mRNA_P-canaliculata_contig961.23648.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig961.23648.1
Unique NamemRNA_P-canaliculata_contig961.23648.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: D7FUB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB0_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 2.760e-122
Identity = 189/233 (81.12%), Postives = 209/233 (89.70%), Query Frame = 1 
Query: 1093 GRAGQGRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQM 1791
            G    GR+  +   V     V +GADGSAYLEMGQTK+IAIVKGPREVTRRQDR++D  IV+CEYN+APFSGSERK+RRPT+RK +EIA AVKEVFEGA+MLHLYPRTQIDIYLHV+QSDGGVLPVG+NAASLAL+DAGVAMSDLVVACSAGYLDG PVMDLNYVEQALGGPYLPVAVLP KDK+L+AKMESRLPLEIFEEVLRAATDACQQVH +L+AAVKEHA  LLSSQ+
Sbjct:   12 GLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEHAGALLSSQI 244
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BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A835YHF5_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHF5_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.110e-89
Identity = 141/233 (60.52%), Postives = 189/233 (81.12%), Query Frame = 1 
Query: 1093 GRAGQGRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQM 1791
            G    GR+  +   +   L V + ADGSAYLEMGQTKVIAIVKGP EV+RR D   D AIV+CE+NLAPF+GS+R++RRPTDRK+VE+A ++K VFEGAVML LYPRTQID+Y+H++Q+DGG LP  +NAASLAL DAG++M D+VV+CSAG++DG  VMDLN++EQ+ GG Y+P+A+LP   +IL+AKME+RLPL+IF+EVL  A +AC+QVH +++  V+EH + LL++Q+
Sbjct:   11 GLRPDGRRAKEIRRIRCRLGVLREADGSAYLEMGQTKVIAIVKGPHEVSRRSDMLIDKAIVNCEFNLAPFAGSDRRKRRPTDRKTVEMAMSIKAVFEGAVMLELYPRTQIDLYIHLIQTDGGQLPASINAASLALTDAGISMRDMVVSCSAGHVDGQAVMDLNHMEQSHGGAYVPLAILPRGSEILLAKMEARLPLDIFQEVLATALEACRQVHAIMRGEVREHHAALLAAQL 243
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BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A7S2V0R5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0R5_9STRA)

HSP 1 Score: 262 bits (669), Expect = 7.770e-79
Identity = 125/235 (53.19%), Postives = 180/235 (76.60%), Query Frame = 1 
Query: 1093 GRAGQGRKNDDDASVARTLVV--EQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQM 1791
            G    GR+ ++   ++  + V  ++G DGSAYLE GQTKV+  V+GPRE  RR +  H+  I+ CE++ APFSG++RK+RR  DR+S EIAQ V++ FEGAVM  LYPRTQIDI+LH++Q+DGG L   +NAASLAL+DAGV M D+VVAC+AG+++ TP+MDLNYVE++ GGP LP+AV+P ++++++A+M+++LPL++FE VL  A  AC QVH +L   ++EHAS +LS ++
Sbjct:    6 GLRSDGRRANEIRRLSCQMGVFDQEGCDGSAYLEQGQTKVMCFVRGPREPDRRAEALHNHCIIRCEFHAAPFSGTDRKKRRQGDRRSQEIAQGVRQTFEGAVMRELYPRTQIDIHLHLLQADGGTLCACLNAASLALVDAGVGMKDMVVACTAGFIEATPIMDLNYVEESSGGPCLPLAVMPKRNEVVLAQMDAKLPLDVFEAVLETARQACDQVHTVLSNELREHASKMLSCRL 240
[Close]
BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A6V1TQR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TQR2_HETAK)

HSP 1 Score: 251 bits (640), Expect = 1.600e-74
