mRNA_P-canaliculata_contig97188.23803.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97188.23803.1
Unique NamemRNA_P-canaliculata_contig97188.23803.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97188.23803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97188contigP-canaliculata_contig97188:136..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size876
Cds size876
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.0433488-CDS-P-canaliculata_contig97188:135..10111622817336.0433488-CDS-P-canaliculata_contig97188:135..1011Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97188 136..1011 +
1693495230.997352-CDS-P-canaliculata_contig97188:135..10111693495230.997352-CDS-P-canaliculata_contig97188:135..1011Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97188 136..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97188.23803.1prot_P-canaliculata_contig97188.23803.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97188 136..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97188.23803.1

>prot_P-canaliculata_contig97188.23803.1 ID=prot_P-canaliculata_contig97188.23803.1|Name=mRNA_P-canaliculata_contig97188.23803.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp
AALDAELANTLPLAASAAEERSNSAVRFDILSAKKLQRIQTLTAPDGEAL
ISLRIRITNVHEKGLVSKDALAGKQDAGRGVVSPFGGEAKVSESVELDFT
ALIKSLAQHFYLMANGIAYPLKAEMSMLDDAHSPYSKIELERQGQSQDVT
LLFSVPAGDEDFALQYLDYNLGHIVAPVSGDPSNAVGSSGALDCAVASLQ
HPLVDLCIDSIDELTQFEGYQAKQGNRLLGIKLSAISRAKSGNEGAILKI
DPSQYLWLQDSKDHFASSRALEKGDMQFPPDIRSTQIVVFEV
back to top

mRNA from alignment at P-canaliculata_contig97188:136..1011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97188.23803.1 ID=mRNA_P-canaliculata_contig97188.23803.1|Name=mRNA_P-canaliculata_contig97188.23803.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at P-canaliculata_contig97188:136..1011+ (Pelvetia canaliculata dioecious)
GCAGCGCTTGACGCTGAACTGGCAAATACCCTCCCTTTAGCCGCGTCAGC
AGCAGAAGAGCGTAGTAACAGCGCAGTACGCTTTGATATTCTCAGTGCAA
AAAAATTGCAGCGTATCCAAACACTAACTGCCCCGGATGGTGAAGCCTTA
ATAAGCTTACGTATCAGAATTACCAATGTACACGAGAAGGGGCTGGTATC
GAAAGACGCGCTGGCGGGAAAGCAGGATGCCGGGCGCGGGGTAGTCAGCC
CGTTTGGCGGTGAGGCGAAAGTGAGTGAAAGTGTCGAACTTGATTTCACT
GCACTCATAAAAAGCCTTGCGCAGCATTTTTATCTGATGGCAAATGGCAT
TGCGTATCCGCTGAAGGCTGAGATGTCGATGTTGGATGACGCACATTCGC
CCTATTCAAAAATTGAGCTTGAACGACAGGGCCAGTCACAGGATGTGACT
TTGTTGTTCTCTGTGCCTGCCGGAGACGAGGATTTTGCACTTCAATATCT
TGACTACAATCTGGGTCACATCGTTGCACCAGTGTCAGGAGATCCCTCAA
ATGCAGTGGGCAGCAGCGGAGCGCTCGATTGCGCTGTAGCCTCCTTGCAG
CATCCACTTGTCGATCTTTGCATTGATTCGATTGATGAACTCACACAGTT
CGAAGGTTACCAGGCAAAACAGGGCAATCGGCTACTGGGCATTAAGCTAT
CCGCTATCAGTCGTGCTAAAAGTGGCAACGAAGGCGCAATTCTAAAAATA
GATCCAAGTCAGTACCTTTGGCTTCAAGATAGCAAAGACCATTTTGCAAG
TAGTCGTGCTTTGGAAAAGGGAGATATGCAGTTCCCTCCTGATATTCGCA
GTACACAGATAGTGGTGTTTGAAGTA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig97188:136..1011+

