mRNA_P-canaliculata_contig9715.23798.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU1_ECTSI) HSP 1 Score: 108 bits (271), Expect = 3.070e-24 Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = -2
Query: 7 IHGVVQVASWSTNVNDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLYEKN----GTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYSKYDIQPQQRASPFGELP 564
I+G + VASW D K Y+ N + +++E SG+ + GT+ WG +C GP + ++ PA+ LTN +G V I+EESS+YP+FLYSVW AE DS L ++FH+ S+ RL EA++T IVH E GG F LLR FSET +Y+ RASPFGE+P
Sbjct: 190 INGEILVASW-----DDKPSLFYDINGANV--------DSLECSGETLKDAEVYLGTDLWGNALDCERGP-RPTGLTTSPPAVVLTNGDSGLVSVIVEESSSYPTFLYSVWTAEGS--DSVELAYLFHVHSTVRLVEAVITGIVHG--------ETEGGACFGLLRVFSETRVEYE-DGLDRASPFGEIP 354
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 6.230e-21 Identity = 64/153 (41.83%), Postives = 84/153 (54.90%), Query Frame = -2
Query: 7 KSGDLYEK--NGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFS-------ETYSKYDIQPQQRASPFGELP 438
K +Y K N +E+WG V EC GP N + PA+ LT + T + H IIEE++T+ SFLYSVW+ DS L + FHI S+ RLAEA+VT IV E +GGG F +LR FS + Y+K ++ A PFGE P
Sbjct: 249 KDAPVYRKMNNKSEEWGRVVECEAGPRLANGGEQAQPAIILTQNGTNETHVIIEETTTFLSFLYSVWKTNG---DSVTLTYAFHIASTVRLAEAVVTGIVLG--------ESSGGGCFGMLRAFSRGPEPPEDEYAKMMVK----ALPFGENP 386
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: A0A6H5JPI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI8_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 8.200e-21 Identity = 65/189 (34.39%), Postives = 90/189 (47.62%), Query Frame = -2
Query: 7 IHGVVQVASWSTNVNDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLY-EKNGTEKWGEVQECSHGPGKKNR--DDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYSKYDIQPQQRASPFGELP 564
I G ASWS + + + Y D + G V+ +C ++G LY + KWG+V EC GP N +D +P + L N G+ + I+EE S+YPSFLYSVW L H F++ S+ RL EA+V+ GGG +L KFS + Y + R SPFGE P
Sbjct: 168 IRGNTVFASWSPQSSRIASGLFY-DIDNGQAIVSEIACSTPSRTGSLYITAEESSKWGDVSECESGPSLVNASANDRASPPVILLNSTEGEAYLIVEEESSYPSFLYSVWVPGEVKPQEAQLNHAFYVSSTTRLVEAIVSGXXXXXXX--------GGGCLDMLTKFSVQNATYSLNGALRVSPFGEHP 347
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU0_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 8.680e-21 Identity = 70/196 (35.71%), Postives = 97/196 (49.49%), Query Frame = -2
Query: 7 IHGVVQVASWSTNVNDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLYEKNGT---EKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKT-----DDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYS--KYDIQPQQRASPFGELP 564
I G + VASWS + Y + T + S + +N T E+WG V EC GPG N + P++ LT GD H I+EE+S +PSFLYSVW A + D S + + FHI S+ RLAEA+VT IV+ G GG F LLR +S+ +++ ++A+PFGE P
Sbjct: 186 IDGEIIVASWSPE--EKPDSLIYGQSATVMVDGITCSSNGTRDDTTVTRRNATDHIEEWGTVLECDRGPGITNGTGKSKPSIILTAHDGGDTHVIVEETSKHPSFLYSVWNATGDSITAAGDSSVEIAYAFHIASTVRLAEAVVTGIVNGVAGGG------GGACFGLLRAYSKGSDTPEFEEYGTEKATPFGEDP 373
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT9_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.530e-20 Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = -2
Query: 7 KNGT---EKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKT------DDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFS----ETYSKYDIQPQQRASPFGELP 417
KNGT E WG V EC GP + S+ P++ LT +TGD H I+EE+S+ PSFLYSVW A + + S + + FHI S+ RLAEA+VT IV+ G GG F LLR ++ +T D +Q+A PFGE P
Sbjct: 235 KNGTDAIEVWGTVLECDQGPAGIDVIGSSKPSIILTERETGDTHVIVEETSSEPSFLYSVWNATGASITAAAGNSSVEIAYAFHISSTVRLAEAVVTAIVNGVAGEG------GGACFGLLRAYNRGPYDTVDFSDSYGKQKAMPFGEDP 378
