mRNA_P-canaliculata_contig9539.23565.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9539.23565.1
Unique NamemRNA_P-canaliculata_contig9539.23565.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.690e-127
Identity = 187/255 (73.33%), Postives = 207/255 (81.18%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WATLMKLR+ALVERA EIYAR NPPA GESPIKGE L+  QLESVT EVF E GNMDQT +QHEMPVET LEK G KDARI+TG   KEKE FTLCLAV  D KKVPLR IFKGTP IPP  P KG+ TQPRK SIA E+LP NR+K G+P GGMSFGVQ+KSWCD R C LW+  SW LRPN+GS++KQRP ILVLDDFK H++  FIA+LK  +NTIVIFIPG LTPLLQPLDRMLNK+MK ++RG YT Y
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGG--KEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 1.110e-118
Identity = 183/255 (71.76%), Postives = 204/255 (80.00%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WAT+MKLR+ALV+RAGEIYAR +PPA  ESPIKGE L+  QL SV  EVFEE GNMDQT +QHE+PVET LEK G KDARISTG   KEKE FTL LAVMADGKKV  R+IFKGTPF PP    KG+ T PRK S+A EI P NR K GHPA GMSFGVQ+KSW D R C  W+S SWKLRPN+GSI++QRP ILVLDDFK H+++ FIA LK  +NTIVIFIPGRLTPLLQPLDRMLNKQMK ++R KYT Y
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGG--KEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 1.000e-117
Identity = 186/255 (72.94%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WATLMKLRKAL+ERAGEIYA+  PPA GESPI+GE LS +QLE VT E+FEE GNMDQT +QHEMPVET LE  G KDARI+TG   KEKE FTLCLAV ADGKKVPLR+IFKGTPF+PPATP KG+ TQPRK SIA E+LP NR+K G P GGMSFGVQ+KSWCD R C LW+ +SWKLRPN+GSI++QR  ILVLDDFK H++  FIA LK  +NTIVIFIPG L PL QPLDRMLNKQMK ++RG YT +
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGG--KEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 1.130e-117
Identity = 182/255 (71.37%), Postives = 203/255 (79.61%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WAT+MKLR+ALV RAGEIYAR +PPA  ESPIKGE L+  QL SV  EVF+E GNMDQT +QHEMPVET LEK G KDARISTG   KEKE FTL LAVMADGKKV  R+IFKGTPFIPPA   KG+ T PRK S+A EI P NR K  HPA GMSFGVQ+KSW D R C  W+S SWKLRPN+GSI++QRP ILVLDDFK H+++ +IA LK  +NTIVI IPG LTPLLQPLDRMLNKQMK ++RGKYT Y
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGG--KEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 1.920e-117
Identity = 183/279 (65.59%), Postives = 211/279 (75.63%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGY------------------------ERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WATLMKLRKAL+ERAGEIYA+  PPA GESPI+GE LS +QLE VT E+F++ GNMDQT +Q+EMPVET LEK G KDARI+TG                           KEKE FTLCLAV ADG KVPLR+IFKGTPF+PPATP KG+ TQPRK SIA E+LP NR+K G P GGMSFGVQ+KSWCD R   LW+ +SWKLRPN+GS+++QR  ILVLDDFK H++  FIA LK  +NTIVIFIPG LTPLLQPLDRMLNKQMK ++RG YT +
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 9.480e-115
Identity = 182/255 (71.37%), Postives = 204/255 (80.00%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            + +ATLMKLR AL+ERAGEIYAR NPPASGESPIKG+ LSPAQLESV TEVFEE GNMDQT +Q EMPVET LEK G KDARISTG   KEKE FTLCLAVMADG KVPLR+IFKG PFIPP+T  +G+ TQPRKGSIAAE+LP N+T FG+P  GMSFGVQ++SW DA  CTLW+SESW  RPN GS+IKQR SILVLDDF+              +NT VI IPG LTPLLQPLDRML+K+MK +MR +YT Y
Sbjct:  236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGG--KEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFR--------------TNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 6.530e-113
Identity = 175/250 (70.00%), Postives = 197/250 (78.80%), Query Frame = 1
Query:   16 LMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            +MKLR+ALV+RAGEIYAR +PPA  ESPIKGE L+  QL SV  EVFE+ GNMDQT +QHEMPVET LEK G KDAR+STG E  EKE FTL LAV ADGKKV LR+IF GTPFIPP    KG+ T PRK S+A E+ P NR K GHPA GMSFGVQ+KSW D R C  W S SWKLRPN+GSI++QRP ILVLDDFK H+++ FIA LK  +NTIVIFIPG LTPLLQPLDRMLNKQ K ++R KYT Y
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE--EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 1.090e-112
