mRNA_P-canaliculata_contig970.23774.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig970.23774.1
Unique NamemRNA_P-canaliculata_contig970.23774.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig970.23774.1 vs. uniprot
Match: A0A1V8S8D9_9PEZI (Uncharacterized protein n=1 Tax=Rachicladosporium antarcticum TaxID=1507870 RepID=A0A1V8S8D9_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-10
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:    1 DDEVRVEARLKEFFFELRLTDKETMRLLAREGITLDRRQIGRRRRALGLHKKILSAEEQERHREWVREKLVVEYTTGEPEDLGRMHLYAYMRSRYNVVGRY 303
            +D+  +  R+  F + ++ +DKE++ +LA +G  + +R++ R R A+GL ++   A   E     +RE L  E   G  +D G+MHLY YMRS+YN+ GR+
Sbjct:   17 EDDHELRRRILNFHYMVQCSDKESIAMLALDGFEVSQRRLQRMRLAMGLKQRSRGAYRAEMDTR-MREALDQEIEQGHIKDFGKMHLYQYMRSQYNIAGRF 116
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BLAST of mRNA_P-canaliculata_contig970.23774.1 vs. uniprot
Match: A0A1V8S7G5_9PEZI (Uncharacterized protein n=1 Tax=Rachicladosporium antarcticum TaxID=1507870 RepID=A0A1V8S7G5_9PEZI)

HSP 1 Score: 66.2 bits (160), Expect = 1.540e-10
Identity = 36/100 (36.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 DDEVRVEARLKEFFFELRLTDKETMRLLAREGITLDRRQIGRRRRALGLHKKILSAEEQERHREWVREKLVVEYTTGEPEDLGRMHLYAYMRSRYNVVGR 300
            D ++ +  R+K   +E++ +D E++ +L  +G  + +R++ R R ALGL +++  A+ +E+    + EKL  E   G+ EDLG+ HLY +MRS+YN++GR
Sbjct:   60 DADLALTKRIKYLHYEVQCSDDESVFMLTEDGWPISKRRLQRMRLALGLKQRVPGAD-REQMDALMAEKLAYEMEQGQIEDLGKHHLYRFMRSKYNIIGR 158
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BLAST of mRNA_P-canaliculata_contig970.23774.1 vs. uniprot
Match: A0A1V8UHA5_9PEZI (Uncharacterized protein n=1 Tax=Rachicladosporium sp. CCFEE 5018 TaxID=1974281 RepID=A0A1V8UHA5_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 1.880e-9
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 DDEVRVEARLKEFFFELRLTDKETMRLLAREGITLDRRQIGRRRRALGLHKKILSAEEQERHREWVREKLVVEYTTGEPEDLGRMHLYAYMRSRYNVVGR 300
            +D+  +  R+  F + ++ +DKE++ +LA +G  + +R++ R R A+GL ++   A   E     +RE L  E   G  ED G+MHLY YMRS+YN+ GR
Sbjct:   62 EDDHELRRRILNFHYMVQCSDKESIAMLALDGFEVSQRRLQRMRLAMGLKQRSRGACRAEMDTR-MREALDQEMEQGHIEDFGKMHLYQYMRSQYNIAGR 160
[Close]
BLAST of mRNA_P-canaliculata_contig970.23774.1 vs. uniprot
Match: A0A1V8TMD9_9PEZI (Uncharacterized protein n=1 Tax=Rachicladosporium sp. CCFEE 5018 TaxID=1974281 RepID=A0A1V8TMD9_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-9
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 DDEVRVEARLKEFFFELRLTDKETMRLLAREGITLDRRQIGRRRRALGLHKKILSAEEQERHREWVREKLVVEYTTGEPEDLGRMHLYAYMRSRYNVVGR 300
            +D+  +  R+  F + ++ +DKE++ +LA +G  + +R++ R R A+GL ++   A   E     +RE L  E   G  ED G+MHLY YMRS+YN+ GR
Sbjct:   62 EDDHELRRRILNFHYMVQCSDKESIAMLALDGFEVSQRRLQRMRLAMGLKQRSRGACRAEMDTR-MREALDQEMEQGHIEDFGKMHLYQYMRSQYNIAGR 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig970.23774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1V8S8D9_9PEZI1.070e-1035.64Uncharacterized protein n=1 Tax=Rachicladosporium ... [more]
A0A1V8S7G5_9PEZI1.540e-1036.00Uncharacterized protein n=1 Tax=Rachicladosporium ... [more]
A0A1V8UHA5_9PEZI1.880e-937.00Uncharacterized protein n=1 Tax=Rachicladosporium ... [more]
A0A1V8TMD9_9PEZI1.970e-937.00Uncharacterized protein n=1 Tax=Rachicladosporium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig970contigP-canaliculata_contig970:12273..12575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817332.7212534-CDS-P-canaliculata_contig970:12272..125751622817332.7212534-CDS-P-canaliculata_contig970:12272..12575Pelvetia canaliculata dioeciousCDSP-canaliculata_contig970 12273..12575 -
1693495229.557301-CDS-P-canaliculata_contig970:12272..125751693495229.557301-CDS-P-canaliculata_contig970:12272..12575Pelvetia canaliculata dioeciousCDSP-canaliculata_contig970 12273..12575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig970.23774.1prot_P-canaliculata_contig970.23774.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig970 12273..12575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig970.23774.1

