mRNA_P-canaliculata_contig97265.23811.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: UPI001673398F (type II secretion system minor pseudopilin GspK n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001673398F) HSP 1 Score: 311 bits (797), Expect = 3.850e-103 Identity = 163/240 (67.92%), Postives = 196/240 (81.67%), Query Frame = 1 Query: 1 MSRSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTG---GIGVLPQ-INVNSLTGERLLVLASALSG 708 M+R S+ ++GTVLLTTLLIM VMAA+TVALM+DI+ +VKRTINV AYAQADWQA GAEDF+ AYLQNDF L P AKAVLL ++ P ILPTP G+ITL LKDAS CFNL+ VV +AG ++ A EF+ + QLLGL NQA +L+S L+DWQD DQQ +GGAEDGTYLR+NPPYRTADTA+R PEE+RA++GMDEDLWELF+PFVCTG G G Q IN+NSL ERL++LA+AL+G Sbjct: 1 MTRKSKSEQGTVLLTTLLIMAVMAALTVALMEDIRFAVKRTINVNAYAQADWQAGGAEDFIAAYLQNDFRELDPAAKAVLLQSRTPLILPTPEGAITLILKDASHCFNLSHVVTDAGEQNSVAAAEFSNVAQLLGLPPNQAIALASTLIDWQDKDQQMRSGGAEDGTYLRRNPPYRTADTAMRSPEEMRALNGMDEDLWELFKPFVCTGPTKGEGQQSQSININSLPPERLILLAAALAG 240
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: UPI0004184FE1 (type II secretion system minor pseudopilin GspK n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004184FE1) HSP 1 Score: 198 bits (503), Expect = 7.920e-59 Identity = 109/238 (45.80%), Postives = 153/238 (64.29%), Query Frame = 1 Query: 7 RSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPT--GSITLTLKDASQCFNLNAVVNEAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSGEE 714 R K+RGTVLLTTLLIM VMAA++VA+MDDI+ +VKRTINV YAQADW GAEDF +Y+ + + P K L K PQ P G + L ++D + CF L ++VN +G + R+F L LG +N A SL++AL DW D+D Q+S+ GAEDG YLR++PP+RTA+TAL ELR+++GM E+L++ RPF+C G ++N+++ +L++ L G E Sbjct: 2 RHQDKERGTVLLTTLLIMAVMAAVSVAIMDDIRFAVKRTINVGDYAQADWYVKGAEDFAESYISSQLGPMQPAVKNELF--KTPQTFTFPYDGGMMILDVRDGTDCFALGSLVNSSGAANVVGGRQFTNLLIALGWPDNDARSLTAALTDWIDSDSQRSSNGAEDGDYLRRDPPHRTANTALTSVMELRSLEGMTEELYQSIRPFLCARKSGETAKLNIDTAEPIDAFLLSTILGGPE 237
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: A0A420WE48_9PROT (Type II secretion system protein K (GspK) n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WE48_9PROT) HSP 1 Score: 178 bits (452), Expect = 7.530e-51 Identity = 102/236 (43.22%), Postives = 148/236 (62.71%), Query Frame = 1 Query: 10 SSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVN-EAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSGEE 714 ++ + G VLLTTLLIM +MAA+ VALMDD++L++KRT NV YAQADW GAED+V L + E + +L + P ILP G++ L ++D S CFNLN++ + E + A +F QL ++LG+ Q+T +S+ ++DW D+D Q GGAEDG YLR+ PP TA+T L ELRAI+G+ +++E RP+VC G + NV+S + +LA+ L G+E Sbjct: 13 TADSESGAVLLTTLLIMAIMAALAVALMDDVRLALKRTANVNDYAQADWYVRGAEDYVGDVLGASLLNIEAENRNQVLTSMNPLILPLEGGAMQLDIRDGSHCFNLNSLTSAENESVNTVAANQFIQLMEILGIPPIQSTVISARVIDWIDSDNQTQPGGAEDGDYLRRTPPILTANTGLASVMELRAIEGITAEIYETLRPWVCIGPPHEISPFNVDSAQPWQAPLLATYLGGQE 248
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: A0A848V7B9_9PROT (Type II secretion system protein K n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V7B9_9PROT) HSP 1 Score: 173 bits (438), Expect = 4.930e-49 Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1 Query: 1 MSRSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDAAWRE--------FAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSGEE 714 M+R S KD+G +LLTTLLIM++M+A+ VA+MDD+++++ R+ N+Q +AQ DW E F +Y++ +F L+PE + L + LP G +TL + D +QC L+A+ + D E F +L + G+ E A +L++A+VDWQD DQQ S GGAED +YL NP YRT +T ELRA+ GM E+L + PF+C G QIN+N+L G + LVL S L G++ Sbjct: 1 MTRQSDKDKGAILLTTLLIMSMMSALAVAMMDDVRVAILRSKNIQTHAQTDWYVQAGESFAESYVEKNFLNLSPEQQNAALARPLFAELPIEGGLMTLVISDGTQCLPLSAL--QPPPSDGRGQEERPTTFTDAFQRLLEETGMGEIDAANLTAAIVDWQDGDQQISNGGAEDYSYLGLNPAYRTPNTFFSAVSELRAVQGMSEELLNMIAPFICAGDPERGGQININTL-GPQHLVLLSVLLGDD 243
