mRNA_P-canaliculata_contig9552.23571.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5JX99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX99_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.740e-45 Identity = 88/202 (43.56%), Postives = 121/202 (59.90%), Query Frame = 1
Query: 58 GRVSARQRIERFPEESLEEVDGKIICRACQKGVTTEKKSTMATHCNGDVHRQALAVFNRKKRSKQTTLALFRDYSKSLGGIHDSLLSDRDLATQIMVVEGCLSVGIPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYRCE--GLVLAFVSSTRKDRSFSECFR*ACSRSLWTS 657
G VSA R + FP +SL GKI C AC + ++ KST+ H G H AL + K+ Q ++ L R++ S+GG + L+ +++ QI+ +GCLS G+PLNAL NP +D LH+ G KLP+ HL+NHIP I K+E+ ILEE+GD NY+VCFDGTPYRCE G+ + F+ T + C R LW S
Sbjct: 119 GSVSAVNRTKDFPHQSLIVEGGKIFCEACGRKPMSKIKSTLKNHVTGTRHTAALVKHRKSKKMHQASMNLLREHFASVGGAYGCTLTPKEVTRQILFTKGCLSAGVPLNALNNPTMKDALHYTGVKLPSANHLANHIPAILKEEI--ILEELGDGNYTVCFDGTPYRCECFGIGIRFIDQTGQ----------ICPRLLWLS 308
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5KEG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG8_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.500e-42 Identity = 90/205 (43.90%), Postives = 128/205 (62.44%), Query Frame = 1
Query: 1 VGGKRNRHQLTG---SKKTQSKGRVSARQRIERFPEESLEEVDGKIICRACQKGVTTEKKSTMATHCNGDVHRQALAVFNRKKRSKQTTLALFRDYSKSLGGIHDSLLSDRDLATQIMVVEGCLSVGIPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYR--CEGLVLAFVSSTRK 600
VGGKR + +G KK K V A +R++ FP + LE + G + C+AC+K + KKST+ HC H A+ F RK+ QT+L +F+++S+ GG + + L ++L TQ+M VE CLS G+ LNAL PL ++F HVGA+L HL+NHIPFI KE KIL+E+GDS YS+ F+ TPYR C G+ + F++ K
Sbjct: 168 VGGKRKKLPRSGRLWQKKIVIKPVVGAHERVKDFPGQRLEVLGGGLYCQACKKSLQI-KKSTVKNHCLSKEHTLAVKDFARKQADIQTSLDMFQEHSELAGGSYGNSLHPKELMTQLMAVEACLSSGVALNALDQPLKKEFFRHVGARLQTARHLANHIPFILNKEKKKILDELGDSRYSITFNETPYRAACFGVGIRFITKAGK 371
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE) HSP 1 Score: 157 bits (398), Expect = 4.060e-40 Identity = 81/196 (41.33%), Postives = 121/196 (61.73%), Query Frame = 1
Query: 4 GGKRNRHQLTGSKKTQSKGRVSARQRIERFPEESLEEVDGKIICRACQKGVTTEKKSTMATHCNGDVHRQALAVFNRKKRSKQTTLALFRDYSKSLGGIHDSLLSDRDLATQIMVVEGCLSVGIPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYRCE--GLVLAFV 585
G K+ H +G KT V+A R++ FP ++L +GK+ C AC + + KST+ H NG H +A+ + K+ +Q ++ +FR++S S+GG + S L+ +++ QI+ +GCLS G+PLNAL NP +D LH G KLP+ HL+N+IP I K EE+GD Y+VCFDGTPYRCE G+ + F+
Sbjct: 150 GPKQGFHVTSGRCKT-----VTAVDRVKEFPNQTLIAENGKLFCEACSRKPLAKIKSTVKKHVNGRKHMEAVKKHQKSKKLQQASMDVFREHSASVGGAYGSTLTPKEVTQQILFTKGCLSAGVPLNALNNPTMKDALHFAGVKLPSANHLANYIPVILK-------EELGDGTYTVCFDGTPYRCECFGIGIRFI 333
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.510e-34 Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = 3
Query: 570 GVGIRFINAEGQIIQRVLSLSMLTKSMDFVTINGEVMKILVDFYKLDRNRCRAFMLDGCAANLKALESLLINFRNAVGVRCFSHLLNN 833
G+GIRF+N EGQI QRVL+LSML+KSMDF I+GEVMKI VD YK+DR++C FMLDGC AN+KAL++LL+NF NAVGVRCFSHLLNN
Sbjct: 77 GIGIRFVNKEGQITQRVLNLSMLSKSMDFKAIHGEVMKITVDEYKIDRSKCVGFMLDGCGANMKALDTLLLNFPNAVGVRCFSHLLNN 164
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5JNC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.710e-24 Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 3
Query: 633 MLTKSMDFVTINGEVMKILVDFYKLDRNRCRAFMLDGCAANLKALESLLINFRNAVGVRCFSHLLNN 833
ML+KSMDF I+GEVMKI VD YK+DR++C FMLDGC AN+KAL++LL+NF NAVGVRCFSHLLNN
Sbjct: 1 MLSKSMDFKAIHGEVMKITVDEYKIDRSKCVGFMLDGCGANMKALDTLLLNFPNAVGVRCFSHLLNN 67
