mRNA_P-canaliculata_contig9488.23501.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9488.23501.1
Unique NamemRNA_P-canaliculata_contig9488.23501.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A6A7BJX2_9PLEO (Uncharacterized protein n=1 Tax=Plenodomus tracheiphilus IPT5 TaxID=1408161 RepID=A0A6A7BJX2_9PLEO)

HSP 1 Score: 65.5 bits (158), Expect = 5.820e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVERWRG 153
            RSLDP+FA+S+G+AAA  RI REE EKGR  QES EV+RRRW +    WRG
Sbjct:    9 RSLDPIFAISIGLAAAYTRINREEKEKGRSTQESIEVVRRRWDLA---WRG 56
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: M2SQ86_COCSN (Uncharacterized protein (Fragment) n=7 Tax=Bipolaris TaxID=33194 RepID=M2SQ86_COCSN)

HSP 1 Score: 65.1 bits (157), Expect = 6.060e-13
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVE 141
            R LDPLF +S+G+AAAA RI+REE EKGR V++S EVLRRRWG+ ++
Sbjct:    1 RRLDPLFTISIGLAAAATRIQREEREKGRDVRQSWEVLRRRWGIFLK 47
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A6A6HZ66_9PLEO (Uncharacterized protein n=1 Tax=Trematosphaeria pertusa TaxID=390896 RepID=A0A6A6HZ66_9PLEO)

HSP 1 Score: 62.8 bits (151), Expect = 6.020e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVE 141
            R LDPLFALS+G+ AAA RI REE EKGRG  E+ EV +RRW ++ E
Sbjct:    9 RRLDPLFALSIGVGAAATRINREEKEKGRGTAETVEVFKRRWNVMWE 55
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A6A6PFA1_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PFA1_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 6.130e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVER 144
            + LDP+FALSVGIAAAA+RI REE EKG   QES   LRRRW ++ ER
Sbjct:    9 KRLDPIFALSVGIAAAAVRINREEKEKGNTTQESVRSLRRRWDLLFER 56
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A3M7LXW3_9PLEO (Non-classical export 1 n=1 Tax=Pyrenophora seminiperda CCB06 TaxID=1302712 RepID=A0A3M7LXW3_9PLEO)

HSP 1 Score: 62.8 bits (151), Expect = 6.320e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVERWRG 153
            + LDPLFA+S+G+AAA  RI+REE EKGR + ES EV RRR G+   RW G
Sbjct:    9 KRLDPLFAISIGLAAALTRIKREEKEKGRNMAESMEVFRRRVGLAWGRWEG 59
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A6A6ABJ6_9PLEO (Uncharacterized protein n=1 Tax=Dothidotthia symphoricarpi CBS 119687 TaxID=1392245 RepID=A0A6A6ABJ6_9PLEO)

HSP 1 Score: 62.4 bits (150), Expect = 8.760e-12
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMV 135
            R+LDP+FA+S+G+AAAA RI REE E+GR  +ES +VL+RRWG+ 
Sbjct:    9 RALDPVFAISIGLAAAATRINREEKERGRSTEESLQVLKRRWGIA 53
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A6A5VWE6_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Bimuria novae-zelandiae CBS 107.79 TaxID=1447943 RepID=A0A6A5VWE6_9PLEO)

HSP 1 Score: 61.2 bits (147), Expect = 2.080e-11
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVERWRG 153
            R LDP+FA+S+G+AAAA RI REE EKGRGV E+ EV RRR+G+  E  +G
Sbjct:    1 RRLDPIFAISIGLAAAATRIHREEREKGRGVGETLEVARRRFGIWWEGGQG 51
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A178AY28_9PLEO (Uncharacterized protein n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=765868 RepID=A0A178AY28_9PLEO)

HSP 1 Score: 60.5 bits (145), Expect = 5.320e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVERWRG 153
            +SLDP+FA+S+G+AAAA RI REE EKGR   +S ++L+RRW +    W+G
Sbjct:    9 KSLDPIFAISIGLAAAATRINREEKEKGRSTAQSMDILKRRWNLA---WQG 56
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BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: R0IUP1_SETT2 (Uncharacterized protein n=1 Tax=Setosphaeria turcica (strain 28A) TaxID=671987 RepID=R0IUP1_SETT2)

HSP 1 Score: 60.5 bits (145), Expect = 5.320e-11
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMV 135
            + LDPLFA+S+G+AAAA RI REE EKGR  Q+S EVLRRR G+ 
Sbjct:    9 KRLDPLFAISIGLAAAATRINREEKEKGRSTQQSLEVLRRRCGLA 53
[Close]
BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Match: A0A1Y2LW53_EPING (Uncharacterized protein n=1 Tax=Epicoccum nigrum TaxID=105696 RepID=A0A1Y2LW53_EPING)

