mRNA_P-canaliculata_contig939.23402.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig939.23402.1
Unique NamemRNA_P-canaliculata_contig939.23402.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: D7FLK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.900e-36
Identity = 83/155 (53.55%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 SVIVLEPDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPV-TTGSVKLEISDY---------SALPSFSGGRKFE--------------SVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            +V  L PD GP RGGT+V VSGVNF+ +S+LLCRFG +VT+AA FVS E++TCVSPAVPV   G V LE+SD          S+    S    FE              +V FTF ED+ VL AFP SGP+ GGTRV  TGSGF DV  LGCRFG
Sbjct: 6354 AVTALAPDSGPTRGGTVVTVSGVNFAGSSSLLCRFGDLVTSAAVFVSTEMVTCVSPAVPVGAAGRVYLEVSDLGSTTVTHDSSSSSVGSDTSSFEVREPGEDPSLWTNSAVEFTFTEDSVVLAAFPTSGPAEGGTRVTLTGSGFQDVPELGCRFG 6508          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A6H5JBB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB5_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.300e-33
Identity = 79/154 (51.30%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    4 VIVLEPDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPV-TTGSVKLEISDY---------------SALPSFSGGRKFE--------SVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            V  L PD GP RGGT+V VSGVNF+ ++ LLCRFG +VT+AA FVS E++TCVSPAVPV   G V L++SD                S  PSF      E        +V F F E+  VL AFP SGP+ GGTRV  TGSGF D+  LGCRFG
Sbjct: 6134 VTALAPDSGPTRGGTVVTVSGVNFAGSANLLCRFGDLVTSAAVFVSTEMVTCVSPAVPVGAAGRVYLDVSDPGSTTVTHDSSSSSVGSDTPSFEVREPGEDPSLWTNSAVEFMFTEEPVVLAAFPISGPAEGGTRVTLTGSGFQDLPELGCRFG 6287          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A0P1AY64_PLAHL (Proteins containing Ca2-binding EGF-like domains n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY64_PLAHL)

HSP 1 Score: 88.2 bits (217), Expect = 1.040e-17
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 VIVLEPDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPS--FSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRF 390
            V ++ P+ GP +GGT + V+G+NF N STL CRFG  VTTAA F ++   TCVSP+     G V +E++++  L S  F+  RK    +FT+  D  + T FP  GP++G   V   G  F    T  C+F
Sbjct: 6572 VFLITPNHGPLKGGTEIVVTGINFQNTSTLCCRFGDRVTTAAVFFNSTHFTCVSPS-GFEQGEVYMEVTNHGLLGSTIFTTSRK----VFTYDPDIRIDTLFPSLGPTTGNFSVRIMGGPFKLSDTGYCKF 6697          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A418B4Q4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B4Q4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.000e-15
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   19 PDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            P+ GP  GGT + V+G  F+N+STL CRFG VV +AA F ++  +TCVSP+V  +   V L++S  +     S      + +FT+     V    P  GP++G   V  +G  F + + L CRFG
Sbjct: 7805 PNHGPVLGGTEIIVTGDYFTNSSTLYCRFGTVVVSAATFFNSTTLTCVSPSVD-SPRQVLLDVSTNAKAAPSSSFSNTTTGVFTYDPPVVVKAITPSLGPATGNFSVEISGGPFPNTKELRCRFG 7928          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A024UNT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNT2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.780e-14
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   19 PDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            P+ GP  GGT + V+G  F+N+STL CRFG VV +AA F ++  +TCVSP+V  +   V +++S  +     S      + +FT+     V    P  GP++G   V  +G  F + + L CRFG
Sbjct: 9522 PNHGPVLGGTEIIVTGDYFTNSSTLYCRFGTVVVSAATFFNSTTLTCVSPSVD-SPRQVLVDVSTNAKAAPSSSFSNTTTGVFTYDPPVVVKAITPSLGPATGNFSVEISGGPFPNTKELRCRFG 9645          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: F0Y8I2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8I2_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 1.550e-13