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: UPI0003A3BA75 (type II secretion system minor pseudopilin GspK n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003A3BA75) HSP 1 Score: 170 bits (431), Expect = 4.240e-48 Identity = 95/231 (41.13%), Postives = 138/231 (59.74%), Query Frame = 1 Query: 22 DRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSGEE 714 +RG VLLTT+L+M +MA++ VA+ DD++ +V+R N+Q AQ D ADGAEDF YL +P L A P I P G +TL+++D SQC +L + G R+ F QL +++G+ +QA ++SA+ DWQD D GGAEDG YL +PPYRTA+T + P+ELRA+ G D L RP++C +IN+N+LT + + +LA+ L G + Sbjct: 9 ERGAVLLTTILVMVIMASVAVAIFDDLRYAVRRANNIQTAAQLDLYADGAEDFAAQYLAQVMGTASPAQMNAGLNAPEPIIFPLDNGVMTLSVRDGSQCLSLTQMNRGNGRRN------FRQLLEVMGVPTSQAAQMTSAVADWQDPDSAPLPGGAEDGYYLALDPPYRTANTPMSSPQELRAVRGFDAALVSRLRPYICARPDPAQSRINLNTLTADYVPLLAAYLGGTD 233
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: UPI000E6AC47C (type II secretion system minor pseudopilin GspK n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AC47C) HSP 1 Score: 152 bits (384), Expect = 3.520e-41 Identity = 97/237 (40.93%), Postives = 135/237 (56.96%), Query Frame = 1 Query: 16 QKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDA----AWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSGEE 714 +K+ G VLLT LL++ VMAA+ VA+M++I+LSVKRT N + AQA W A GAE F + A E LG P +LP G + T++DA+ CFNLN++ AG + A +F L + LGL + L+ AL DW D D + + GAED Y R +PP+RTA+ L G ELRA+ G + + + L RPFVC +N+NSLT E + +L L+G+E Sbjct: 4 RKESGAVLLTVLLMVAVMAAVAVAMMEEIRLSVKRTANAEISAQAQWYALGAETFAAKLVARAEKLGAGEQVRARLGQ--PMVLPVDGGRMVATIRDATNCFNLNSLAQPAGADESQGRARAQEQFRNLLRALGLFDGDQDRLAGALTDWVDEDSRPESPGAEDQHYTRLDPPFRTANALLTGVGELRAVAGFELETYRLLRPFVCARPDMEQTVLNLNSLTPEDVPLLIM-LAGKE 237
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: A0A8J3G1R6_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G1R6_9PROT) HSP 1 Score: 150 bits (379), Expect = 3.760e-40 Identity = 93/243 (38.27%), Postives = 141/243 (58.02%), Query Frame = 1 Query: 4 SRSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYL--------RKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSG 708 SR+ + GTVLL+TLL++++M+A+ +AL+ ++ SV RT + A +QAD A GA DF + + A + A L + P +LP GSITL + D + CF L+A+ + AG+ D A + F L + +G+ +++A+S+++A VDW D D Q GGAEDGTYL R P+RTA+ ++ ELRAI+ MDE L+ P VC G G + N+++ VLA+ L G Sbjct: 3 SRARSDEDGTVLLSTLLVLSLMSAVALALLATVRTSVVRTSALNARSQADLYAQGARDFAQSQIDL-VAGVEGAALNAQLRSGDPIVLPFDNGSITLAVSDGTHCFRLSALSSGAGLGSDTAQQRFTSLMRAIGVDQSRASSIAAAAVDWVDTDSQTRAGGAEDGTYLSRQAAQTWRGGGPHRTANVPMQSVTELRAINDMDEALFRRLLPHVCIGTPGTQTRFNIDTAEARHAPVLATILGG 244
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: A0A2G2J4G9_9PROT (Type II secretion system protein K n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J4G9_9PROT) HSP 1 Score: 142 bits (357), Expect = 2.990e-37 Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 1 Query: 7 RSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLA 693 R + + G VLLTTLL+M +MAAIT+A++DDI+ S++RTI+VQ+ Q W G EDF +L+N + E + A P I P G + + ++DA C+N+N + N + A+ ++F+Q QLL A L++++ DW D D ++GGAE +Y P Y ADT + ELRA+ G+DE +++ PFVC G +INVN+L+ E+ +LA Sbjct: 2 RPVRNETGAVLLTTLLLMALMAAITIAIVDDIRFSIRRTISVQSAEQLAWFERGGEDFAKVWLENVHSETQAEL-GEFIRADNPVIFPIDQGVLNIRIQDAHNCYNVNQLANPKTKK--ASRQQFSQFLQLLEFDITDADILAASIQDWVDTDTIPNSGGAEGLSYANLIPAYHAADTLMVDISELRAVQGIDESIYQRLLPFVCAGTNTKQNRINVNTLSLEQAPLLA 227