HSP 1 Score: 60.1 bits (144), Expect = 7.200e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMV 135
            ++LDPLFA+S+G+AAAA RI REE EKGR  QE+ +V +RRW + 
Sbjct:    6 KALDPLFAISIGLAAAATRINREEKEKGRSTQETIDVFKRRWALA 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9488.23501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7BJX2_9PLEO5.820e-1364.71Uncharacterized protein n=1 Tax=Plenodomus trachei... [more]
M2SQ86_COCSN6.060e-1365.96Uncharacterized protein (Fragment) n=7 Tax=Bipolar... [more]
A0A6A6HZ66_9PLEO6.020e-1263.83Uncharacterized protein n=1 Tax=Trematosphaeria pe... [more]
A0A6A6PFA1_9PEZI6.130e-1266.67Uncharacterized protein n=1 Tax=Neohortaea acidoph... [more]
A0A3M7LXW3_9PLEO6.320e-1260.78Non-classical export 1 n=1 Tax=Pyrenophora seminip... [more]
A0A6A6ABJ6_9PLEO8.760e-1262.22Uncharacterized protein n=1 Tax=Dothidotthia symph... [more]
A0A6A5VWE6_9PLEO2.080e-1162.75Uncharacterized protein (Fragment) n=1 Tax=Bimuria... [more]
A0A178AY28_9PLEO5.320e-1154.90Uncharacterized protein n=1 Tax=Stagonospora sp. S... [more]
R0IUP1_SETT25.320e-1166.67Uncharacterized protein n=1 Tax=Setosphaeria turci... [more]
A0A1Y2LW53_EPING7.200e-1160.00Uncharacterized protein n=1 Tax=Epicoccum nigrum T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9488contigP-canaliculata_contig9488:2260..2415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.3
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog5016.M2TLU5
EggNOG free text desc.Non-classical export protein 1
EggNOG OGs2E6JG@1,2SD8V@2759,3AC94@33154,3P98M@4751,3QZQ8@4890
COG Functional cat.S
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817314.4808125-CDS-P-canaliculata_contig9488:2259..24151622817314.4808125-CDS-P-canaliculata_contig9488:2259..2415Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9488 2260..2415 +
1693495218.4131544-CDS-P-canaliculata_contig9488:2259..24151693495218.4131544-CDS-P-canaliculata_contig9488:2259..2415Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9488 2260..2415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9488.23501.1prot_P-canaliculata_contig9488.23501.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9488 2260..2415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9488.23501.1

>prot_P-canaliculata_contig9488.23501.1 ID=prot_P-canaliculata_contig9488.23501.1|Name=mRNA_P-canaliculata_contig9488.23501.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=52bp
RSLDPLFALSVGIAAAAMRIRREEAEKGRGVQESTEVLRRRWGMVVERWR
G*
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mRNA from alignment at P-canaliculata_contig9488:2260..2415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9488.23501.1 ID=mRNA_P-canaliculata_contig9488.23501.1|Name=mRNA_P-canaliculata_contig9488.23501.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at P-canaliculata_contig9488:2260..2415+ (Pelvetia canaliculata dioecious)
AGATCTCTCGACCCTCTGTTCGCGCTGAGCGTGGGCATCGCGGCGGCGGC
GATGCGGATCCGTCGCGAGGAGGCGGAGAAGGGAAGAGGAGTGCAGGAGT
CGACGGAGGTGCTGCGACGACGGTGGGGAATGGTCGTGGAGCGGTGGCGG
GGGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9488:2260..2415+

>mRNA_P-canaliculata_contig9488.23501.1 ID=mRNA_P-canaliculata_contig9488.23501.1|Name=mRNA_P-canaliculata_contig9488.23501.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at P-canaliculata_contig9488:2260..2415+ (Pelvetia canaliculata dioecious)
AGATCTCTCGACCCTCTGTTCGCGCTGAGCGTGGGCATCGCGGCGGCGGC
GATGCGGATCCGTCGCGAGGAGGCGGAGAAGGGAAGAGGAGTGCAGGAGT
CGACGGAGGTGCTGCGACGACGGTGGGGAATGGTCGTGGAGCGGTGGCGG
GGGTAGAGATCTCTCGACCCTCTGTTCGCGCTGAGCGTGGGCATCGCGGC
GGCGGCGATGCGGATCCGTCGCGAGGAGGCGGAGAAGGGAAGAGGAGTGC
AGGAGTCGACGGAGGTGCTGCGACGACGGTGGGGAATGGTCGTGGAGCGG
TGGCGGGGGTAG
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