Identity = 121/214 (56.54%), Postives = 166/214 (77.57%), Query Frame = 1 
Query: 1150 VVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQM 1791
            V  QG DGSAY+E GQTK++ +++GP E  RR D   +  ++  +Y  A F+G+ERKQRR TDR+S E+ +AV+E   GAV   LYPR+QID+YLHV+Q+DGG LP  +NAASLAL+DAGVA  D+ VAC+AG + G  V+DLNY+EQ  GG YLPVA+LP ++KI++A M+S+LPLE+FEEVL+ A +ACQ+V+++LQ  V+EHAS +LSS++
Sbjct:   33 VNHQGYDGSAYIEQGQTKILCVLRGPHEPDRRSDASDEGCLIKVQYAQAAFAGTERKQRRVTDRRSAEVCRAVQETLAGAVCRELYPRSQIDVYLHVLQTDGGELPCAINAASLALVDAGVAARDMAVACAAGRVAGETVVDLNYMEQNSGGVYLPVAILPKRNKIVLAMMDSKLPLEVFEEVLQVAMEACQEVYSVLQNEVREHASKVLSSRL 246
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BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A1Y1I745_KLENI (3'-5'-exoribonuclease family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I745_KLENI)

HSP 1 Score: 226 bits (577), Expect = 2.060e-65
Identity = 112/219 (51.14%), Postives = 155/219 (70.78%), Query Frame = 1 
Query: 1108 GRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEH 1764
            GR+  +   +   L V   ADGSAYLEMG TKV+A V GP EV++R    HD A+VHCEY++A FS  ER++R   DR+SVE++  +++  E A++ HL PRTQIDIY+ V+Q+DGG     +NAA+LAL DAGV M DLV +C+AGYL+GTP++DLNYVE + GGP L VA+LP  +K+ + +M+S+LPL+ FE VL  A D C+ +   ++ A+ EH
Sbjct:   13 GRRPKEVRQLKCELAVLHRADGSAYLEMGNTKVLATVYGPHEVSQRSQSLHDRALVHCEYSMATFSTGERRRRPKGDRRSVELSLVIRQSMEAAILTHLLPRTQIDIYVQVLQADGGTRAACINAATLALADAGVPMRDLVASCAAGYLNGTPLLDLNYVEDSAGGPDLTVALLPKAEKVTLLQMDSKLPLDTFEAVLGLAMDGCKAIAAHMRQALLEH 231
[Close]
BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A7S1G3R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3R3_9STRA)

HSP 1 Score: 225 bits (574), Expect = 6.140e-65
Identity = 107/200 (53.50%), Postives = 148/200 (74.00%), Query Frame = 1 
Query: 1165 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEH 1764
            ADGSAYLE G TK +A+V GP+++TRR D  HD A V+CE++ APF+GSERK+ R +DR++ E +  +K+ FEG +  HLYPR+QIDI++ V+Q+DGG     +N A+LALIDAG+AM D VVAC+AG+LD T ++DLN VE   GGP + VA++P   K+   +MESRLP++ FE VL  A   C+ + ++LQAAV+EH
Sbjct:   35 ADGSAYLEQGNTKAVAVVYGPKQITRRADALHDRASVNCEFSTAPFAGSERKKVRASDRRAAEASLMLKQTFEGVIQRHLYPRSQIDIFVQVLQADGGERAAAINVATLALIDAGIAMDDFVVACTAGFLDDTALLDLNSVETGPGGPRVEVAMVPQTGKLTAVQMESRLPVDHFEAVLELALSGCRHIFDVLQAAVREH 234
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BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A0D2U8G7_CAPO3 (Exosome component 4 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U8G7_CAPO3)

HSP 1 Score: 223 bits (569), Expect = 3.790e-64
Identity = 110/225 (48.89%), Postives = 160/225 (71.11%), Query Frame = 1 
Query: 1108 GRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLS 1782