Identity = 175/255 (68.63%), Postives = 202/255 (79.22%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WATLMKLRKAL+ERAG+IYA+  PPA GE+PI+GE LS +QLE VT E+FEE GNMDQT +QHE PVE +  KR  +    S   ER     FTLCLAV ADGKKVPLR+IFKGTPF+PPATP KG+ TQPRK SIA E+LP NR+K G P GGMSFGVQ+KSWCD R C LW+ +SWKLRPN+GSI++QR  ILVLDDFK H++  FIA LK  +NTIVIFIPG LTPLLQPLDRMLNKQMK ++RG YT +
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVERLW-KRPVRRMPASPPEER-----FTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 435          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.130e-111
Identity = 177/255 (69.41%), Postives = 200/255 (78.43%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRGKYTTY 765
            M WAT+MKL +ALV+RAGEIYAR +PPA  ESPIKGE L+  QL SV  EVFEE GNMDQ  +QHEMPVET L+K G KDARISTG    EKE FTL LAV ADGKKV  R+IF+GTPFIPP    KG+ T+PRK  +A E+ P NR K GHPA GMSFGVQ+KSW D R C  W+S SWKLRPN+GSI++QRP ILVLDDFK H ++ FIA LK  +NTIVIFIPG LTPLLQPLDRMLNKQMK ++RGKYT Y
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGN-EKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 2.140e-111
Identity = 180/250 (72.00%), Postives = 205/250 (82.00%), Query Frame = 1
Query:    1 MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTEVFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLAVMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKFGHPAGGMSFGVQKKSWCDAR*CTLWVSESWKLRPNDGSIIKQRPSILVLDDFKYHREKYFIADLKGMSNTIVIFIPGRLTPLLQPLDRMLNKQMKWVMRG 750
            + +ATLMKLR AL+ERAGEIYAR NPPASGESPIKG+ L+PAQLESV  +VFEE GNMDQT +Q EMPVET LEKRG KDARISTG   KEK+ FT CLAVMADG KVP R+IFKG PFIPP+T  + + TQ RKG IAAE+L  NRTKFG+P  GM F VQ+KSWCDAR CTLW+SESW+ RPN GS+IKQR SILVLDDF+ HR + F+ DL+  +NT VI IPG LTPLLQPLDRMLNK+MK +MRG
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGG--KEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9539.23565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI1.690e-12773.33DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.110e-11871.76DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.000e-11772.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE1.130e-11771.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.920e-11765.59DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE9.480e-11571.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE6.530e-11370.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE1.090e-11268.63DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.130e-11169.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE2.140e-11172.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9539contigP-canaliculata_contig9539:9036..10007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.4e-63
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size765
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9539.23565.1prot_P-canaliculata_contig9539.23565.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9539 9288..10007 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817318.5587156-UTR-P-canaliculata_contig9539:9035..92871622817318.5587156-UTR-P-canaliculata_contig9539:9035..9287Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9539 9036..9287 -
1693495220.7323346-UTR-P-canaliculata_contig9539:9035..92871693495220.7323346-UTR-P-canaliculata_contig9539:9035..9287Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9539 9036..9287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817318.5703964-CDS-P-canaliculata_contig9539:9287..95351622817318.5703964-CDS-P-canaliculata_contig9539:9287..9535Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9539 9288..9535 -
