATCSTACPGSPDETCGGAQAFDLYQI---------------LPTCTGGIVGVEAASGDVCCPFSCGECGGDRCVGEGGCCEHTIQSREDLCEYTNAAPCVFN 371
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 142 bits (358), Expect = 5.680e-31 Identity = 137/429 (31.93%), Postives = 185/429 (43.12%), Query Frame = 3 Query: 45 ETCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGS----------SPSTTTXXXXXXXXXXXXXXXXXTCSN--GFSGIESSGGDVCCAVECGRCGGSGCSDLTGGEDNCCVGKIYDNGGLCTTEGAAPCIIYDDTDEEEASEVATGTXXXXXXXXXXXXXXPMSYYAGYVVGTSYIGCFEETGSDPFSYRVEITGMTPELCYAE---CTTKDALYMGLM--GSNECACGEDED------YLDSDKTSGTCDSVCEGDDSICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFD--GEEPFDAVVGDEGMTPEMCYEICTMVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSDYSCGGTEAYDMYQLVDNNIG 1256 + C + + GI+ +G+ CC A+C CGG GC+ L A +CC+S I D G C T PCI+ S P+ XXXXXXXXXXXXXXXX TC N G G+ES G CC C CGG GCS G +CCV I G C G APC I D EA P + + G E+ S + + CY + C D G++ S E C D D Y + +GT + D +I GG D S D D+D +G +D Y + CY + + G+E MT +C+E C SA YF ++ G C CG+ Y+ G CD C+GD +CGG YD+Y+L+++++G Sbjct: 2882 DVCSNGIPGIQ----TGNACCLAECGGCGGTGCAQLGGG-LGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPAPSPVAMPTAXXXXXXXXXXXXXXXXXXSTCPNAGGIPGVESPGSSACCPTSCVSCGGVGCSSR-GEVTDCCVSAIMTKGQACEVSGTAPCYIGDGG---EAPAPTPEPVRPTPVTMEPTTEPPAAPTTQGLCSNGVPGI--ESASGDYCCPATCRACDGDNCYLDGLFCCGDDIEETGVLCDDSEEAPCIIDIDGGGFGTYAPTGAPTGT---PFDFDPTISGGNDD---------SMD------VDIDGDGNVDSYEHVGCYALSPTASVELEKLDGEEQMTKMLCFEACAAESADYFALFKGSVCTCGNEGGYLTMPMEMGICDTPCSGDVTATCGGYYDYDLYELMESDVG 3281
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 114 bits (284), Expect = 2.030e-22 Identity = 65/162 (40.12%), Postives = 85/162 (52.47%), Query Frame = 3 Query: 45 ETCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTE-LDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCS------DLTGGEDNCCVGKIYDNGGLCTTEGAAPCII 509 +T +D GI DG+G VCC C CGG+GCS S L + CC ++ G+YCDDT+E PCIIGS+P T TCSNG GI+ G +VCC + CG+CGG+GC +L G ++CC ++ C AAPCII Sbjct: 571 DTQIDGTEGI---DGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGISEESADDTQ---TCSNGIEGIDHKG-EVCCPLACGQCGGTGCGSAGSAFELDG--ESCCSSQVLAGNVYCEDTNAAPCII 723
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.090e-22 Identity = 63/166 (37.95%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 51 CVDNVSGIRSSDGSGDVCCNAKCPACGGEGCS-YPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTG----GEDNCCVGKIYDNGGLCTTEGAAPCIIYDDTDEEE 533 C D + GI DG+G VCC +C C G GC+ + + L + CC ++DAG YCD T E PCI GS P CS G GI+ +G VCC +ECG+CGG+GCS G ++CC + +G C G APCI Y D+ E Sbjct: 48 CNDGIEGI---DGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSPPE-------------------GECSGGIEGIDGNG-VVCCPLECGQCGGTGCSSAGAASGLGSESCCESGVDSSGRYCDVTGEAPCI-YGSPDDGE 189
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.150e-21 Identity = 68/179 (37.99%), Postives = 84/179 (46.93%), Query Frame = 3 Query: 45 ETCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTE-LDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTG----GEDNCCVGKIYDNGGLCTTEGAAPCII-----YDDTDEEEASEVAT 551 +TC D GI DG+G VCC C C G+GC S L + CC ++ G+YCDDT+E PCIIGS P T TCS+G GI+ +G VCC + CG+C G GC G ++CC + G C APCII DD D E A E T Sbjct: 336 QTCSDGTEGI---DGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQ-------TCSDGTEGIDGNG-VVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQT 503
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI) HSP 1 Score: 103 bits (257), Expect = 2.920e-21 Identity = 60/158 (37.97%), Postives = 77/158 (48.73%), Query Frame = 3 Query: 48 TCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSST-ELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCS----DLTGGEDNCCVGKIYDNGGLCTTEGAAPCI 506 TC D + GI DG+G VCC C CGGEGC+ + L + CC ++ A YCD T + PCI GS P C+NG GI+ +G VCC ++CG+CGG GCS D G ++CC G + C G APCI Sbjct: 23 TCNDGIEGI---DGNGVVCCPRHCGQCGGEGCTGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGSPPE-------------------GECNNGIEGIDGNG-VVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCI 157