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: A0A7Y1SM71_9PROT (Type II secretion system protein K n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A7Y1SM71_9PROT) HSP 1 Score: 142 bits (357), Expect = 3.270e-37 Identity = 90/235 (38.30%), Postives = 133/235 (56.60%), Query Frame = 1 Query: 1 MSRSSQK--DRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVN-EAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLAS 696 MSR S +RG VL+TTLL+M+VMA ITV +MDDI+ S+KR + Q Q W + G ED+ +L + + + ++L + P I P G + + +D CFNLNA+ + E G D A ++ A+L L L + +A +++ + DW DAD GGAED TY R P YR A+T L ELR I+G+DE++++ RP+VC IN+N+ T E V+ + Sbjct: 1 MSRPSDNTSERGAVLITTLLLMSVMAVITVTIMDDIRFSIKRAASTQTAEQLAWYSRGGEDYARNWLGTQIDSDQKQLRKIIL-LQEPAIFPIEQGELQIRARDGRNCFNLNALAHPETG---DEARQKLARLLTFLELGDAEAEMIAAGVRDWVDADSVPLQGGAEDFTYSRLEPAYRAANTPLADISELREINGIDEEIYQSIRPYVCVMRDTEQNLININTATLEDAAVIGA 231
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Match: A0A2G2GIE2_9PROT (Type II secretion system protein K n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GIE2_9PROT) HSP 1 Score: 136 bits (342), Expect = 5.470e-35 Identity = 83/236 (35.17%), Postives = 130/236 (55.08%), Query Frame = 1 Query: 7 RSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQADWQADGAEDFVTAYLQNDFAALAPEAKAVLLGAKVPQILPTPTGSITLTLKDASQCFNLNAVVNEAGVRDDAAWREFAQLGQLLGLAENQATSLSSALVDWQDADQQQSTGGAEDGTYLRKNPPYRTADTALRGPEELRAIDGMDEDLWELFRPFVCTGGIGVLPQINVNSLTGERLLVLASALSGEE 714 + + +RG VLLTTLL++ V+AAITVA++DDI+ S++RT +VQ+ Q W GAE F +A+L++ E + A P I P G + L+D C+N+N + + A ++FA LL + A S+ +++ DW DAD ++GGAE +Y P Y A+T + ELR + G+DE ++ PFVC ++N+N+LT E+ +LA L G + Sbjct: 7 KHDENERGAVLLTTLLLLAVIAAITVAIVDDIRFSIRRTASVQSAEQLSWYQRGAESFGSAWLESQITDTQTELSQ-FINAGEPVIFPIDQGMLAFELQDGGNCYNVNVLA--VTKNKNIALKKFASFLNLLEIDSLDAHSIGASIQDWVDADGIPTSGGAEGMSYANLKPAYHAANTLMVDISELREVQGIDEITYQNLLPFVCARPTLKQSRVNLNTLTLEQAPLLAITLGGRD 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97265.23811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig97265.23811.1 >prot_P-canaliculata_contig97265.23811.1 ID=prot_P-canaliculata_contig97265.23811.1|Name=mRNA_P-canaliculata_contig97265.23811.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=238bp MSRSSQKDRGTVLLTTLLIMTVMAAITVALMDDIQLSVKRTINVQAYAQAback to top mRNA from alignment at P-canaliculata_contig97265:1..714- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig97265.23811.1 ID=mRNA_P-canaliculata_contig97265.23811.1|Name=mRNA_P-canaliculata_contig97265.23811.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=714bp|location=Sequence derived from alignment at P-canaliculata_contig97265:1..714- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig97265:1..714- >mRNA_P-canaliculata_contig97265.23811.1 ID=mRNA_P-canaliculata_contig97265.23811.1|Name=mRNA_P-canaliculata_contig97265.23811.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at P-canaliculata_contig97265:1..714- (Pelvetia canaliculata dioecious)back to top |