1693495220.7457285-CDS-P-canaliculata_contig9539:9287..95351693495220.7457285-CDS-P-canaliculata_contig9539:9287..9535Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9539 9288..9535 -
1622817318.5810988-CDS-P-canaliculata_contig9539:9742..100071622817318.5810988-CDS-P-canaliculata_contig9539:9742..10007Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9539 9743..10007 -
1693495220.7575-CDS-P-canaliculata_contig9539:9742..100071693495220.7575-CDS-P-canaliculata_contig9539:9742..10007Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9539 9743..10007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9539.23565.1

>prot_P-canaliculata_contig9539.23565.1 ID=prot_P-canaliculata_contig9539.23565.1|Name=mRNA_P-canaliculata_contig9539.23565.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=171bp
MVWATLMKLRKALVERAGEIYARCNPPASGESPIKGEGLSPAQLESVTTE
VFEEHGNMDQTLIQHEMPVETILEKRGTKDARISTGYERKEKECFTLCLA
VMADGKKVPLRMIFKGTPFIPPATPEKGRQTQPRKGSIAAEILPMNRTKF
GHPAGGMSFGVQKKSWCDAR*
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mRNA from alignment at P-canaliculata_contig9539:9036..10007-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9539.23565.1 ID=mRNA_P-canaliculata_contig9539.23565.1|Name=mRNA_P-canaliculata_contig9539.23565.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at P-canaliculata_contig9539:9036..10007- (Pelvetia canaliculata dioecious)
ATGGTGTGGGCGACGTTGATGAAGCTGCGCAAGGCTCTCGTGGAGCGCGC TGGTGAGATCTACGCTCGGTGCAACCCACCTGCTTCTGGCGAGAGCCCCA TCAAAGGGGAGGGCCTGAGTCCCGCGCAGCTGGAGTCGGTGACCACGGAA GTGTTTGAAGAACACGGCAACATGGACCAGACGCTAATCCAGCACGAGAT GCCGGTGGAGACCATTCTGGAGAAGCGCGGTACGAAGGATGCTCGCATCA GCACAGGATATGAGAGTGTAACTTTGTTGAGGTTTTTTCCAATTACGTGT TGTACGGATTTGATGTTGTGCTGTTTTTTATATTTGTTGTGGACATATAT TTATTTCTGAGTAATACCATACTTCTACCGTCTGCACCCCCATCAACCAC ATAGTTGTTTCGCAGAAATATTGAAAACCCCTCTTATTTTCCCCTTCACG TCGTGTATCCTCCCCGCCCCAGGAAAAGAGAAGGAATGCTTCACGCTATG TCTTGCTGTCATGGCGGACGGCAAGAAGGTTCCGCTGCGCATGATCTTCA AGGGCACGCCGTTCATTCCGCCGGCCACTCCCGAGAAGGGCAGGCAAACT CAGCCGCGAAAGGGTTCCATCGCGGCAGAGATCCTTCCTATGAACCGCAC AAAGTTCGGGCACCCCGCGGGAGGCATGTCTTTCGGCGTGCAGAAGAAAA GCTGGTGTGACGCGCGATAGTGCACCCTTTGGGTCTCGGAGAGCTGGAAG CTCCGTCCTAACGACGGAAGCATAATCAAGCAGCGCCCAAGCATCTTGGT ATTGGACGACTTCAAGTACCACCGAGAAAAATATTTCATTGCCGACCTCA AGGGGATGTCGAACACCATCGTCATCTTTATCCCAGGTAGGTTGACTCCT CTCCTCCAACCGCTGGATCGCATGCTCAACAAGCAGATGAAGTGGGTGAT GCGGGGGAAGTACACCACCTAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9539:9036..10007-

>mRNA_P-canaliculata_contig9539.23565.1 ID=mRNA_P-canaliculata_contig9539.23565.1|Name=mRNA_P-canaliculata_contig9539.23565.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at P-canaliculata_contig9539:9036..10007- (Pelvetia canaliculata dioecious)
ATGGTGTGGGCGACGTTGATGAAGCTGCGCAAGGCTCTCGTGGAGCGCGC
TGGTGAGATCTACGCTCGGTGCAACCCACCTGCTTCTGGCGAGAGCCCCA
TCAAAGGGGAGGGCCTGAGTCCCGCGCAGCTGGAGTCGGTGACCACGGAA
GTGTTTGAAGAACACGGCAACATGGACCAGACGCTAATCCAGCACGAGAT
GCCGGTGGAGACCATTCTGGAGAAGCGCGGTACGAAGGATGCTCGCATCA
GCACAGGATATGAGAATGGTGTGGGCGACGTTGATGAAGCTGCGCAAGGC
TCTCGTGGAGCGCGCTGGTGAGATCTACGCTCGGTGCAACCCACCTGCTT
CTGGCGAGAGCCCCATCAAAGGGGAGGGCCTGAGTCCCGCGCAGCTGGAG
TCGGTGACCACGGAAGTGTTTGAAGAACACGGCAACATGGACCAGACGCT
AATCCAGCACGAGATGCCGGTGGAGACCATTCTGGAGAAGCGCGGTACGA
AGGATGCTCGCATCAGCACAGGATATGAGAGAAAAGAGAAGGAATGCTTC
ACGCTATGTCTTGCTGTCATGGCGGACGGCAAGAAGGTTCCGCTGCGCAT
GATCTTCAAGGGCACGCCGTTCATTCCGCCGGCCACTCCCGAGAAGGGCA
GGCAAACTCAGCCGCGAAAGGGTTCCATCGCGGCAGAGATCCTTCCTATG
AACCGCACAAAGTTCGGGCACCCCGCGGGAGGCATGTCTTTCGGCGTGCA
GAAGAAAAGCTGGTGTGACGCGCGATAGGAAAAGAGAAGGAATGCTTCAC
GCTATGTCTTGCTGTCATGGCGGACGGCAAGAAGGTTCCGCTGCGCATGA
TCTTCAAGGGCACGCCGTTCATTCCGCCGGCCACTCCCGAGAAGGGCAGG
CAAACTCAGCCGCGAAAGGGTTCCATCGCGGCAGAGATCCTTCCTATGAA
CCGCACAAAGTTCGGGCACCCCGCGGGAGGCATGTCTTTCGGCGTGCAGA
AGAAAAGCTGGTGTGACGCGCGATAG
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