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5KX97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX97_9PHAE) HSP 1 Score: 102 bits (253), Expect = 9.230e-24 Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 298 IHDSLLSDRDLATQIMVVEGCLSVGIPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYR--CEGLVLAFV 585
++ LSDRD Q+ +V GCLS GIPL+ALA+P + F LP HL+ HIPF+ KKE+ L E+G+ NY+VCFD TPYR C G+ L F+
Sbjct: 1 MYGDTLSDRDKFLQVKLVAGCLSAGIPLHALADPQMKAFFDFANICLPGDNHLAEHIPFLLKKELGTTLSELGNGNYTVCFDATPYRYECFGIGLRFI 98
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.430e-23 Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 280 SKSLGGIHDSLLSDRDLATQIMVVEGCLSVGIPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYRCE--GLVLAFVS 588
SK+ GG++ LSDRD Q+ +V GCLS GIPL+AL +P + F + P HL+ H+PF+ +KE++ L E+G+ NY+VCFD TPYRCE G+ L F++
Sbjct: 2 SKAKGGMYGDTLSDRDKLLQVKLVAGCLSAGIPLHALEDPQMKAFFDFANIRAPGRSHLAEHVPFLLRKELDTTLSELGNGNYTVCFDATPYRCECFGIGLRFIN 106
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5KPH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 5.590e-22 Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 265 LFRDYSKSLGGIHDSLLSDRDLATQIMVVEGCLSVG-IPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYRCE--GLVLAFVSST 594
+FR++S S+GG + L+ +D+A +I+ +GCLS G + P +D H+ G LP+ L+NHI I K+EM IL E+GD NY+VCFDGT YRCE G+ + F+ T
Sbjct: 3 VFREHSASVGGAYGCTLTPKDVAQEILFTKGCLSAGLVTFERPEQPRMKDAYHYAGVMLPSANRLANHITVILKEEMKIILGELGDGNYTVCFDGTLYRCECFGIGIRFIDQT 115
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.690e-20 Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 3
Query: 633 MLTKSMDFVTINGEVMKILVDFYKLDRNRCRAFMLDGCAANLKALESLLINFRNAVGVRCFSHLLNN 833
ML+ SMDF INGEVMK++VD Y+LDR +C FMLDGC+ANLKAL++L +NFR A GVRCFSHL N
Sbjct: 1 MLSNSMDFAAINGEVMKVVVDDYRLDRQKCVGFMLDGCSANLKALDTLKMNFRIATGVRCFSHLCKN 67
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Match: A0A6H5JN03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN03_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.180e-19 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 295 GIHDSLLSDRDLATQIMVVEGCLSVGIPLNALANPLFRDFLHHVGAKLPAGGHLSNHIPFIEKKEMNKILEEVGDSNYSVCFDGTPYRCE--GLVLAFV 585
G + LS+RD Q+ + GCLS GIPL+AL +P + F +P HL+ HIP + + E++ L E+GD NY+VCFD TPYRCE G+ L F+
Sbjct: 7 GWYGDTLSNRDKLLQVKLATGCLSAGIPLHALGDPQMKVFFDFANICMPGDSHLAKHIPVLLRTELDTALSELGDGNYTVCFDPTPYRCECFGIELRFI 105 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9552.23571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9552.23571.1 >prot_P-canaliculata_contig9552.23571.1 ID=prot_P-canaliculata_contig9552.23571.1|Name=mRNA_P-canaliculata_contig9552.23571.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=151bp MATHCNGDVHRQALAVFNRKKRSKQTTLALFRDYSKSLGGIHDSLLSDRDback to top mRNA from alignment at P-canaliculata_contig9552:875..2772+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9552.23571.1 ID=mRNA_P-canaliculata_contig9552.23571.1|Name=mRNA_P-canaliculata_contig9552.23571.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1898bp|location=Sequence derived from alignment at P-canaliculata_contig9552:875..2772+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9552:875..2772+ >mRNA_P-canaliculata_contig9552.23571.1 ID=mRNA_P-canaliculata_contig9552.23571.1|Name=mRNA_P-canaliculata_contig9552.23571.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at P-canaliculata_contig9552:875..2772+ (Pelvetia canaliculata dioecious)back to top |