>mRNA_P-canaliculata_contig97188.23803.1 ID=mRNA_P-canaliculata_contig97188.23803.1|Name=mRNA_P-canaliculata_contig97188.23803.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at P-canaliculata_contig97188:136..1011+ (Pelvetia canaliculata dioecious)
GCAGCGCTTGACGCTGAACTGGCAAATACCCTCCCTTTAGCCGCGTCAGC
AGCAGAAGAGCGTAGTAACAGCGCAGTACGCTTTGATATTCTCAGTGCAA
AAAAATTGCAGCGTATCCAAACACTAACTGCCCCGGATGGTGAAGCCTTA
ATAAGCTTACGTATCAGAATTACCAATGTACACGAGAAGGGGCTGGTATC
GAAAGACGCGCTGGCGGGAAAGCAGGATGCCGGGCGCGGGGTAGTCAGCC
CGTTTGGCGGTGAGGCGAAAGTGAGTGAAAGTGTCGAACTTGATTTCACT
GCACTCATAAAAAGCCTTGCGCAGCATTTTTATCTGATGGCAAATGGCAT
TGCGTATCCGCTGAAGGCTGAGATGTCGATGTTGGATGACGCACATTCGC
CCTATTCAAAAATTGAGCTTGAACGACAGGGCCAGTCACAGGATGTGACT
TTGTTGTTCTCTGTGCCTGCCGGAGACGAGGATTTTGCACTTCAATATCT
TGACTACAATCTGGGTCACATCGTTGCACCAGTGTCAGGAGATCCCTCAA
ATGCAGTGGGCAGCAGCGGAGCGCTCGATTGCGCTGTAGCCTCCTTGCAG
CATCCACTTGTCGATCTTTGCATTGATTCGATTGATGAACTCACACAGTT
CGAAGGTTACCAGGCAAAACAGGGCAATCGGCTACTGGGCATTAAGCTAT
CCGCTATCAGTCGTGCTAAAAGTGGCAACGAAGGCGCAATTCTAAAAATA
GATCCAAGTCAGTACCTTTGGCTTCAAGATAGCAAAGACCATTTTGCAAG
TAGTCGTGCTTTGGAAAAGGGAGATATGCAGTTCCCTCCTGATATTCGCA
GTACACAGATAGTGGTGTTTGAAGTAGCAGCGCTTGACGCTGAACTGGCA
AATACCCTCCCTTTAGCCGCGTCAGCAGCAGAAGAGCGTAGTAACAGCGC
AGTACGCTTTGATATTCTCAGTGCAAAAAAATTGCAGCGTATCCAAACAC
TAACTGCCCCGGATGGTGAAGCCTTAATAAGCTTACGTATCAGAATTACC
AATGTACACGAGAAGGGGCTGGTATCGAAAGACGCGCTGGCGGGAAAGCA
GGATGCCGGGCGCGGGGTAGTCAGCCCGTTTGGCGGTGAGGCGAAAGTGA
GTGAAAGTGTCGAACTTGATTTCACTGCACTCATAAAAAGCCTTGCGCAG
CATTTTTATCTGATGGCAAATGGCATTGCGTATCCGCTGAAGGCTGAGAT
GTCGATGTTGGATGACGCACATTCGCCCTATTCAAAAATTGAGCTTGAAC
GACAGGGCCAGTCACAGGATGTGACTTTGTTGTTCTCTGTGCCTGCCGGA
GACGAGGATTTTGCACTTCAATATCTTGACTACAATCTGGGTCACATCGT
TGCACCAGTGTCAGGAGATCCCTCAAATGCAGTGGGCAGCAGCGGAGCGC
TCGATTGCGCTGTAGCCTCCTTGCAGCATCCACTTGTCGATCTTTGCATT
GATTCGATTGATGAACTCACACAGTTCGAAGGTTACCAGGCAAAACAGGG
CAATCGGCTACTGGGCATTAAGCTATCCGCTATCAGTCGTGCTAAAAGTG
GCAACGAAGGCGCAATTCTAAAAATAGATCCAAGTCAGTACCTTTGGCTT
CAAGATAGCAAAGACCATTTTGCAAGTAGTCGTGCTTTGGAAAAGGGAGA
TATGCAGTTCCCTCCTGATATTCGCAGTACACAGATAGTGGTGTTTGAAG
TA
back to top