            GR+ ++   +   + V   ADGSAY+E G TK++A V GP EV+R+    HD AI++CEY +A F+ +ERK+   TD++++++A AV+  FEGAVM  LYPR+QIDI+L V+QSDGG   V +NAA+LAL+DAG+AM D V ACS G +D TP++D+NY+E + GGP L VAVL    K ++ +M+SRL ++ F++VLR A D CQ +H++L +A+ E    LL+
Sbjct:   18 GRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSILDSAMVERTKALLA 242
[Close]
BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: D2VEP3_NAEGR (Predicted protein n=2 Tax=Naegleria TaxID=5761 RepID=D2VEP3_NAEGR)

HSP 1 Score: 223 bits (567), Expect = 6.490e-64
Identity = 102/233 (43.78%), Postives = 162/233 (69.53%), Query Frame = 1 
Query: 1090 KGRAGQGRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQ 1788
            +G    GR++ +  ++   L +   ADGSAY E G T+V+A V GPREV  +   ++D AI++CEY++A FS  ERK++   DR+S EI+  +++ FE  ++ HLYPRTQIDI++ V+Q+DGG     +NAA+LAL+DAG+ M D VV+C+AG++ G+P+ DLNY+E   GGP +P+A+LP  DK+ + +M+S+L L+ FE+VL  A + C+Q+H ++   +K+H   L++ +
Sbjct:   11 EGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKR 243
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BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: W7U2L9_9STRA (Exosome complex exonuclease rrp41 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2L9_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.530e-63
Identity = 118/255 (46.27%), Postives = 162/255 (63.53%), Query Frame = 1 
Query: 1027 MRRTLAEVRLSSWVYFPLAVRKGRAGQGRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQM 1791
            MRR   E     WV        G    GR+ ++   V  TL     ADGSA L+ GQT+V+AIV GP EVTRR + +HD  I+ CE+   PFSG +RK+RRPTDR S+E + A+K+ FE AVM +LYPRTQ+DI ++V+Q DG +LP  +NA SLAL+DAGVAM ++V ACS   LD  PV+D+ Y EQ+ GG Y+P+A  P   +I++ + E+RL  E  EE++  A +  +QV  L Q  VKE+   L  +++
Sbjct:    1 MRRGAGE-----WVSLA-----GLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARL 245
[Close]
BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Match: A0A7S4MNL2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNL2_9EUKA)

HSP 1 Score: 216 bits (549), Expect = 4.440e-61
Identity = 106/245 (43.27%), Postives = 164/245 (66.94%), Query Frame = 1 
Query: 1054 LSSWVYFPLAVRKGRAGQGRKNDDDASVARTLVVEQGADGSAYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQRRPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGVNAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAVLPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGLLSSQ 1788
            ++S+    L   +G    GR+  +   +   + +   ADGSAY + G T+VI  + GP E   R++  HD A+++CEY++APFS  ERK+ R  DR+S EIA  +K+ FE  V+  L PR+QIDI++ V+Q+DGG     +NAA+LALIDAG+ M + V +C+AG+++GT ++DLNY+E + G   +PVA+LP  +K++M +M+S+L LE F+EVLR A + C+ VH +L  AV+E  + L+SS+
