mRNA_P-canaliculata_contig97441.23828.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97441.23828.1
Unique NamemRNA_P-canaliculata_contig97441.23828.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97441.23828.1 vs. uniprot
Match: UPI001EE8A38A (hypothetical protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE8A38A)

HSP 1 Score: 147 bits (371), Expect = 1.440e-39
Identity = 79/206 (38.35%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:    1 YCGWMVQQEAYWQDLEAVSGLFSDRETGELLPQQVFTPPKGAELVEEPDSSTLVFQAFCEKWRLQGMATLDLPVVIEPQLTPDTIYSPNSYPGSVTPFLPDIFPVDAKGPKALALENARMGIEAPHLEEWKSLISISSREKKRIDRYARQFNLQHYWRVLLQRYPKQLHRRKSVIEEAFGNYFSVTSRVISRDSQELAILIDRDLS 618
            Y GW+++Q  +W DL+ +    +     E +   VF+   G E +  P       ++ CEKWRLQ + + DLP+ + PQLT    YS  + PG++ PF+PDI+P++  G    ALE  R      HL EW  +I+ +SR K+ +   ARQF LQH+ RVL  RYP+QL R++ ++ E F   FSV+   I RD  EL+ ++ R LS
Sbjct:  127 YLGWLIRQREFWTDLDHLREAKASSSGYERV-TPVFSRVSGGEAMSAPPPRIGRERSLCEKWRLQRLESFDLPLPLAPQLTAANPYS-RTPPGAIAPFIPDIYPIEGSGETPQALEEIRRSSIQSHLREWSEIIATNSRLKREVKTLARQFQLQHFLRVLKNRYPEQLRRKQDLLNEIFAVEFSVSKATIQRDVSELSFVLKRPLS 330
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BLAST of mRNA_P-canaliculata_contig97441.23828.1 vs. uniprot
Match: A0A3D4P711_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D4P711_9PLAN)

HSP 1 Score: 92.4 bits (228), Expect = 9.680e-19
Identity = 59/195 (30.26%), Postives = 90/195 (46.15%), Query Frame = 1 
Query:    1 YCGWMVQQEAYWQDLEAVSGLFSDRETGELLPQQVFTPPKGAELVEEPDSSTLVFQAFCEKWRLQGMATLDLPVVIEPQLTPDTIYSPNSYPGSVTPF-LPDIFPVDAKGPKALALENARMGIEAP-HLEEWKSLISISSREKKRIDRYARQFNLQHYWRVLLQRYPKQLHRRKSVIEEAFGNYFSVTSRVISRD 579
            Y GW++ Q  +  + + +     ++      P+ V +      +  +  +    F+ F ++WRLQ +A   LP+ + P+      YS   +      F LPDI+P    G     +E        P HL+EW  +I  ++  K  I  Y RQF LQHYWRVL QRY K+LHR+K  +  AF     V+   I  D
Sbjct:  118 YLGWLLTQPTFLNEHDELLERHREKINRHGFPKPVHSSSPEKFVWRDDVNWLTEFREFFDRWRLQTLAAPYLPIPVAPRFPELRSYSRLPFGHGQNSFTLPDIYPSQGSGVIIEMMEETLRPRNPPEHLQEWMQIIGKTNTAKNAIPAYGRQFQLQHYWRVLQQRYSKELHRKKGALISAFAEILHVSDDTIKAD 312
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BLAST of mRNA_P-canaliculata_contig97441.23828.1 vs. uniprot
Match: A0A847GT50_9BACT (Uncharacterized protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GT50_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 2.810e-14
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:  163 FQAFCEKWRLQGMATLDLPVVIEPQLTP----DTIYSPNSYPGSVTPFLPDIFPVDAKGPKALALENARMGIEAP-HLEEWKSLISISSREKKRIDRYARQFNLQHYWRVLLQRYPKQLHRRKSVIEEAFGNYFSVTSRVISRD 579
            F  F  +WRL G+A   LP+ ++P +        +   N+  G+    LPD FPV ++      L++A  G   P HL EW  LIS  +  K+ + ++AR F +QHYWR+L  R+P  + R+  +++EA  ++  VT   + RD
Sbjct:  201 FNEFFTRWRLLGLAAPYLPIPLQPLMAGCVPLSAVSQLNNSGGAFC--LPDTFPVPSRDTLRNLLDDALHGTAPPDHLTEWMKLISRENSAKRSLLKFARVFEVQHYWRILHHRHPIAIRRKLRLLKEAISSFLEVTWDTVHRD 342
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97441.23828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001EE8A38A1.440e-3938.35hypothetical protein n=1 Tax=Rubinisphaera sp. ICM... [more]
A0A3D4P711_9PLAN9.680e-1930.26Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A847GT50_9BACT2.810e-1433.33Uncharacterized protein n=1 Tax=Candidatus Anammox... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97441contigP-canaliculata_contig97441:257..886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size618
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.7243779-CDS-P-canaliculata_contig97441:256..8741622817337.7243779-CDS-P-canaliculata_contig97441:256..874Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97441 257..874 -
1693495232.107869-CDS-P-canaliculata_contig97441:256..8741693495232.107869-CDS-P-canaliculata_contig97441:256..874Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97441 257..874 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.7364829-UTR-P-canaliculata_contig97441:874..8861622817337.7364829-UTR-P-canaliculata_contig97441:874..886Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97441 875..886 -
1693495232.1273713-UTR-P-canaliculata_contig97441:874..8861693495232.1273713-UTR-P-canaliculata_contig97441:874..886Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97441 875..886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97441.23828.1prot_P-canaliculata_contig97441.23828.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97441 257..874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97441.23828.1