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   13 LEPDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTG-SVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            LEP  GPA GGT+V VSG+N  +++ L CRFGA+    A +VS+    CV+PA       +V+L ++D             +++ F +    ++  A P SGP++GGT V   GSGF     L CRFG
Sbjct: 1174 LEPASGPAAGGTVVAVSGLNIPDSTDLRCRFGAL-DVDARWVSSTEAECVAPAAAAPGAVAVRLGVADQQM--------SADALEFVYAAALDLAAASPLSGPANGGTVVAIEGSGFRFSTLLHCRFG 1292          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A418BPR6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BPR6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.780e-12
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   19 PDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            P+ GP  GGT V V G  F+N+STL CRFG  V +AA + ++  +TCVSP+V  +   V +++S  S   S+S      +  FT+     + +  P  GP++G   V   G  F     L CRFG
Sbjct:  922 PNHGPVFGGTEVVVYGDYFTNSSTLYCRFGTTVVSAATYFNSTTLTCVSPSVQ-SPRQVFIDVSTNSKRSSYSNTT---TAAFTYDAPVSLKSVTPTLGPATGNFSVEIYGGPFPRTDELRCRFG 1042          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A397BGZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BGZ3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.810e-12
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   19 PDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            P+ GP  GGT V V G  F+N+STL CRFG  V +AA + ++  +TCVSP+V  +   V +++S  S   S+S      +  FT+     + +  P  GP++G   V   G  F     L CRFG
Sbjct: 1475 PNHGPVFGGTEVVVYGDYFTNSSTLYCRFGTTVVSAATYFNSTTLTCVSPSVQ-SPRQVFIDVSTNSKRSSYSNTT---TAAFTYDAPVSLKSVTPTLGPATGNFSVEIYGGPFPRTDELRCRFG 1595          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A3R7B962_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B962_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.850e-12
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   19 PDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            P+ GP  GGT V V G  F+N+STL CRFG  V +AA + ++  +TCVSP+V  +   V +++S  S   S+S      +  FT+     + +  P  GP++G   V   G  F     L CRFG
Sbjct: 5791 PNHGPVFGGTEVVVYGDYFTNSSTLYCRFGTTVVSAATYFNSTTLTCVSPSVQ-SPRQVFIDVSTNSKRSSYSNTT---TAAFTYDAPVSLKSVTPTLGPATGNFSVEIYGGPFPRTDELRCRFG 5911          
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Match: A0A397FJ67_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FJ67_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.860e-12
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   19 PDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAELITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTAFPESGPSSGGTRVIFTGSGFYDVQTLGCRFG 393
            P+ GP  GGT V V G  F+N+STL CRFG  V +AA + ++  +TCVSP+V  +   V +++S  S   S+S      +  FT+     + +  P  GP++G   V   G  F     L CRFG
Sbjct: 9550 PNHGPVFGGTEVVVYGDYFTNSSTLYCRFGTTVVSAATYFNSTTLTCVSPSVQ-SPRQVFIDVSTNSKRSSYSNTT---TAAFTYDAPVSLKSVTPTLGPATGNFSVEIYGGPFPRTDELRCRFG 9670          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig939.23402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK0_ECTSI4.900e-3653.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBB5_9PHAE3.300e-3351.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1AY64_PLAHL1.040e-1740.46Proteins containing Ca2-binding EGF-like domains n... [more]
A0A418B4Q4_9STRA7.000e-1537.60Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UNT2_9STRA1.780e-1436.80Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