Sbjct:   18 MASFRKDELISEEGLRVDGRRAKELRRIQSKMGIVPDADGSAYFQQGHTEVIVTIYGPMEAKSRRNMSHDRAVINCEYSMAPFSTGERKETRKGDRRSTEIALLIKQTFESVVLCELAPRSQIDIFISVIQADGGTRCAAINAATLALIDAGIPMREFVCSCAAGFVNGTAILDLNYLEDSSGAD-IPVAMLPQSEKVIMLQMDSKLRLEEFDEVLRLAMEGCKAVHEILLEAVRERTNALVSSR 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig961.23648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB0_ECTSI2.760e-12281.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YHF5_9STRA1.110e-8960.52Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2V0R5_9STRA7.770e-7953.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1TQR2_HETAK1.600e-7456.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Y1I745_KLENI2.060e-6551.143'-5'-exoribonuclease family protein n=1 Tax=Klebs... [more]
A0A7S1G3R3_9STRA6.140e-6553.50Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0D2U8G7_CAPO33.790e-6448.89Exosome component 4 n=1 Tax=Capsaspora owczarzaki ... [more]
D2VEP3_NAEGR6.490e-6443.78Predicted protein n=2 Tax=Naegleria TaxID=5761 Rep... [more]
W7U2L9_9STRA2.530e-6346.27Exosome complex exonuclease rrp41 n=3 Tax=Monodops... [more]
A0A7S4MNL2_9EUKA4.440e-6143.27Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig961contigP-canaliculata_contig961:16465..22180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.5
Seed ortholog evalue5e-102
Seed eggNOG ortholog2880.D7FUB0
Preferred nameEXOSC4
KEGG koko:K05289,ko:K11600,ko:K11662,ko:K12590
KEGG Pathwayko00563,ko01100,ko03018,map00563,map01100,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0001558,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006304,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008334,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030307,GO:0030847,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045006,GO:0045111,GO:0045927,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071044,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1068@2759
Ec32 ortholog descriptionRrp41 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-03_000910.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size2247
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig961.23648.1prot_P-canaliculata_contig961.23648.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig961 17491..21727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.1360362-UTR-P-canaliculata_contig961:16464..174901622817324.1360362-UTR-P-canaliculata_contig961:16464..17490Pelvetia canaliculata dioeciousUTRP-canaliculata_contig961 16465..17490 +
1693495224.2045069-UTR-P-canaliculata_contig961:16464..174901693495224.2045069-UTR-P-canaliculata_contig961:16464..17490Pelvetia canaliculata dioeciousUTRP-canaliculata_contig961 16465..17490 +
1622817324.2532773-UTR-P-canaliculata_contig961:21727..221801622817324.2532773-UTR-P-canaliculata_contig961:21727..22180Pelvetia canaliculata dioeciousUTRP-canaliculata_contig961 21728..22180 +
