mRNA_P-canaliculata_contig937.23373.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig937.23373.1
Unique NamemRNA_P-canaliculata_contig937.23373.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig937.23373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig937contigP-canaliculata_contig937:14624..15279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size623
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig937.23373.1prot_P-canaliculata_contig937.23373.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig937 14829..15200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.6568513-UTR-P-canaliculata_contig937:14623..148281622817304.6568513-UTR-P-canaliculata_contig937:14623..14828Pelvetia canaliculata dioeciousUTRP-canaliculata_contig937 14624..14828 +
1693495211.5285227-UTR-P-canaliculata_contig937:14623..148281693495211.5285227-UTR-P-canaliculata_contig937:14623..14828Pelvetia canaliculata dioeciousUTRP-canaliculata_contig937 14624..14828 +
1622817304.7011404-UTR-P-canaliculata_contig937:15200..152791622817304.7011404-UTR-P-canaliculata_contig937:15200..15279Pelvetia canaliculata dioeciousUTRP-canaliculata_contig937 15201..15279 +
1693495211.5648317-UTR-P-canaliculata_contig937:15200..152791693495211.5648317-UTR-P-canaliculata_contig937:15200..15279Pelvetia canaliculata dioeciousUTRP-canaliculata_contig937 15201..15279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.6687388-CDS-P-canaliculata_contig937:14828..149111622817304.6687388-CDS-P-canaliculata_contig937:14828..14911Pelvetia canaliculata dioeciousCDSP-canaliculata_contig937 14829..14911 +
1693495211.5432906-CDS-P-canaliculata_contig937:14828..149111693495211.5432906-CDS-P-canaliculata_contig937:14828..14911Pelvetia canaliculata dioeciousCDSP-canaliculata_contig937 14829..14911 +
1622817304.683822-CDS-P-canaliculata_contig937:14944..152001622817304.683822-CDS-P-canaliculata_contig937:14944..15200Pelvetia canaliculata dioeciousCDSP-canaliculata_contig937 14945..15200 +
1693495211.5538502-CDS-P-canaliculata_contig937:14944..152001693495211.5538502-CDS-P-canaliculata_contig937:14944..15200Pelvetia canaliculata dioeciousCDSP-canaliculata_contig937 14945..15200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig937.23373.1

>prot_P-canaliculata_contig937.23373.1 ID=prot_P-canaliculata_contig937.23373.1|Name=mRNA_P-canaliculata_contig937.23373.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=113bp
MNVGATQSSSTRFLLSLPPPTHSTQKKHCATGIRGAWSPLHPYAAAVRPD
RATLPRISWSLSVGWGIHSMPVTKDVEVWSSTPTKRPYRAGPQRGSVGEA
TSSTSSGSAPRI*
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mRNA from alignment at P-canaliculata_contig937:14624..15279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig937.23373.1 ID=mRNA_P-canaliculata_contig937.23373.1|Name=mRNA_P-canaliculata_contig937.23373.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=656bp|location=Sequence derived from alignment at P-canaliculata_contig937:14624..15279+ (Pelvetia canaliculata dioecious)
GACGACGATTTGATGGAGGAACACGGGTCTGATTGTGTTCAACGCGGAGT
TGTTTCTGGACAGGGCTTTTGTCAGCGATGGGGACGGCGTGCACGTTCTT
CTCCGGCGGAGGAAGCATCGTGTGGCAGGCGAGAATCCGCGTCCATTATG
CAAGCTTTTGATCTACGGTATCACGCAGGCATCATGCGGCCGGACGATTA
ACGCGATGAACGTTGGGGCCACCCAATCCTCCTCAACGCGATTCCTCTTG
TCCTTGCCTCCTCCGACGCACTCTACGCAAAAAAAGCAGTCCCGAAGAAC
GTGTCTGCCTGAAGAGGGAAGCTGTGCGACAGGCATCCGAGGTGCTTGGT
CTCCGTTACATCCCTACGCCGCCGCGGTACGCCCCGACCGCGCGACTCTC
CCGCGCATTTCATGGTCGCTATCGGTCGGGTGGGGGATTCATTCGATGCC
CGTCACCAAGGATGTTGAGGTTTGGTCATCAACTCCGACGAAGCGTCCCT
ACAGAGCTGGGCCGCAGCGCGGAAGCGTTGGCGAAGCTACCTCGTCTACC
TCGTCGGGCTCTGCGCCACGAATCTAGCGGTGATGGCCCCCGCACCTCAA
GCACGGGGCGGCAGTGTCCAGCCGCGCAAGGGAACGTCCACGTCGATACC
CCGAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig937:14624..15279+

>mRNA_P-canaliculata_contig937.23373.1 ID=mRNA_P-canaliculata_contig937.23373.1|Name=mRNA_P-canaliculata_contig937.23373.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at P-canaliculata_contig937:14624..15279+ (Pelvetia canaliculata dioecious)
ATGAACGTTGGGGCCACCCAATCCTCCTCAACGCGATTCCTCTTGTCCTT
GCCTCCTCCGACGCACTCTACGCAAAAAAAGCAATGAACGTTGGGGCCAC
CCAATCCTCCTCAACGCGATTCCTCTTGTCCTTGCCTCCTCCGACGCACT
CTACGCAAAAAAAGCACTGTGCGACAGGCATCCGAGGTGCTTGGTCTCCG
TTACATCCCTACGCCGCCGCGGTACGCCCCGACCGCGCGACTCTCCCGCG
CATTTCATGGTCGCTATCGGTCGGGTGGGGGATTCATTCGATGCCCGTCA
CCAAGGATGTTGAGGTTTGGTCATCAACTCCGACGAAGCGTCCCTACAGA
GCTGGGCCGCAGCGCGGAAGCGTTGGCGAAGCTACCTCGTCTACCTCGTC
GGGCTCTGCGCCACGAATCTAGCTGTGCGACAGGCATCCGAGGTGCTTGG
TCTCCGTTACATCCCTACGCCGCCGCGGTACGCCCCGACCGCGCGACTCT
CCCGCGCATTTCATGGTCGCTATCGGTCGGGTGGGGGATTCATTCGATGC
CCGTCACCAAGGATGTTGAGGTTTGGTCATCAACTCCGACGAAGCGTCCC
TACAGAGCTGGGCCGCAGCGCGGAAGCGTTGGCGAAGCTACCTCGTCTAC
CTCGTCGGGCTCTGCGCCACGAATCTAG
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