mRNA_P-canaliculata_contig95635.23583.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig95635.23583.1
Unique NamemRNA_P-canaliculata_contig95635.23583.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig95635.23583.1 vs. uniprot
Match: A0A517P3H3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517P3H3_9BACT)

HSP 1 Score: 154 bits (389), Expect = 2.860e-45
Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:    1 MNARESRDYKHLKCKTQTEISGPEYRKLSDPMAGLTETSCTECDAHFPVDEFAWSDTDEKISDYYDRHTKKASEADRFLCSTPGLAVLAAGGFCVGVVFGGILCMLIGGMAGFIIALXXXXXXXXXXXXVNETVIKPKILQKVCGVSDTRNLK 459
            M   ESR Y H KC  +TE+SGPE+  +SDP+AG+  T C++C+  F +DEF W+DT E I DYY RH +KAS+ DR LCS  GL  L   G  +G + G  +C+ IGG+ G  IA               E V+ PKILQ+VCGVSDTR LK
Sbjct:    1 MTTPESRCYTHKKCSAETEVSGPEFHAMSDPLAGMNRTFCSQCEDMFSIDEFVWTDTGESIPDYYQRHGRKASDTDRMLCSNQGLLALGGAGLFIGFMIGTAVCLTIGGLTGIFIAAFLALVGAVGGVIFREAVVTPKILQRVCGVSDTRQLK 153
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BLAST of mRNA_P-canaliculata_contig95635.23583.1 vs. uniprot
Match: A0A5C6DA64_9BACT (Uncharacterized protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DA64_9BACT)

HSP 1 Score: 125 bits (314), Expect = 6.270e-34
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:   13 ESRDYKHLKCKTQTEISGPEYRKLSDPMAGLTETSCTECDAHFPVDEFAWSDTDEKISDYYDRHTKKASEADRFLCSTPGLAVLAAGGFCVGVVFGGILCMLIGGMAGFIIALXXXXXXXXXXXXVNETVIKPKILQKVCGVSDTRNLK 459
            +SR Y H +C+T T + GPE+R +SDPMAG+  T C +C+  FPV EFAWSDT+E IS+YY RH K AS +D + C   GLAVLA  G   G++      +    + G +  +              ET+   +I+++VCGV+DTR L+
Sbjct:    3 DSRSYTHTRCRTDTTVEGPEFRAMSDPMAGMRSTYCVKCEDQFPVTEFAWSDTNELISNYYARHRKAASASDLWWCGNGGLAVLAGLGSVAGIILXXXXXVTTTWLIGLVTGILLAITGAILGLVARETLFSRRIVKRVCGVNDTRMLR 151
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BLAST of mRNA_P-canaliculata_contig95635.23583.1 vs. uniprot
Match: A0A7Y2F4N0_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F4N0_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 9.220e-24
Identity = 63/176 (35.80%), Postives = 85/176 (48.30%), Query Frame = 1 
Query:   13 ESRDYKHLKCKTQTEISGPEYRKLSDPMAGLTETSCTECDAHFPVDEFAWSDTDEKISDYYDRHTKKASEADRFLCS----------------TPGLAVLA-----------AGGFCVGVVFGGILCMLIGGMAGFIIALXXXXXXXXXXXXVNETVIKPKILQKVCGVSDTRNLK 459
            ESR Y H KC   TE+SG  +  +S+PM+ + +T C+ C A FP+ EFAWSDT+E +SDYY RHT  A++  RFLCS                +   A++A           AGGF VG + G  + + + G A                           I +KVCGVSDTR L+
Sbjct:    8 ESRSYTHTKCNEATEVSGQAFELVSNPMSSMEQTMCSTCGAMFPISEFAWSDTNESLSDYYARHTANATDRQRFLCSKTFMMAVIGVAAIITASAAYAIVANDDLLTRSICTAGGFFVGAIIG--MAIFVSGFAN-------------------------PIKRKVCGVSDTRLLR 156
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BLAST of mRNA_P-canaliculata_contig95635.23583.1 vs. uniprot
Match: A0A517SEC0_9PLAN (Uncharacterized protein n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SEC0_9PLAN)

HSP 1 Score: 82.8 bits (203), Expect = 3.570e-17
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   19 RDYKHLKCKTQTEISGPEYRKLSDPMAGLTETSCTECDAHFPVDEFAWSDTDEKISDYYDRHTKKASEADRFLCSTPGLAVLAA 270
            R Y+H +C+ +T ++G  +  +S+PM+ +  T CT C A FP++EFAW D+ E ISDYY RH+  A+   R LCS   +  L A
Sbjct:   10 RTYRHARCQQETIVAGQSFEVVSNPMSSMERTFCTPCGAMFPIEEFAWVDSGETISDYYARHSASATPLQRTLCSKSFMVALIA 93
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BLAST of mRNA_P-canaliculata_contig95635.23583.1 vs. uniprot
Match: A0A518KZ09_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518KZ09_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 5.080e-10
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 1 
Query:    1 MNARESRDYKHLKCKTQTEISGPEYRKLSDPMAGLTETSCTECDAHFPVDEFAWSDTDEKISDYYDRHTKKASEADRFLCSTPG----LAVLAAGGFCVGVVFGGIL 309
            M   ES  Y HL C   TEI GPE+  +++P++G+  T C  C     V+EF W  ++E I+DYY R   +  E +       G    L +   GGF  G+  G IL
Sbjct:    1 MTVPESFHYVHLPCGEFTEIRGPEFESVANPLSGIQTTLCAHCGQQDDVEEFCWEGSEETIADYYHRLLLQIPEQELDRAGRAGMFKYLIMGGIGGFAAGLFIGLIL 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig95635.23583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A517P3H3_9BACT2.860e-4548.37Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6DA64_9BACT6.270e-3441.61Uncharacterized protein n=1 Tax=Novipirellula aure... [more]
A0A7Y2F4N0_9BACT9.220e-2435.80Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A517SEC0_9PLAN3.570e-1742.86Uncharacterized protein n=1 Tax=Caulifigura conifo... [more]
A0A518KZ09_9BACT5.080e-1035.51Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig95635contigP-canaliculata_contig95635:648..1109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.9144182-CDS-P-canaliculata_contig95635:647..11091622817319.9144182-CDS-P-canaliculata_contig95635:647..1109Pelvetia canaliculata dioeciousCDSP-canaliculata_contig95635 648..1109 +
1693495221.560741-CDS-P-canaliculata_contig95635:647..11091693495221.560741-CDS-P-canaliculata_contig95635:647..1109Pelvetia canaliculata dioeciousCDSP-canaliculata_contig95635 648..1109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig95635.23583.1prot_P-canaliculata_contig95635.23583.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig95635 648..1109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig95635.23583.1