1693495224.2842445-UTR-P-canaliculata_contig961:21727..221801693495224.2842445-UTR-P-canaliculata_contig961:21727..22180Pelvetia canaliculata dioeciousUTRP-canaliculata_contig961 21728..22180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.1518059-CDS-P-canaliculata_contig961:17490..177081622817324.1518059-CDS-P-canaliculata_contig961:17490..17708Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 17491..17708 +
1693495224.2165926-CDS-P-canaliculata_contig961:17490..177081693495224.2165926-CDS-P-canaliculata_contig961:17490..17708Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 17491..17708 +
1622817324.1717865-CDS-P-canaliculata_contig961:18643..187311622817324.1717865-CDS-P-canaliculata_contig961:18643..18731Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 18644..18731 +
1693495224.2258847-CDS-P-canaliculata_contig961:18643..187311693495224.2258847-CDS-P-canaliculata_contig961:18643..18731Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 18644..18731 +
1622817324.1903746-CDS-P-canaliculata_contig961:19268..193481622817324.1903746-CDS-P-canaliculata_contig961:19268..19348Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 19269..19348 +
1693495224.2345285-CDS-P-canaliculata_contig961:19268..193481693495224.2345285-CDS-P-canaliculata_contig961:19268..19348Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 19269..19348 +
1622817324.2086146-CDS-P-canaliculata_contig961:19660..198201622817324.2086146-CDS-P-canaliculata_contig961:19660..19820Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 19661..19820 +
1693495224.246762-CDS-P-canaliculata_contig961:19660..198201693495224.246762-CDS-P-canaliculata_contig961:19660..19820Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 19661..19820 +
1622817324.2235157-CDS-P-canaliculata_contig961:20186..203421622817324.2235157-CDS-P-canaliculata_contig961:20186..20342Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 20187..20342 +
1693495224.2629478-CDS-P-canaliculata_contig961:20186..203421693495224.2629478-CDS-P-canaliculata_contig961:20186..20342Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 20187..20342 +
1622817324.239666-CDS-P-canaliculata_contig961:21661..217271622817324.239666-CDS-P-canaliculata_contig961:21661..21727Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 21662..21727 +
1693495224.2726686-CDS-P-canaliculata_contig961:21661..217271693495224.2726686-CDS-P-canaliculata_contig961:21661..21727Pelvetia canaliculata dioeciousCDSP-canaliculata_contig961 21662..21727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig961.23648.1

>prot_P-canaliculata_contig961.23648.1 ID=prot_P-canaliculata_contig961.23648.1|Name=mRNA_P-canaliculata_contig961.23648.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=256bp
MRRTLAEVRLSSWVYFPLAVRKGRAGQGRKNDDDASVARTLVVEQGADGS
AYLEMGQTKVIAIVKGPREVTRRQDRRHDLAIVHCEYNLAPFSGSERKQR
RPTDRKSVEIAQAVKEVFEGAVMLHLYPRTQIDIYLHVVQSDGGVLPVGV
