mRNA_P-canaliculata_contig96786.23714.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig96786.23714.1
Unique NamemRNA_P-canaliculata_contig96786.23714.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96786.23714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96786contigP-canaliculata_contig96786:225..1046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817329.127862-CDS-P-canaliculata_contig96786:224..10461622817329.127862-CDS-P-canaliculata_contig96786:224..1046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96786 225..1046 -
1693495227.48825-CDS-P-canaliculata_contig96786:224..10461693495227.48825-CDS-P-canaliculata_contig96786:224..1046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96786 225..1046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96786.23714.1prot_P-canaliculata_contig96786.23714.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig96786 225..1046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig96786.23714.1

>prot_P-canaliculata_contig96786.23714.1 ID=prot_P-canaliculata_contig96786.23714.1|Name=mRNA_P-canaliculata_contig96786.23714.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=274bp
QTFAASSVQEIVFVGLGGNDVFTNNTSIPASAFGNDGNDRLNGGSGADFL
GGGAGDDDLRGNGGDDILYAGNDINSSDQLHGGDGDDSVLGGPGISRLFG
NDGNDLLIGGDKDDFASGGEGDDTIYPGAGDDTVITGNGDNVVAGFDGDD
TITGGTGMDILYGGKGEDTIDGGGGQDTIGGQDDNDTLAGGDGEDFIIGG
DGDDEISGGRGNDSLFGDHGDDVIFGGSGDDSIHGYFGNDRLFGGSGDDG
VYGDDGTDGLSGGSGSDVVGGGAG
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mRNA from alignment at P-canaliculata_contig96786:225..1046-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig96786.23714.1 ID=mRNA_P-canaliculata_contig96786.23714.1|Name=mRNA_P-canaliculata_contig96786.23714.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=822bp|location=Sequence derived from alignment at P-canaliculata_contig96786:225..1046- (Pelvetia canaliculata dioecious)
CAAACTTTTGCGGCGTCGTCGGTACAGGAAATCGTCTTTGTTGGACTCGG
CGGCAATGATGTCTTCACAAACAACACCAGCATCCCGGCTTCGGCGTTTG
GAAACGACGGCAACGATCGACTCAACGGTGGCTCAGGCGCTGATTTTCTT
GGCGGCGGAGCGGGAGATGACGACCTGCGGGGCAACGGCGGCGACGACAT
TTTATACGCCGGCAACGACATCAACTCGTCGGACCAATTGCATGGTGGCG
ACGGTGACGATAGCGTCCTTGGCGGCCCCGGTATCAGTAGATTATTCGGA
AATGACGGCAATGACCTACTGATCGGCGGGGACAAAGACGACTTCGCTTC
CGGTGGCGAAGGCGATGATACGATTTATCCAGGAGCAGGCGACGACACTG
TTATTACAGGTAATGGCGATAACGTCGTTGCGGGGTTTGATGGGGATGAC
ACCATCACCGGTGGCACCGGAATGGACATACTGTATGGGGGCAAGGGCGA
AGATACGATTGATGGTGGTGGAGGACAAGATACCATCGGTGGGCAAGACG
ATAACGACACCCTTGCTGGTGGTGACGGCGAAGACTTCATCATCGGCGGC
GATGGCGATGACGAAATTTCAGGTGGTCGCGGGAACGATTCGCTGTTTGG
AGACCACGGAGACGACGTTATTTTTGGTGGATCTGGTGACGACTCAATCC
ATGGCTACTTTGGCAACGACCGGCTATTTGGTGGCAGTGGTGACGACGGT
GTTTATGGTGACGACGGAACGGATGGTCTCTCTGGAGGTTCAGGCAGCGA
CGTCGTTGGCGGCGGTGCCGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig96786:225..1046-

>mRNA_P-canaliculata_contig96786.23714.1 ID=mRNA_P-canaliculata_contig96786.23714.1|Name=mRNA_P-canaliculata_contig96786.23714.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at P-canaliculata_contig96786:225..1046- (Pelvetia canaliculata dioecious)
CAAACTTTTGCGGCGTCGTCGGTACAGGAAATCGTCTTTGTTGGACTCGG
CGGCAATGATGTCTTCACAAACAACACCAGCATCCCGGCTTCGGCGTTTG
GAAACGACGGCAACGATCGACTCAACGGTGGCTCAGGCGCTGATTTTCTT
GGCGGCGGAGCGGGAGATGACGACCTGCGGGGCAACGGCGGCGACGACAT
TTTATACGCCGGCAACGACATCAACTCGTCGGACCAATTGCATGGTGGCG
ACGGTGACGATAGCGTCCTTGGCGGCCCCGGTATCAGTAGATTATTCGGA
AATGACGGCAATGACCTACTGATCGGCGGGGACAAAGACGACTTCGCTTC
CGGTGGCGAAGGCGATGATACGATTTATCCAGGAGCAGGCGACGACACTG
TTATTACAGGTAATGGCGATAACGTCGTTGCGGGGTTTGATGGGGATGAC
ACCATCACCGGTGGCACCGGAATGGACATACTGTATGGGGGCAAGGGCGA
AGATACGATTGATGGTGGTGGAGGACAAGATACCATCGGTGGGCAAGACG
ATAACGACACCCTTGCTGGTGGTGACGGCGAAGACTTCATCATCGGCGGC
GATGGCGATGACGAAATTTCAGGTGGTCGCGGGAACGATTCGCTGTTTGG
AGACCACGGAGACGACGTTATTTTTGGTGGATCTGGTGACGACTCAATCC
ATGGCTACTTTGGCAACGACCGGCTATTTGGTGGCAGTGGTGACGACGGT
GTTTATGGTGACGACGGAACGGATGGTCTCTCTGGAGGTTCAGGCAGCGA
CGTCGTTGGCGGCGGTGCCGGCCAAACTTTTGCGGCGTCGTCGGTACAGG
AAATCGTCTTTGTTGGACTCGGCGGCAATGATGTCTTCACAAACAACACC
AGCATCCCGGCTTCGGCGTTTGGAAACGACGGCAACGATCGACTCAACGG
TGGCTCAGGCGCTGATTTTCTTGGCGGCGGAGCGGGAGATGACGACCTGC
GGGGCAACGGCGGCGACGACATTTTATACGCCGGCAACGACATCAACTCG
TCGGACCAATTGCATGGTGGCGACGGTGACGATAGCGTCCTTGGCGGCCC
CGGTATCAGTAGATTATTCGGAAATGACGGCAATGACCTACTGATCGGCG
GGGACAAAGACGACTTCGCTTCCGGTGGCGAAGGCGATGATACGATTTAT
CCAGGAGCAGGCGACGACACTGTTATTACAGGTAATGGCGATAACGTCGT
TGCGGGGTTTGATGGGGATGACACCATCACCGGTGGCACCGGAATGGACA
TACTGTATGGGGGCAAGGGCGAAGATACGATTGATGGTGGTGGAGGACAA
GATACCATCGGTGGGCAAGACGATAACGACACCCTTGCTGGTGGTGACGG
CGAAGACTTCATCATCGGCGGCGATGGCGATGACGAAATTTCAGGTGGTC
GCGGGAACGATTCGCTGTTTGGAGACCACGGAGACGACGTTATTTTTGGT
GGATCTGGTGACGACTCAATCCATGGCTACTTTGGCAACGACCGGCTATT
TGGTGGCAGTGGTGACGACGGTGTTTATGGTGACGACGGAACGGATGGTC
TCTCTGGAGGTTCAGGCAGCGACGTCGTTGGCGGCGGTGCCGGC
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