>prot_P-canaliculata_contig970.23774.1 ID=prot_P-canaliculata_contig970.23774.1|Name=mRNA_P-canaliculata_contig970.23774.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=101bp
DDEVRVEARLKEFFFELRLTDKETMRLLAREGITLDRRQIGRRRRALGLH
KKILSAEEQERHREWVREKLVVEYTTGEPEDLGRMHLYAYMRSRYNVVGR
Y
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mRNA from alignment at P-canaliculata_contig970:12273..12575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig970.23774.1 ID=mRNA_P-canaliculata_contig970.23774.1|Name=mRNA_P-canaliculata_contig970.23774.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at P-canaliculata_contig970:12273..12575- (Pelvetia canaliculata dioecious)
GATGATGAGGTGAGGGTTGAAGCGAGGCTCAAGGAGTTCTTCTTTGAGCT
TCGGCTTACTGACAAGGAAACAATGCGGCTCCTCGCCCGGGAGGGCATCA
CACTGGACCGGAGACAGATTGGTCGGAGGCGGCGGGCCCTGGGGCTGCAC
AAGAAAATCTTGAGTGCGGAGGAGCAGGAGCGCCACCGTGAGTGGGTTCG
AGAGAAGCTCGTGGTAGAGTACACCACCGGGGAGCCAGAGGACCTGGGGC
GGATGCACTTGTACGCATATATGCGGAGCAGGTACAATGTCGTTGGGCGG
TAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig970:12273..12575-

>mRNA_P-canaliculata_contig970.23774.1 ID=mRNA_P-canaliculata_contig970.23774.1|Name=mRNA_P-canaliculata_contig970.23774.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig970:12273..12575- (Pelvetia canaliculata dioecious)
GATGATGAGGTGAGGGTTGAAGCGAGGCTCAAGGAGTTCTTCTTTGAGCT
TCGGCTTACTGACAAGGAAACAATGCGGCTCCTCGCCCGGGAGGGCATCA
CACTGGACCGGAGACAGATTGGTCGGAGGCGGCGGGCCCTGGGGCTGCAC
AAGAAAATCTTGAGTGCGGAGGAGCAGGAGCGCCACCGTGAGTGGGTTCG
AGAGAAGCTCGTGGTAGAGTACACCACCGGGGAGCCAGAGGACCTGGGGC
GGATGCACTTGTACGCATATATGCGGAGCAGGTACAATGTCGTTGGGCGG
TATGATGATGAGGTGAGGGTTGAAGCGAGGCTCAAGGAGTTCTTCTTTGA
GCTTCGGCTTACTGACAAGGAAACAATGCGGCTCCTCGCCCGGGAGGGCA
TCACACTGGACCGGAGACAGATTGGTCGGAGGCGGCGGGCCCTGGGGCTG
CACAAGAAAATCTTGAGTGCGGAGGAGCAGGAGCGCCACCGTGAGTGGGT
TCGAGAGAAGCTCGTGGTAGAGTACACCACCGGGGAGCCAGAGGACCTGG
GGCGGATGCACTTGTACGCATATATGCGGAGCAGGTACAATGTCGTTGGG
CGGTAT
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