mRNA_P-canaliculata_contig9716.23800.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9716.23800.1
Unique NamemRNA_P-canaliculata_contig9716.23800.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9716.23800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9716contigP-canaliculata_contig9716:11181..11804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size624
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9716.23800.1prot_P-canaliculata_contig9716.23800.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9716 11399..11713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.7290223-UTR-P-canaliculata_contig9716:11180..113981622817335.7290223-UTR-P-canaliculata_contig9716:11180..11398Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9716 11181..11398 +
1693495230.776746-UTR-P-canaliculata_contig9716:11180..113981693495230.776746-UTR-P-canaliculata_contig9716:11180..11398Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9716 11181..11398 +
1622817335.7522383-UTR-P-canaliculata_contig9716:11713..118041622817335.7522383-UTR-P-canaliculata_contig9716:11713..11804Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9716 11714..11804 +
1693495230.8067777-UTR-P-canaliculata_contig9716:11713..118041693495230.8067777-UTR-P-canaliculata_contig9716:11713..11804Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9716 11714..11804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.7408009-CDS-P-canaliculata_contig9716:11398..117131622817335.7408009-CDS-P-canaliculata_contig9716:11398..11713Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9716 11399..11713 +
1693495230.7881334-CDS-P-canaliculata_contig9716:11398..117131693495230.7881334-CDS-P-canaliculata_contig9716:11398..11713Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9716 11399..11713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9716.23800.1

>prot_P-canaliculata_contig9716.23800.1 ID=prot_P-canaliculata_contig9716.23800.1|Name=mRNA_P-canaliculata_contig9716.23800.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=105bp
MWQLMQEFAPPINNKNVRCIVMVLKNGAQKQCGALQRWIPNAGTKGLMNH
VERVHPGEFARLKLLSVRGDNRVIDRQQARRNQCREDTDKAQNERAGDLI
EIDL*
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mRNA from alignment at P-canaliculata_contig9716:11181..11804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9716.23800.1 ID=mRNA_P-canaliculata_contig9716.23800.1|Name=mRNA_P-canaliculata_contig9716.23800.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at P-canaliculata_contig9716:11181..11804+ (Pelvetia canaliculata dioecious)
ACCAAGAGCACACGACACACGACTGCACACGACATGGATCCACCCGCTGA
CGGTCTCCAGCAGTCACCTGTCGCTGCCGAGGCTTCAGTGGCGTCGCCGT
CGCCACCTGAGACGGGTGGCGCCACATCGGTGAATCAGTTTTTCGTCCAA
AATCGCGGACAACAACTGCGAAAGTCACGATTTACGATGCTCCTGTCGGC
AAGAAGAAGACTTTATGGATGTGGCAATTGATGCAGGAGTTCGCGCCACC
CATCAACAACAAAAACGTGCGGTGTATCGTGATGGTGCTCAAAAACGGGG
CACAGAAGCAGTGCGGGGCTTTACAGCGGTGGATCCCGAACGCTGGGACC
AAGGGGCTGATGAACCACGTGGAGCGGGTGCACCCTGGCGAATTTGCCAG
ACTGAAGCTGCTCAGTGTGCGGGGTGACAACAGGGTCATCGACAGGCAGC
AGGCGCGCCGAAACCAGTGCAGAGAGGACACTGACAAGGCGCAGAACGAA
AGAGCCGGCGATTTGATTGAGATCGACCTGTAGATGATGGTGACAGCGAG
GAATACTTTCGGTCGAAGCTCTTTGGACAGTTGGTAGAGCGGGTTGGCAA
TAGCGTATACCACACAGGACGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9716:11181..11804+

>mRNA_P-canaliculata_contig9716.23800.1 ID=mRNA_P-canaliculata_contig9716.23800.1|Name=mRNA_P-canaliculata_contig9716.23800.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at P-canaliculata_contig9716:11181..11804+ (Pelvetia canaliculata dioecious)
ATGTGGCAATTGATGCAGGAGTTCGCGCCACCCATCAACAACAAAAACGT
GCGGTGTATCGTGATGGTGCTCAAAAACGGGGCACAGAAGCAGTGCGGGG
CTTTACAGCGGTGGATCCCGAACGCTGGGACCAAGGGGCTGATGAACCAC
GTGGAGCGGGTGCACCCTGGCGAATTTGCCAGACTGAAGCTGCTCAGTGT
GCGGGGTGACAACAGGGTCATCGACAGGCAGCAGGCGCGCCGAAACCAGT
GCAGAGAGGACACTGACAAGGCGCAGAACGAAAGAGCCGGCGATTTGATT
GAGATCGACCTGTAGATGTGGCAATTGATGCAGGAGTTCGCGCCACCCAT
CAACAACAAAAACGTGCGGTGTATCGTGATGGTGCTCAAAAACGGGGCAC
AGAAGCAGTGCGGGGCTTTACAGCGGTGGATCCCGAACGCTGGGACCAAG
GGGCTGATGAACCACGTGGAGCGGGTGCACCCTGGCGAATTTGCCAGACT
GAAGCTGCTCAGTGTGCGGGGTGACAACAGGGTCATCGACAGGCAGCAGG
CGCGCCGAAACCAGTGCAGAGAGGACACTGACAAGGCGCAGAACGAAAGA
GCCGGCGATTTGATTGAGATCGACCTGTAG
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