F0Y8I2_AURAN1.550e-1338.28Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A418BPR6_9STRA1.780e-1236.80Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397BGZ3_9STRA1.810e-1236.80Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7B962_9STRA1.850e-1236.80Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397FJ67_9STRA1.860e-1236.80Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig939contigP-canaliculata_contig939:4198..4635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.1e-31
Seed eggNOG ortholog2880.D7FLK0
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-17_000900.1
Exons2
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.0064194-CDS-P-canaliculata_contig939:4197..43321622817307.0064194-CDS-P-canaliculata_contig939:4197..4332Pelvetia canaliculata dioeciousCDSP-canaliculata_contig939 4198..4332 -
1693495213.224897-CDS-P-canaliculata_contig939:4197..43321693495213.224897-CDS-P-canaliculata_contig939:4197..4332Pelvetia canaliculata dioeciousCDSP-canaliculata_contig939 4198..4332 -
1622817307.0189943-CDS-P-canaliculata_contig939:4377..46351622817307.0189943-CDS-P-canaliculata_contig939:4377..4635Pelvetia canaliculata dioeciousCDSP-canaliculata_contig939 4378..4635 -
1693495213.2379525-CDS-P-canaliculata_contig939:4377..46351693495213.2379525-CDS-P-canaliculata_contig939:4377..4635Pelvetia canaliculata dioeciousCDSP-canaliculata_contig939 4378..4635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig939.23402.1prot_P-canaliculata_contig939.23402.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig939 4198..4635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig939.23402.1

>prot_P-canaliculata_contig939.23402.1 ID=prot_P-canaliculata_contig939.23402.1|Name=mRNA_P-canaliculata_contig939.23402.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=131bp
SVIVLEPDQGPARGGTIVKVSGVNFSNASTLLCRFGAVVTTAAEFVSAEL
ITCVSPAVPVTTGSVKLEISDYSALPSFSGGRKFESVIFTFREDAEVLTA
FPESGPSSGGTRVIFTGSGFYDVQTLGCRFG
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mRNA from alignment at P-canaliculata_contig939:4198..4635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig939.23402.1 ID=mRNA_P-canaliculata_contig939.23402.1|Name=mRNA_P-canaliculata_contig939.23402.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig939:4198..4635- (Pelvetia canaliculata dioecious)
TCCGTGATCGTCCTAGAGCCGGATCAAGGCCCAGCGCGGGGCGGCACGAT TGTGAAGGTCTCTGGTGTCAACTTTTCGAACGCTTCCACGCTGCTCTGCC GTTTTGGTGCCGTCGTGACAACAGCCGCGGAGTTCGTTTCGGCTGAGTTG ATCACCTGTGTCTCTCCGGCTGTTCCCGTCACCACGGGCAGTGTAAAACT TGAAATTTCTGACTACAGCGCGCTTCCTTCGTTCTCCGGAGGCAGGAAGT TCGAGTCTGTAACGTATACGGGCACCGACCCAGCGCTTTGGAGTGAAAGC GAGGTTATATTTACTTTCAGAGAAGACGCGGAGGTCCTTACCGCGTTTCC TGAATCTGGTCCGTCTTCTGGTGGAACGCGGGTGATTTTCACCGGATCCG GTTTCTACGACGTACAGACCCTAGGATGTCGTTTCGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig939:4198..4635-

>mRNA_P-canaliculata_contig939.23402.1 ID=mRNA_P-canaliculata_contig939.23402.1|Name=mRNA_P-canaliculata_contig939.23402.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig939:4198..4635- (Pelvetia canaliculata dioecious)
TCCGTGATCGTCCTAGAGCCGGATCAAGGCCCAGCGCGGGGCGGCACGAT
TGTGAAGGTCTCTGGTGTCAACTTTTCGAACGCTTCCACGCTGCTCTGCC
GTTTTGGTGCCGTCGTGACAACAGCCGCGGAGTTCGTTTCGGCTGAGTTG
ATCACCTGTGTCTCTCCGGCTGTTCCCGTCACCACGGGCAGTGTAAAACT
TGAAATTTCTGACTACAGCGCGCTTCCTTCGTTCTCCGGAGGCAGGAAGT
TCGAGTCTTCCGTGATCGTCCTAGAGCCGGATCAAGGCCCAGCGCGGGGC
GGCACGATTGTGAAGGTCTCTGGTGTCAACTTTTCGAACGCTTCCACGCT
GCTCTGCCGTTTTGGTGCCGTCGTGACAACAGCCGCGGAGTTCGTTTCGG
CTGAGTTGATCACCTGTGTCTCTCCGGCTGTTCCCGTCACCACGGGCAGT
GTAAAACTTGAAATTTCTGACTACAGCGCGCTTCCTTCGTTCTCCGGAGG
CAGGAAGTTCGAGTCTGTTATATTTACTTTCAGAGAAGACGCGGAGGTCC
TTACCGCGTTTCCTGAATCTGGTCCGTCTTCTGGTGGAACGCGGGTGATT
TTCACCGGATCCGGTTTCTACGACGTACAGACCCTAGGATGTCGTTTCGG
CGTTATATTTACTTTCAGAGAAGACGCGGAGGTCCTTACCGCGTTTCCTG
AATCTGGTCCGTCTTCTGGTGGAACGCGGGTGATTTTCACCGGATCCGGT
TTCTACGACGTACAGACCCTAGGATGTCGTTTCGGC
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