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: A0A6H5JST2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST2_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.570e-20 Identity = 70/199 (35.18%), Postives = 99/199 (49.75%), Query Frame = -2
Query: 7 IHGVVQVASWSTNV---------NDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLYEK--NGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYSKYDIQPQQ--RASPFGELP 564
I G + VA+W + ++ +R+ T + + S K +Y K N +E+WG V EC GP N + PA+ LT T + H IIEE++T+ SFLYSVW+ +S L + FHI S+ RLAEA+VT IV E TGGG F +LR FS + + + + +A PFGE P
Sbjct: 198 ISGDIIVANWDPAIAGSLNFFFGENILSRSYEEKTATAVVEAVDCSSSGRLKDAPVYRKINNKSEEWGRVVECEVGPRLPNGSEQAQPAIILTQHGTNETHVIIEETTTFLSFLYSVWKTNG---ESVNLSYAFHIASTVRLAEAVVTGIVLG--------ESTGGGCFGMLRAFSRGPNPPEDEYGEMIKALPFGENP 385
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: A0A6H5JMP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP8_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.590e-20 Identity = 76/206 (36.89%), Postives = 104/206 (50.49%), Query Frame = -2
Query: 7 IHGVVQVASWSTNVNDLKTRNS-YNDNETGITHVTNHSCEAVEKSGD---------LYEKNGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKT------DDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSE-TYSKYDIQP---QQRASPFGELP 564
I+G + VA+WS N K N Y +N T + V +C + K+ L NG E+WG V EC GP ++ P++ LT +TGD H I+EE+S+ PSFLYSVW A + + S + + FHI S+ RLAEA+VT IV+ G GG F LLR ++ Y D +Q+A PFGE P
Sbjct: 183 INGDIIVANWSRNT---KPDNLVYGENATVM--VDGITCSSGGKAQTFTDDPIPVTLNRTNGIEEWGTVLECDQGPAVVEVIGNSKPSIILTERETGDTHVIVEETSSEPSFLYSVWNATGASITAAAGNSSVEIAYAFHISSTVRLAEAVVTAIVNGVAGDG------GGACFGLLRAYNRGPYDTRDFSALYGKQKARPFGEDP 377
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D8LC87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC87_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 3.610e-15 Identity = 72/193 (37.31%), Postives = 96/193 (49.74%), Query Frame = -2
Query: 7 IHGVVQVASWSTNVNDLKTRNS--YNDNETGITHVTNHSCEAVEKSGDLYEKNGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFS-----ETYSKYDIQPQQRASPFGELP 564
+ G + VASW D K R Y N T V + +C+ GD+Y + WG C GP +N+ S+ P + L + G+V I+EE T+PSFLYSVW A + DS L + FHI S+ RLAEA+VT IV+ E GG F LLR F+ E + ++RA PFGE P
Sbjct: 183 VDGEIVVASWDP---DDKHRAGLYYGSNHTAT--VDSITCKGT--GGDVYLYDEAA-WGSFLWCGEGPLAENKT-SSQPVIILEKSE-GEVSVIVEEVGTHPSFLYSVWTAGSA--DSKELAYSFHISSTVRLAEAVVTGIVNG--------ETGGGPCFGLLRTFNAGRDMEEGISTGEEERERAKPFGEKP 355 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9715.23798.1 >prot_P-canaliculata_contig9715.23798.1 ID=prot_P-canaliculata_contig9715.23798.1|Name=mRNA_P-canaliculata_contig9715.23798.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=116bp MEDVSQEGRVVGLVFGPPDGVQEAWIGTAFFDDEVNVACFIIGELQRGRSback to top mRNA from alignment at P-canaliculata_contig9715:4137..4710+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9715.23798.1 ID=mRNA_P-canaliculata_contig9715.23798.1|Name=mRNA_P-canaliculata_contig9715.23798.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at P-canaliculata_contig9715:4137..4710+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9715:4137..4710+ >mRNA_P-canaliculata_contig9715.23798.1 ID=mRNA_P-canaliculata_contig9715.23798.1|Name=mRNA_P-canaliculata_contig9715.23798.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at P-canaliculata_contig9715:4137..4710+ (Pelvetia canaliculata dioecious)back to top |