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 106 bits (265), Expect = 3.070e-20 Identity = 62/153 (40.52%), Postives = 80/153 (52.29%), Query Frame = 3 Query: 51 CVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTGGEDNCCVGKIYDNGGLCTTEGAAPCII 509 C + GI++SD VCC+ C +CGG GCS E +CC +R +G C T E PCI+ +SP +T TC G G+++S DVCCA+ CG CGG GCSD GGEDNCC +I C+ G APCI+ Sbjct: 332 CDGGIVGIQASD----VCCSLSCESCGGSGCSGRDGGE---DECCGGGVRASGRDCSVTGEAPCIV-TSPEPSTPAPTPAPTRAAG-----TCDGGIVGVQAS--DVCCALSCGSCGGDGCSDRDGGEDNCCGVEIRTANLDCSVTGEAPCIV 469
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 1.280e-16 Identity = 75/269 (27.88%), Postives = 112/269 (41.64%), Query Frame = 3 Query: 615 AGYVVGTSY--IGCFEETGSD---PFSYRVEITGMTPELCYAECTTKDALYMGLMGSNECACGEDEDYLDSDKTSGTCDSVCEG-DDSICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGE-----------------------------------------------------IDGYAYKKCY-DFDGEEPFDAVVGDEG-MTPEMCYEICTMVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSDYSCGGTEAYDMYQL 1238 AG V SY IGC+ + + P + M+ E C A C ++ + Y G+ NEC CG+D DY + +GTC+ C G D+++CGG +F LY+ G SD D G+ + G + CY D+D + D + DE +TP C E C GV G +C CG+ DY +G GTC+ SC+GDS+ +CGG E+ +++ + Sbjct: 435 AGVVASDSYEYIGCYNDDTQNSLLPVLALDDDDNMSVEKCIAACVSEGSQYAGIKEGNECRCGDDVDY--TLHGTGTCNFSCTGSDETVCGGEYAFDLYEIHGDGGVDGVV-SSDTDDQGDDTGGVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGGTHMGCYEDYDSDPILDFLYEDEDTLTPASCIESCREEGEELAGVQGGSQCWCGTTDDYTRYG--TGTCNFSCSGDSEQTCGGRESANVWTV 698
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 3.500e-13 Identity = 68/218 (31.19%), Postives = 103/218 (47.25%), Query Frame = 3 Query: 642 IGCFEETGSDPFSYRVEIT--GMTPELCYAECTTKDALYMGLMGSNECACGE-DEDYLDSDKTSGTCDSVCEGDDS-ICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFDGEEPF--DAVVGDEGMTPEMCYEICTMVSARYFGVYAGKECGCGS-NSDYIVFGGTPGTCDMSCAGDSDYSCGGTEAYDMYQLVDNNIGLDDDSP 1274 +GC+E+ D + ++ MT ELC E T + Y EC CG D DY +++G C C GD S CGG ++ +Y + S+ S T + + CY D E+ D V+ D MT E+C C + YF G+EC CGS +DY + G + C +C+GD+D +CGG +A ++Y+ D++ SP Sbjct: 200 LGCYEDDPEDRIMDNLALSDSSMTTELC--ELTCVGSTYFATQYRRECWCGSADADYALHGESTG-CTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALG------CYADDPEDRIMDDLVLSDSSMTTELCELTCE--GSTYFATQYGRECWCGSAGADYALHGEST-DCTYACSGDTDQTCGGFDAANVYRYPDDSTPSPTPSP 405
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.070e-11 Identity = 79/181 (43.65%), Postives = 92/181 (50.83%), Query Frame = 3 Query: 48 TCVDN-VSGIRSSDGSGDVCCNAKCPACGGEGCS-YPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXT-----------CSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTGGE------DNCCVGKIYDNGGLCTTEGAAPCIIYDDTDEEE 533 TC + V GI SS+ CC+ +C ACGG GCS + + L A +CC + I G C T PC I S + XXXXXXXXXXXXXXXXX S G GIESS CC V CG CGG GCS GE CC +I D+G C+ G APC + D D E Sbjct: 393 TCASHGVVGIESSNQK--ACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVREGESCAATGMAPCYIDSDDESXXXXXXXXXXXXXXXXXXXXXXXXGEGTAMCASYGVVGIESSNQKACCDVRCGACGGVGCSKF--GEAYGLDASYCCSNEIVDDGESCSATGMAPCFMESDDDSIE 569 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9768.23870.1 >prot_P-canaliculata_contig9768.23870.1 ID=prot_P-canaliculata_contig9768.23870.1|Name=mRNA_P-canaliculata_contig9768.23870.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=289bp MSYYAGYVVGTSYIGCFEETGSDPFSYRVEITGMTPELCYAECTTKDALYback to top mRNA from alignment at P-canaliculata_contig9768:1058..7415+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9768.23870.1 ID=mRNA_P-canaliculata_contig9768.23870.1|Name=mRNA_P-canaliculata_contig9768.23870.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6358bp|location=Sequence derived from alignment at P-canaliculata_contig9768:1058..7415+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9768:1058..7415+ >mRNA_P-canaliculata_contig9768.23870.1 ID=mRNA_P-canaliculata_contig9768.23870.1|Name=mRNA_P-canaliculata_contig9768.23870.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at P-canaliculata_contig9768:1058..7415+ (Pelvetia canaliculata dioecious)back to top |