NAASLALIDAGVAMSDLVVACSAGYLDGTPVMDLNYVEQALGGPYLPVAV
LPAKDKILMAKMESRLPLEIFEEVLRAATDACQQVHNLLQAAVKEHASGL
LSSQM*
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mRNA from alignment at P-canaliculata_contig961:16465..22180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig961.23648.1 ID=mRNA_P-canaliculata_contig961.23648.1|Name=mRNA_P-canaliculata_contig961.23648.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5716bp|location=Sequence derived from alignment at P-canaliculata_contig961:16465..22180+ (Pelvetia canaliculata dioecious)
GTGTCCCTTATCTACTCCTCGTCACTCTTTTCGAACTTGATTGATTGATT
GATTCGCGCTGTTAACGTATGGTCCTTCCAACGGAAGATTACGGCGGCAT
AAACATTTAGCCCCAATCTATTCTAATCTATTCTATGCCAATCCCGCTTG
TGGTCGCAAAGAGGCATGAAGGTGAGGGGGTCACGTCATGGTGGCACCCC
GCTGCTCAAACAAAAAAGGATCCGAAATCGCGGCAAAACACTCTAGAAGG
ACAAATACCGACCGAAGTTAAATTCGTTCACCAAAATTCCTGTCAACTTG
GGTTGCTGTTATCTACCCGCATCCAGCGCTCTTAAGCTACGAAACGAAAG
AGTCACACCCTCCCTCCGATCGTTTCGATCAACAAAATCCTCTTTTCTCC
AAGGTGACATCATTATACAGCAAAAGGAAAACTCTTGTACCGAGGTCAAT
GAGTGATGGAGGCCTTGAGCTGTGAAGCCGGCGCCCGAGCCAGTATCCAC
CCTTTAAATGCCCCGATTCCCCTTGGAAAGCGCCCCAGAAATATTGCCCG
TTCGCCGCTCCAAGTTGACTCTCGTAGGAAGAAATCAGACCGCAGTCATT
AATCGTCTTTCTCTTCTGAAACCTCCCCGTTCTCGCCGCTGATTCTCGCG
TGCAAGGGTTCAGCAATCCCTTGGGCTCGTCGACCATCGAACCACCCTCC
ACCCTCGCCGAACGGAACTCGCTGGTGCTTGCTGCGGCACCGTACCAGGC
TTTCCGTGACAGCGCATTCTGCCTCCCGCGCGCGACACCCTCCCGAAAGG
CTCCAAACTGGCGTTCGAGAGAGGCCCACATAATGAACACCACATCCTGA
CACCACACACACACACTGCCAAAGCTTGTCAACCAACCGCCCAAACCAGG
CCGAGAACGAGTTGGTGTCACCTTATCTACTGGTACAAGACAGATAGTCG
GTAGCTTGTTTTCTGGGAGCTTTGAAGTGACGTGTCGTCGACAACGCTTC
TATTTTAAGATTAGGCGCTGTGGCGGATGCGGAGAACCCTCGCCGAGGTC
AGGTTGTCCTCGTGGGTATACTTTCCACTCGCGGTACGTAAGGGCAGGGC
AGGGCAGGGAAGGAAGAATGATGATGACGCCTCTGTGGCGCGAACGCTTG
TGGTCGAACAGGGAGCAGATGGATCGGCGTACCTTGAGATGGGACAGACC
AAGGTGATCGCCATCGTCAAGGGCCCGAGGGAGGTAACTCGAAGGTATGA
TGTGTGATGTGCGATTGGAGGTGTGATGTGATTGAAGGTGTGATATGTGA
TTGAAGGTATGATATGTGATTGAAGGTGTGATGTGATTGAAGGTATGATG
TGTGATTGAAGGTGTGATGTGATTGAAGGTGTGATATGATTGAGACAACC
CGACAGGACGTCTTAGGAGCAAAGCACATCGCCGGTCGCGATCCCCCAAC
CGTTTAAAATGCACGTACTGATTGTAGAGCTATATGGAACTGCTGTGCGG
TGGTACCCAAGGTAGACTCGAAGAGGGTTGGCTGCCAGCGCATTCCTTCT
TCATTTGAGCTACTGCCGAACTCAACTCCGTAGACAGGTCCCTGCAACTC
AGACGTCGTGCTTATACCGGGAAAGCGAGACACCATGTACTGTACTATAC
TATAATGTACTCTACTATACTGTACTTTATTGTAGTAACTGAAGAGGGAG
GGAGGGAGTGTTGCGGCGTGAAAGTCTAGGGCAACTACAGGACCAAAAGG
GCCCACGTTAAATCCGTTGAATCAGTTAGGAGTCACCCAGGGACAGGGAC
ATGTCCACATGTTGTCCCCTCCATGGCTAGCGAGACGCACGATGTCGAAC
CCCCGTGGTACTCTACTCTAGTCAATTCTATTCTTTTTATAGTGTAGAGC
TACATGATTATCTTGTCAAAATATGCAAGTGAGAAACGCCCACCGCGTTC
AAATTCCAAGAATTTTCTCGTTAATACTCGATATTATTGCTATAATATTC
CACTAATACTCGATAATATTCCACTAATACTCGATAATATTTCAATAATA
CTCGATAATATTCCACTATTACTCGATAATATTCCACTATTACTCGATAA
TATTCCACTAATACTCGATAATATTCCACGTCCAACCCTTTCCGTTCGAC
GGACCCGAACCTTCCCTTCCCTTGGACAGGCAGGACCGAAGACACGACTT