>prot_P-canaliculata_contig95635.23583.1 ID=prot_P-canaliculata_contig95635.23583.1|Name=mRNA_P-canaliculata_contig95635.23583.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=154bp
MNARESRDYKHLKCKTQTEISGPEYRKLSDPMAGLTETSCTECDAHFPVD
EFAWSDTDEKISDYYDRHTKKASEADRFLCSTPGLAVLAAGGFCVGVVFG
GILCMLIGGMAGFIIALILGLVGAVVGVVVNETVIKPKILQKVCGVSDTR
NLK*
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mRNA from alignment at P-canaliculata_contig95635:648..1109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig95635.23583.1 ID=mRNA_P-canaliculata_contig95635.23583.1|Name=mRNA_P-canaliculata_contig95635.23583.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at P-canaliculata_contig95635:648..1109+ (Pelvetia canaliculata dioecious)
ATGAATGCACGCGAGTCACGTGACTACAAGCACTTGAAGTGCAAGACGCA
AACGGAAATTTCTGGCCCCGAGTATCGCAAGCTATCTGATCCGATGGCCG
GTTTGACAGAAACGTCTTGCACCGAATGTGACGCGCATTTTCCGGTCGAC
GAATTCGCTTGGTCTGATACGGACGAAAAGATTTCCGACTACTACGATCG
ACACACGAAAAAGGCTTCCGAAGCAGACCGCTTTCTGTGCTCGACGCCTG
GATTGGCGGTGTTAGCGGCGGGCGGGTTTTGCGTCGGTGTGGTGTTCGGT
GGTATCTTATGCATGTTGATCGGTGGCATGGCCGGTTTCATCATCGCACT
GATACTTGGATTGGTCGGCGCTGTAGTGGGTGTGGTTGTGAACGAGACCG
TCATCAAGCCGAAGATTTTGCAAAAGGTGTGCGGCGTATCGGATACGCGA
AATTTGAAGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig95635:648..1109+

>mRNA_P-canaliculata_contig95635.23583.1 ID=mRNA_P-canaliculata_contig95635.23583.1|Name=mRNA_P-canaliculata_contig95635.23583.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at P-canaliculata_contig95635:648..1109+ (Pelvetia canaliculata dioecious)
ATGAATGCACGCGAGTCACGTGACTACAAGCACTTGAAGTGCAAGACGCA
AACGGAAATTTCTGGCCCCGAGTATCGCAAGCTATCTGATCCGATGGCCG
GTTTGACAGAAACGTCTTGCACCGAATGTGACGCGCATTTTCCGGTCGAC
GAATTCGCTTGGTCTGATACGGACGAAAAGATTTCCGACTACTACGATCG
ACACACGAAAAAGGCTTCCGAAGCAGACCGCTTTCTGTGCTCGACGCCTG
GATTGGCGGTGTTAGCGGCGGGCGGGTTTTGCGTCGGTGTGGTGTTCGGT
GGTATCTTATGCATGTTGATCGGTGGCATGGCCGGTTTCATCATCGCACT
GATACTTGGATTGGTCGGCGCTGTAGTGGGTGTGGTTGTGAACGAGACCG
TCATCAAGCCGAAGATTTTGCAAAAGGTGTGCGGCGTATCGGATACGCGA
AATTTGAAGTAGATGAATGCACGCGAGTCACGTGACTACAAGCACTTGAA
GTGCAAGACGCAAACGGAAATTTCTGGCCCCGAGTATCGCAAGCTATCTG
ATCCGATGGCCGGTTTGACAGAAACGTCTTGCACCGAATGTGACGCGCAT
TTTCCGGTCGACGAATTCGCTTGGTCTGATACGGACGAAAAGATTTCCGA
CTACTACGATCGACACACGAAAAAGGCTTCCGAAGCAGACCGCTTTCTGT
GCTCGACGCCTGGATTGGCGGTGTTAGCGGCGGGCGGGTTTTGCGTCGGT
GTGGTGTTCGGTGGTATCTTATGCATGTTGATCGGTGGCATGGCCGGTTT
CATCATCGCACTGATACTTGGATTGGTCGGCGCTGTAGTGGGTGTGGTTG
TGAACGAGACCGTCATCAAGCCGAAGATTTTGCAAAAGGTGTGCGGCGTA
TCGGATACGCGAAATTTGAAGTAG
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