mRNA_P-canaliculata_contig93744.23378.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig93744.23378.1
Unique NamemRNA_P-canaliculata_contig93744.23378.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93744.23378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93744contigP-canaliculata_contig93744:551..1112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size543
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817305.0586271-UTR-P-canaliculata_contig93744:550..5691622817305.0586271-UTR-P-canaliculata_contig93744:550..569Pelvetia canaliculata dioeciousUTRP-canaliculata_contig93744 551..569 +
1693495211.821385-UTR-P-canaliculata_contig93744:550..5691693495211.821385-UTR-P-canaliculata_contig93744:550..569Pelvetia canaliculata dioeciousUTRP-canaliculata_contig93744 551..569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817305.070773-CDS-P-canaliculata_contig93744:569..11121622817305.070773-CDS-P-canaliculata_contig93744:569..1112Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93744 570..1112 +
1693495211.8314915-CDS-P-canaliculata_contig93744:569..11121693495211.8314915-CDS-P-canaliculata_contig93744:569..1112Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93744 570..1112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93744.23378.1prot_P-canaliculata_contig93744.23378.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig93744 570..1112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig93744.23378.1

>prot_P-canaliculata_contig93744.23378.1 ID=prot_P-canaliculata_contig93744.23378.1|Name=mRNA_P-canaliculata_contig93744.23378.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=181bp
MAARRSPQGSGPRAGASNPQTPAPAYSDRLSQLEKDVAEIRDCTIKEVLE
KLHRLGYEIQEVNSRFETDRRTGDSLEDLRVKVDDFGDEMRNLRRQVERG
SAPLPPPNQHAGTFPIPTYSGERSSLSRFLKQFYTWALSSHAEDALNQTL
PVIMTGDQSRRELEREYGKQIVAQSLTVWTG
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mRNA from alignment at P-canaliculata_contig93744:551..1112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig93744.23378.1 ID=mRNA_P-canaliculata_contig93744.23378.1|Name=mRNA_P-canaliculata_contig93744.23378.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=562bp|location=Sequence derived from alignment at P-canaliculata_contig93744:551..1112+ (Pelvetia canaliculata dioecious)
CAAGAAAATTCGATTTCAAATGGCTGCAAGGCGATCGCCGCAAGGTTCGG
GCCCTAGGGCAGGAGCCTCGAACCCCCAAACACCAGCCCCAGCATATAGC
GATAGGTTGTCGCAGCTGGAAAAGGATGTGGCCGAGATCAGGGACTGCAC
GATAAAGGAAGTGCTGGAGAAGCTTCATCGCCTGGGCTATGAGATTCAAG
AAGTGAACTCCAGGTTTGAAACTGATCGTCGTACAGGCGACTCGCTTGAA
GACTTAAGGGTAAAAGTGGACGATTTTGGAGATGAGATGAGAAATTTGAG
GAGACAAGTCGAGCGAGGCTCGGCACCATTGCCCCCACCGAACCAGCACG
CGGGAACTTTCCCGATCCCCACGTACTCTGGGGAACGCAGCAGCCTATCT
AGGTTCTTGAAACAGTTTTACACATGGGCTCTATCGTCCCACGCGGAGGA
TGCGTTGAATCAAACCCTCCCCGTGATTATGACTGGTGACCAATCACGTA
GGGAATTGGAAAGAGAGTATGGTAAGCAGATCGTGGCTCAATCACTTACC
GTGTGGACCGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig93744:551..1112+

>mRNA_P-canaliculata_contig93744.23378.1 ID=mRNA_P-canaliculata_contig93744.23378.1|Name=mRNA_P-canaliculata_contig93744.23378.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at P-canaliculata_contig93744:551..1112+ (Pelvetia canaliculata dioecious)
ATGGCTGCAAGGCGATCGCCGCAAGGTTCGGGCCCTAGGGCAGGAGCCTC
GAACCCCCAAACACCAGCCCCAGCATATAGCGATAGGTTGTCGCAGCTGG
AAAAGGATGTGGCCGAGATCAGGGACTGCACGATAAAGGAAGTGCTGGAG
AAGCTTCATCGCCTGGGCTATGAGATTCAAGAAGTGAACTCCAGGTTTGA
AACTGATCGTCGTACAGGCGACTCGCTTGAAGACTTAAGGGTAAAAGTGG
ACGATTTTGGAGATGAGATGAGAAATTTGAGGAGACAAGTCGAGCGAGGC
TCGGCACCATTGCCCCCACCGAACCAGCACGCGGGAACTTTCCCGATCCC
CACGTACTCTGGGGAACGCAGCAGCCTATCTAGGTTCTTGAAACAGTTTT
ACACATGGGCTCTATCGTCCCACGCGGAGGATGCGTTGAATCAAACCCTC
CCCGTGATTATGACTGGTGACCAATCACGTAGGGAATTGGAAAGAGAGTA
TGGTAAGCAGATCGTGGCTCAATCACTTACCGTGTGGACCGGCATGGCTG
CAAGGCGATCGCCGCAAGGTTCGGGCCCTAGGGCAGGAGCCTCGAACCCC
CAAACACCAGCCCCAGCATATAGCGATAGGTTGTCGCAGCTGGAAAAGGA
TGTGGCCGAGATCAGGGACTGCACGATAAAGGAAGTGCTGGAGAAGCTTC
ATCGCCTGGGCTATGAGATTCAAGAAGTGAACTCCAGGTTTGAAACTGAT
CGTCGTACAGGCGACTCGCTTGAAGACTTAAGGGTAAAAGTGGACGATTT
TGGAGATGAGATGAGAAATTTGAGGAGACAAGTCGAGCGAGGCTCGGCAC
CATTGCCCCCACCGAACCAGCACGCGGGAACTTTCCCGATCCCCACGTAC
TCTGGGGAACGCAGCAGCCTATCTAGGTTCTTGAAACAGTTTTACACATG
GGCTCTATCGTCCCACGCGGAGGATGCGTTGAATCAAACCCTCCCCGTGA
TTATGACTGGTGACCAATCACGTAGGGAATTGGAAAGAGAGTATGGTAAG
CAGATCGTGGCTCAATCACTTACCGTGTGGACCGGC
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