GGCTATCGTCCACTGCGAGTACAACTTGGCGCCCTTCAGCGGCAGCGAGC
GGAAGCAGCGACGCCCGGTTAGTTTCTTTCAAGAGCGAAAGACGACAAGG
TCGCGATCCTACTGAATACGTTTGTCCTCGCGAGGTACTACAATAGGAGG
GATGGAGAGAGAGCGGATCATAACAGCGAGAGAGAGCTGCCGACGAAACG
CTAACCGTGTTATTTCTTGGAACGGGGGCACGCCACCTGGTCGCCACTTT
CTCGTGTTTACCTAGCAGTCTGGACTTGAGATGACCTCTAAATCCTGAAG
TAAGCGCTGGGGGAATCGTTGCGATCGTTGGAGCCTACGAATGAGAAGCG
TCTGGGAGACACTATAATAGTAATGTTCATTACATGCAGTATACTGTAGT
TACCTTAGTTACCCCTCTAAACTCTCCCGTAATAGTGACTACCATAGTAC
TGCACCAAGTAACTGTAAATAGTCGAACCTGCCGTGGAGAAAGTCGAACT
CGTCGCCTTCCGAAGACTACGGTAGAGTCTATTTTATCTATCCCCGCTAG
TAGCCCATTCCCTGTTGCAAACGACTGTGGCGTCGTCCCCCATCCCTTCC
CTAGACAGACCGAAAGAGCGTGGAGATTGCTCAGGCGGTGAAAGAGGTGT
TCGAGGGAGCGGTCATGCTGCACCTGTACCCCAGGTGCGCTACCGTGGGA
ACGGTTCAGAGAACGATCCCCGGAACGGTCTTTAACGTGATGCGCGCTCG
CCTTGGTGACTTTCCCTCGTTGCAGAAGCAATACACCCTAAGTCGACCGG
ATGAGGATGCGCATACATGTTTTTTACGCTGTTGAAAGCGTAGTTCAGCG
CGACCAAAAGACTCCATGACAGGAAATTTCATGCTAAAACACACTTGGCT
GGACCAAGACCAACTTGAGGGGCTTCATCGCTCTTGCTGGGGTGTCTATC
CCGTATCCCGTACCCCGTATTTCGTGTTCCATACCTCGTATCTCAGGACC
CAGATCGACATCTACCTTCACGTGGTTCAGTCGGATGGAGGGGTGCTTCC
CGTCGGAGTCAACGCTGCGTCGCTGGCCTTGATCGACGCGGGAGTTGCAA
TGTCGGATCTCGTGGTGGCGTGTTCGGCAGGTTATCTCGATGGCACCCCT
GTCATGGTGAGAGGTACGGGCGGGCAGCGAGAAACGTGATGCGCTACAAG
CAGTCCGGTTGATCTGGCAGAGTGCCTCAACTCTTATCCATCGCTCGTCT
GGCTGCTTCCCGACGGATGTTAGCCTTCCGACGAATGTCTCCATTTGCCT
CCGACGAATGTCTTTATTTGCCTCCGGCTAATATCTCCCTTTGCCTCCGA
CGAATATCTCCCTTTGCCTCCGACGAATATCTCCCTTTGCCTCCGACAAA
TATCTCCCTTTACCTCCGACGAATGCCTCCCCGTGCCTCCGACGAATATT
TCCCTTTGCCTCCGACGAATATTTCCCTTTGCCTCCGACGAATGTCTCCC
TTTGGTACGACAAAACAAAAAGGACCTCAACTACGTGGAGCAGGCACTCG
GAGGACCCTACCTTCCCGTGGCGGTGCTGCCAGCGAAGGACAAGATTCTC
ATGGCCAAAATGGAGTCGCGACTGCCCCTGGAAATTTTTGAGGAGGTGCT
GAGGGCGGCCACCGATGCGTGTCAGCAGGCGAGTGGAGCTCGCGTTCCGT
GACGTCTCTCGATGCGCTGAACTTCCCGTAGCGAGACAAGTGTAAGATAC
TGTATGTAAAGCGTAGAAAGGGCCAACACCGCGGTATTGTATTGATTTTA
GTACTGTAGTTGAAATCTGTTAGTCACACGGAAAACGTTGCGTTTTGGTG
AAAATCCGTCCGAGGTCGTTTTGTTTGAAAAACACGCTTGGATTGGGGTA
GGAAATGCCTAGAGGGGATTGGGGTAGGAAATGCCTAGAGGGGATTGGGG
TACGAATATCCTCAGATTGTTCGCGGGAAAAGCGCGAGAAGGCGAAAGAG
GACAGCGGTCTCTTTTCATCCTATTAGACTGTAGTGTACAGTATTTCGTG
TAGTATTGATAGTAATGGAGGGTGTCACAACGTACCTTGGAACCTGACGC
AAAGCTGCAAGGAACTCAGGTCGGACGTTGATTCAAATGTAGTGTAGCAT
ATGCGTCATGCAGCTGCTTCACAAGGGCGCGGAGGACGGAAGATATGCAG
CACGTGTGTAGACCCACAGAGTAGCTCATGTCTTGCCTTCGATACCAAAA
TGAATGTATGTACTCCATAAAGCGTTCGCGATGGCTTGTCATGGCCGCTG
TATCCTTGGTGGCCATGAAAAATTCCATTCTTGATATCGCAGGCACCATC
CGCAAGTTCTCTTATCCCGGTGGATTATTAACTGACCGGGTAGATAATAG
AGGGGCTGTTCGTATTCCGTAATAAAAATTACAGGTCTCCCGTTCTCACA
GTTTGTTTCAGAACAAAGACATTATATATTATGGCTAGCGTTATGGTTTG
TGTGTACCGCATCTTTGGGTTGCTCGTGTCTTACGCCCGTGGCTCACAAA
AGCGAGATAAGCGCAACACTTGAGCCCCCGGAAACGTATGCAACTCAGTG
ATAGGTCGAGGCTTGCCCCGAACGTGTCTGTCATCAGTCGAGATAAGCGC
AACGCTTAAGTTTGCAAGTGGGCCTTTGGTTGAGGATTAGCCCGCACGTT