>prot_P-canaliculata_contig97441.23828.1 ID=prot_P-canaliculata_contig97441.23828.1|Name=mRNA_P-canaliculata_contig97441.23828.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=206bp
MVQQEAYWQDLEAVSGLFSDRETGELLPQQVFTPPKGAELVEEPDSSTLV
FQAFCEKWRLQGMATLDLPVVIEPQLTPDTIYSPNSYPGSVTPFLPDIFP
VDAKGPKALALENARMGIEAPHLEEWKSLISISSREKKRIDRYARQFNLQ
HYWRVLLQRYPKQLHRRKSVIEEAFGNYFSVTSRVISRDSQELAILIDRD
LSTFL*
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mRNA from alignment at P-canaliculata_contig97441:257..886-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97441.23828.1 ID=mRNA_P-canaliculata_contig97441.23828.1|Name=mRNA_P-canaliculata_contig97441.23828.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at P-canaliculata_contig97441:257..886- (Pelvetia canaliculata dioecious)
TACTGCGGTTGGATGGTCCAGCAGGAAGCGTATTGGCAGGATCTTGAAGC
CGTCAGCGGCTTGTTTAGCGACCGTGAAACAGGTGAATTACTCCCTCAGC
AAGTCTTTACGCCGCCCAAAGGGGCAGAATTGGTTGAAGAGCCTGATTCT
TCTACACTCGTTTTTCAAGCGTTTTGTGAAAAGTGGCGGTTGCAAGGTAT
GGCAACTCTTGATTTACCCGTAGTTATTGAACCCCAGCTTACTCCGGACA
CTATTTACTCGCCAAATTCATACCCGGGGAGCGTTACGCCCTTTCTACCC
GACATATTTCCGGTAGACGCGAAAGGGCCAAAGGCGTTGGCGTTGGAAAA
TGCTCGCATGGGTATCGAAGCTCCTCACTTGGAAGAATGGAAATCACTGA
TTTCAATCTCGTCTCGGGAAAAGAAGCGAATAGATCGCTACGCTCGACAG
TTTAACCTGCAGCATTACTGGCGTGTGCTGTTGCAGAGATATCCGAAGCA
GCTTCATAGGCGAAAGTCAGTCATCGAAGAAGCTTTTGGCAATTACTTCT
CCGTCACTTCACGCGTAATCAGTCGCGATTCCCAGGAATTAGCGATCTTG
ATTGATCGCGATCTGAGCACGTTTCTTTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig97441:257..886-

>mRNA_P-canaliculata_contig97441.23828.1 ID=mRNA_P-canaliculata_contig97441.23828.1|Name=mRNA_P-canaliculata_contig97441.23828.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at P-canaliculata_contig97441:257..886- (Pelvetia canaliculata dioecious)
ATGGTCCAGCAGGAAGCGTATTGGCAGGATCTTGAAGCCGTCAGCGGCTT
GTTTAGCGACCGTGAAACAGGTGAATTACTCCCTCAGCAAGTCTTTACGC
CGCCCAAAGGGGCAGAATTGGTTGAAGAGCCTGATTCTTCTACACTCGTT
TTTCAAGCGTTTTGTGAAAAGTGGCGGTTGCAAGGTATGGCAACTCTTGA
TTTACCCGTAGTTATTGAACCCCAGCTTACTCCGGACACTATTTACTCGC
CAAATTCATACCCGGGGAGCGTTACGCCCTTTCTACCCGACATATTTCCG
GTAGACGCGAAAGGGCCAAAGGCGTTGGCGTTGGAAAATGCTCGCATGGG
TATCGAAGCTCCTCACTTGGAAGAATGGAAATCACTGATTTCAATCTCGT
CTCGGGAAAAGAAGCGAATAGATCGCTACGCTCGACAGTTTAACCTGCAG
CATTACTGGCGTGTGCTGTTGCAGAGATATCCGAAGCAGCTTCATAGGCG
AAAGTCAGTCATCGAAGAAGCTTTTGGCAATTACTTCTCCGTCACTTCAC
GCGTAATCAGTCGCGATTCCCAGGAATTAGCGATCTTGATTGATCGCGAT
CTGAGCACGTTTCTTTAGATGGTCCAGCAGGAAGCGTATTGGCAGGATCT
TGAAGCCGTCAGCGGCTTGTTTAGCGACCGTGAAACAGGTGAATTACTCC
CTCAGCAAGTCTTTACGCCGCCCAAAGGGGCAGAATTGGTTGAAGAGCCT
GATTCTTCTACACTCGTTTTTCAAGCGTTTTGTGAAAAGTGGCGGTTGCA
AGGTATGGCAACTCTTGATTTACCCGTAGTTATTGAACCCCAGCTTACTC
CGGACACTATTTACTCGCCAAATTCATACCCGGGGAGCGTTACGCCCTTT
CTACCCGACATATTTCCGGTAGACGCGAAAGGGCCAAAGGCGTTGGCGTT
GGAAAATGCTCGCATGGGTATCGAAGCTCCTCACTTGGAAGAATGGAAAT
CACTGATTTCAATCTCGTCTCGGGAAAAGAAGCGAATAGATCGCTACGCT
CGACAGTTTAACCTGCAGCATTACTGGCGTGTGCTGTTGCAGAGATATCC
GAAGCAGCTTCATAGGCGAAAGTCAGTCATCGAAGAAGCTTTTGGCAATT
ACTTCTCCGTCACTTCACGCGTAATCAGTCGCGATTCCCAGGAATTAGCG
ATCTTGATTGATCGCGATCTGAGCACGTTTCTTTAG
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