mRNA_P-canaliculata_contig9677.23713.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9677.23713.1
Unique NamemRNA_P-canaliculata_contig9677.23713.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9677.23713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9677contigP-canaliculata_contig9677:477..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817329.086309-CDS-P-canaliculata_contig9677:476..8631622817329.086309-CDS-P-canaliculata_contig9677:476..863Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9677 477..863 +
1693495227.469736-CDS-P-canaliculata_contig9677:476..8631693495227.469736-CDS-P-canaliculata_contig9677:476..863Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9677 477..863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817329.0977416-UTR-P-canaliculata_contig9677:863..9501622817329.0977416-UTR-P-canaliculata_contig9677:863..950Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9677 864..950 +
1693495227.4786022-UTR-P-canaliculata_contig9677:863..9501693495227.4786022-UTR-P-canaliculata_contig9677:863..950Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9677 864..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9677.23713.1prot_P-canaliculata_contig9677.23713.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9677 477..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9677.23713.1

>prot_P-canaliculata_contig9677.23713.1 ID=prot_P-canaliculata_contig9677.23713.1|Name=mRNA_P-canaliculata_contig9677.23713.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
LASAINRRQSPDEIATAGRSVASSRWDSWCSSETAAFVVVAIVDISTILE
RGVLSASVSPPGALRLRFRNLLPAPTGESLAGAPDKGLLGQTVDARRRVV
ICCKPRLLSLLASASATTFPRVAGPPPA*
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mRNA from alignment at P-canaliculata_contig9677:477..950+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9677.23713.1 ID=mRNA_P-canaliculata_contig9677.23713.1|Name=mRNA_P-canaliculata_contig9677.23713.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at P-canaliculata_contig9677:477..950+ (Pelvetia canaliculata dioecious)
CTCGCCTCGGCCATCAACCGCAGGCAATCTCCGGACGAAATCGCCACCGC
CGGCAGAAGCGTCGCAAGCAGCAGATGGGACTCTTGGTGCTCGTCGGAAA
CCGCTGCGTTCGTGGTCGTGGCCATCGTCGACATTTCCACGATTCTCGAG
CGGGGGGTCTTGAGCGCCTCGGTCTCGCCGCCAGGAGCGTTGCGGCTCCG
CTTTAGAAACTTGTTGCCGGCGCCGACGGGCGAATCGCTGGCCGGAGCAC
CAGATAAGGGACTACTAGGGCAGACCGTGGACGCTCGTCGCCGTGTGGTG
ATTTGCTGCAAGCCCCGTTTGTTGTCACTACTCGCATCTGCATCAGCGAC
GACCTTTCCTCGCGTTGCGGGTCCGCCGCCAGCTTGATCGCCTGGCCTAC
TGATGTTTTCGGACGCTCGTGACTGCCGTCGTCTCTTCGATGATGTCGCC
GGCGCTAGAGGCGGAGGCGGGGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9677:477..950+

>mRNA_P-canaliculata_contig9677.23713.1 ID=mRNA_P-canaliculata_contig9677.23713.1|Name=mRNA_P-canaliculata_contig9677.23713.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig9677:477..950+ (Pelvetia canaliculata dioecious)
CTCGCCTCGGCCATCAACCGCAGGCAATCTCCGGACGAAATCGCCACCGC
CGGCAGAAGCGTCGCAAGCAGCAGATGGGACTCTTGGTGCTCGTCGGAAA
CCGCTGCGTTCGTGGTCGTGGCCATCGTCGACATTTCCACGATTCTCGAG
CGGGGGGTCTTGAGCGCCTCGGTCTCGCCGCCAGGAGCGTTGCGGCTCCG
CTTTAGAAACTTGTTGCCGGCGCCGACGGGCGAATCGCTGGCCGGAGCAC
CAGATAAGGGACTACTAGGGCAGACCGTGGACGCTCGTCGCCGTGTGGTG
ATTTGCTGCAAGCCCCGTTTGTTGTCACTACTCGCATCTGCATCAGCGAC
GACCTTTCCTCGCGTTGCGGGTCCGCCGCCAGCTTGACTCGCCTCGGCCA
TCAACCGCAGGCAATCTCCGGACGAAATCGCCACCGCCGGCAGAAGCGTC
GCAAGCAGCAGATGGGACTCTTGGTGCTCGTCGGAAACCGCTGCGTTCGT
GGTCGTGGCCATCGTCGACATTTCCACGATTCTCGAGCGGGGGGTCTTGA
GCGCCTCGGTCTCGCCGCCAGGAGCGTTGCGGCTCCGCTTTAGAAACTTG
TTGCCGGCGCCGACGGGCGAATCGCTGGCCGGAGCACCAGATAAGGGACT
ACTAGGGCAGACCGTGGACGCTCGTCGCCGTGTGGTGATTTGCTGCAAGC
CCCGTTTGTTGTCACTACTCGCATCTGCATCAGCGACGACCTTTCCTCGC
GTTGCGGGTCCGCCGCCAGCTTGA
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