TCGAACGTTTCGGTCATTGGTCGAGATGAGTGCAACGCTTAAGTATGCAA
GTCGGTCATTGGTCGGCGATTGCCCCGAACGTTTCGCCCCTTTGGTCTTC
AATTGGTGAAATGAAGATGTGAGCCAAGCTTGCCGTAGCTATAGCACCTT
GGGAAAAGGACAATATCGCCCACATCCATTCGATCCTGTCATACCCCCCG
TGATTTGATCGCTGCTAGCGAGCTACTTGCTGAACATTTTGCTTGATTGC
TCCCTCGTCCCCTTTCCCCCGAATATCGTATGCCGCCTTTCCTCTAGGTG
CATAATTTGCTGCAGGCGGCGGTGAAAGAACACGCGAGCGGCCTCTTGAG
CTCCCAGATGTAGACTAGCTTGTAGTAATCATGATGATCGTACCTTGGTT
TGGTGCTTACACTCTTAAGTGTCGGACAGAGAGAGAAGAGAGAAAAACCC
TGAATCACCGAGTCGAACTGCTGCACCATCCATGGCCTAAAGTGTGCAAG
GGTCATCAGACAAAATAATCGGTTTAAGCTGAGCGGATGTCTCCCAGGAG
CTGAACACAACAAGATGGCGGCCGGGTGGGCCTCTCGATGTGCCAGGTTA
TCAATCTCACTATCATAGCCTACCAAAATACGATTTGATTTCGGACAGCG
GGTGTACAAGAGTATTTGTCCTTGCAGCCAATGTTCGCACGTTGACGTAT
TTTGTCCTTTTGCCCCCGGGATTGGGATGGATGCTCCGAAATTTTAGGAC
CGTCCATATAGTTTGCGGGAGAAACACTGCTGTTGTGGAACATATAGAGC
TTTACGTACTGGTGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig961:16465..22180+

>mRNA_P-canaliculata_contig961.23648.1 ID=mRNA_P-canaliculata_contig961.23648.1|Name=mRNA_P-canaliculata_contig961.23648.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at P-canaliculata_contig961:16465..22180+ (Pelvetia canaliculata dioecious)
ATGCGGAGAACCCTCGCCGAGGTCAGGTTGTCCTCGTGGGTATACTTTCC
ACTCGCGGTACGTAAGGGCAGGGCAGGGCAGGGAAGGAAGAATGATGATG
ACGCCTCTGTGGCGCGAACGCTTGTGGTCGAACAGGGAGCAGATGGATCG
GCGTACCTTGAGATGGGACAGACCAAGGTGATCGCCATCGTCAAGGGCCC
GAGGGAGGTAACTCGAAGATGCGGAGAACCCTCGCCGAGGTCAGGTTGTC
CTCGTGGGTATACTTTCCACTCGCGGTACGTAAGGGCAGGGCAGGGCAGG
GAAGGAAGAATGATGATGACGCCTCTGTGGCGCGAACGCTTGTGGTCGAA
CAGGGAGCAGATGGATCGGCGTACCTTGAGATGGGACAGACCAAGGTGAT
CGCCATCGTCAAGGGCCCGAGGGAGGTAACTCGAAGGCAGGACCGAAGAC
ACGACTTGGCTATCGTCCACTGCGAGTACAACTTGGCGCCCTTCAGCGGC
AGCGAGCGGAAGCAGCGACGCCCGGCAGGACCGAAGACACGACTTGGCTA
TCGTCCACTGCGAGTACAACTTGGCGCCCTTCAGCGGCAGCGAGCGGAAG
CAGCGACGCCCGACAGACCGAAAGAGCGTGGAGATTGCTCAGGCGGTGAA
AGAGGTGTTCGAGGGAGCGGTCATGCTGCACCTGTACCCCAGACAGACCG
AAAGAGCGTGGAGATTGCTCAGGCGGTGAAAGAGGTGTTCGAGGGAGCGG
TCATGCTGCACCTGTACCCCAGGACCCAGATCGACATCTACCTTCACGTG
GTTCAGTCGGATGGAGGGGTGCTTCCCGTCGGAGTCAACGCTGCGTCGCT
GGCCTTGATCGACGCGGGAGTTGCAATGTCGGATCTCGTGGTGGCGTGTT
CGGCAGGTTATCTCGATGGCACCCCTGTCATGGACCCAGATCGACATCTA
CCTTCACGTGGTTCAGTCGGATGGAGGGGTGCTTCCCGTCGGAGTCAACG
CTGCGTCGCTGGCCTTGATCGACGCGGGAGTTGCAATGTCGGATCTCGTG
GTGGCGTGTTCGGCAGGTTATCTCGATGGCACCCCTGTCATGGACCTCAA
CTACGTGGAGCAGGCACTCGGAGGACCCTACCTTCCCGTGGCGGTGCTGC
CAGCGAAGGACAAGATTCTCATGGCCAAAATGGAGTCGCGACTGCCCCTG
GAAATTTTTGAGGAGGTGCTGAGGGCGGCCACCGATGCGTGTCAGCAGGA
CCTCAACTACGTGGAGCAGGCACTCGGAGGACCCTACCTTCCCGTGGCGG
TGCTGCCAGCGAAGGACAAGATTCTCATGGCCAAAATGGAGTCGCGACTG
CCCCTGGAAATTTTTGAGGAGGTGCTGAGGGCGGCCACCGATGCGTGTCA
GCAGGTGCATAATTTGCTGCAGGCGGCGGTGAAAGAACACGCGAGCGGCC
TCTTGAGCTCCCAGATGTAGGTGCATAATTTGCTGCAGGCGGCGGTGAAA
GAACACGCGAGCGGCCTCTTGAGCTCCCAGATGTAG
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