mRNA_P-canaliculata_contig97209.23806.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97209.23806.1
Unique NamemRNA_P-canaliculata_contig97209.23806.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97209.23806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97209contigP-canaliculata_contig97209:21..588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size547
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97209.23806.1prot_P-canaliculata_contig97209.23806.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97209 112..417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.2727697-UTR-P-canaliculata_contig97209:20..1111622817336.2727697-UTR-P-canaliculata_contig97209:20..111Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97209 21..111 +
1693495231.1343858-UTR-P-canaliculata_contig97209:20..1111693495231.1343858-UTR-P-canaliculata_contig97209:20..111Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97209 21..111 +
1622817336.3093524-UTR-P-canaliculata_contig97209:417..5881622817336.3093524-UTR-P-canaliculata_contig97209:417..588Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97209 418..588 +
1693495231.1650093-UTR-P-canaliculata_contig97209:417..5881693495231.1650093-UTR-P-canaliculata_contig97209:417..588Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97209 418..588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.2843683-CDS-P-canaliculata_contig97209:111..2971622817336.2843683-CDS-P-canaliculata_contig97209:111..297Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97209 112..297 +
1693495231.1438577-CDS-P-canaliculata_contig97209:111..2971693495231.1438577-CDS-P-canaliculata_contig97209:111..297Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97209 112..297 +
1622817336.296313-CDS-P-canaliculata_contig97209:318..4171622817336.296313-CDS-P-canaliculata_contig97209:318..417Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97209 319..417 +
1693495231.1543357-CDS-P-canaliculata_contig97209:318..4171693495231.1543357-CDS-P-canaliculata_contig97209:318..417Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97209 319..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97209.23806.1

>prot_P-canaliculata_contig97209.23806.1 ID=prot_P-canaliculata_contig97209.23806.1|Name=mRNA_P-canaliculata_contig97209.23806.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=95bp
MDQLMCASIFPNTQLHFWYEVGMLKASEYWLHRLQHFKRDSCVFQIWTHL
DLLSISQTRGKNFSVLVANIQVYANPKNCLKRWQGKGIYCSVCM*
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mRNA from alignment at P-canaliculata_contig97209:21..588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97209.23806.1 ID=mRNA_P-canaliculata_contig97209.23806.1|Name=mRNA_P-canaliculata_contig97209.23806.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=568bp|location=Sequence derived from alignment at P-canaliculata_contig97209:21..588+ (Pelvetia canaliculata dioecious)
GGCAACTTTACCCGGTTGATCCATACTCTTGCTATATGTGGACCATACAA
GGTAGTTCTAGTAACGGGTGCTGCAGCTTTTGCAGGCCACCATGGACCAA
TTAATGTGCGCCTCTATTTTCCCTAACACACAACTGCACTTTTGGTATGA
AGTGGGCATGTTGAAAGCATCGGAGTACTGGCTTCATAGGCTCCAGCACT
TCAAACGAGACTCTTGTGTATTTCAAATCTGGACGCACCTAGATCTTCTG
AGCATATCCCAGACAAGGGGAAAAAATGTCGAAAAGTTGTTTTTCATCTT
CAGTGTATTGGTTGCCAACATTCAAGTGTACGCCAACCCCAAGAACTGCC
TCAAACGGTGGCAAGGGAAGGGCATCTACTGTAGTGTATGTATGTAAATG
GTCATAGTATATACAGTAGCATAAGGGCAAGGATCAACAGGGTAAGATTG
CCAATCCTGCTCGTGGTCAGCTGAATATGTCCCTGTTCGCGCCTGAGAAT
TTGGTCTCGCGAGACGGGTTCGTCAGCCTGCTCATCTCTACACTCAAGCT
CAATCTGGTTACAGTAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig97209:21..588+

>mRNA_P-canaliculata_contig97209.23806.1 ID=mRNA_P-canaliculata_contig97209.23806.1|Name=mRNA_P-canaliculata_contig97209.23806.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at P-canaliculata_contig97209:21..588+ (Pelvetia canaliculata dioecious)
ATGGACCAATTAATGTGCGCCTCTATTTTCCCTAACACACAACTGCACTT
TTGGTATGAAGTGGGCATGTTGAAAGCATCGGAGTACTGGCTTCATAGGC
TCCAGCACTTCAAACGAGACTCTTGTGTATTTCAAATCTGGACGCACCTA
GATCTTCTGAGCATATCCCAGACAAGGGGAAAAAATATGGACCAATTAAT
GTGCGCCTCTATTTTCCCTAACACACAACTGCACTTTTGGTATGAAGTGG
GCATGTTGAAAGCATCGGAGTACTGGCTTCATAGGCTCCAGCACTTCAAA
CGAGACTCTTGTGTATTTCAAATCTGGACGCACCTAGATCTTCTGAGCAT
ATCCCAGACAAGGGGAAAAAATTTCAGTGTATTGGTTGCCAACATTCAAG
TGTACGCCAACCCCAAGAACTGCCTCAAACGGTGGCAAGGGAAGGGCATC
TACTGTAGTGTATGTATGTAATTCAGTGTATTGGTTGCCAACATTCAAGT
GTACGCCAACCCCAAGAACTGCCTCAAACGGTGGCAAGGGAAGGGCATCT
ACTGTAGTGTATGTATGTAA
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