mRNA_P-canaliculata_contig9362.23368.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9362.23368.1
Unique NamemRNA_P-canaliculata_contig9362.23368.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: D7G4N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N4_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 2.530e-143
Identity = 248/469 (52.88%), Postives = 304/469 (64.82%), Query Frame = 2 
Query:  692 CTSKVEEH--GACDSAGASGVSAGPRDRVERKDTQKKKRGKKRQSSSRGDDDCV----DEAKDDVHVDREETVEGIVHEGAMYLVDSRKRVFSSERDERGEPVQVGVLDEHRGLVLHASPSKDVVAFAAAAVTATIGATAVGDTRNSTQRTALKSEKKPXXXXXXXXXXXRRVESGEANAGGTVGATDAD----GEPEDGVRRTTGGKYSAPVDKPSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRLGDAAMTSKVLKSSQAAMQRSERGPERCCIARTPSQIPYKMMDSNDPRRKKARDRKRSIERIRKKKSAWV 2068
            CTSKV E+  G  D  G +G          +++T+ KK+ ++ + S R D D V    DE     + +    +EGIVH+GAMYLVD+R+RVFS++RDE+G  V+VG  D+  G V+       ++                          A      P              E+G   A              G  ED V  + G +        S VV+YPFEVEECDHCETSERAY+DI+PLL ALA ELGK PEDL IYDPYYCQGSTV RLA+LGFPRV+NRKE+FYE+  N  +P+HDV+VTNPPFSG+H+ KIL+FCAR+ AKPWFLLLPN++YLKDYYEPSL   SG G   PFYLTPPKRYM+YSPQGSRL +KSSERKTSPFNTFWYI LGD A+TSK+L+S  AA ++ +    RCC+ART  QIPYKMMDSNDPRRKKARDR+RSI+RIRKKK+ W+
Sbjct:   97 CTSKVAEYSAGTSDDKGTAGTPV-------KRETKSKKKKRRDKGSLRHDQDHVPPSADEETSPDNDNESPVLEGIVHDGAMYLVDARRRVFSAQRDEQGGLVEVGTFDDKGGKVI-------MIXXXXXXXXXXXXXXXXXXXXXXXXXXAGLISSPPSALHRDPATKTDATEAGNGKAKXXXXXXXXXXXXAGSSED-VAASVGAEAE------SVVVEYPFEVEECDHCETSERAYSDISPLLSALAAELGKPPEDLVIYDPYYCQGSTVGRLASLGFPRVHNRKEDFYEVVKNGNIPQHDVVVTNPPFSGEHMPKILKFCARQGAKPWFLLLPNYVYLKDYYEPSLGRRSGQGATRPFYLTPPKRYMYYSPQGSRLKVKSSERKTSPFNTFWYIHLGDCAVTSKILQSYDAASRKLDINA-RCCVARTTQQIPYKMMDSNDPRRKKARDRQRSIDRIRKKKNEWI 543
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BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A835YHP0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHP0_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.990e-67
Identity = 129/264 (48.86%), Postives = 162/264 (61.36%), Query Frame = 2 
Query: 1319 VDYPFEVEECDHCETSE--------------------RAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRLGDAAMTSKVLKSSQAAMQRSERGPERCCIARTPSQIPYKMMDSNDPRRKKARDRKRSIERIRK 2050
            VDYPF+V++ +HCETS                      AYA I PLL ALA   GK    L IYDPYYCQGS V     LGFPRV+N KE+FY +    +VP+HD LVTNPP+SGDHV ++LR C     +PW LLLPN++Y K++Y   LT+ S   +    ++TPPKRY +Y         +SSERKTSPF TFWYI LG    T   L + QAA  R     ERCC+AR  S +PY+ MDS+DP RK+ RDR+RS +R++K
Sbjct:   96 VDYPFDVDQDNHCETSXXXXXXXXXXXXXXXXXXXXAEAYAHIAPLLEALAAAKGKPKAKLRIYDPYYCQGSVVANFVALGFPRVHNVKEDFYRVIEEGRVPKHDALVTNPPYSGDHVERLLRHCVS-SKRPWLLLLPNYVYTKEFYR-QLTAASKTAV----FITPPKRYHYYR--------QSSERKTSPFITFWYIDLGPKH-TQAALAAWQAAQARLPES-ERCCLARAASALPYRCMDSSDPLRKRERDRRRSKQRLQK 343
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A7S3XRY6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRY6_HETAK)

HSP 1 Score: 220 bits (560), Expect = 1.090e-62
Identity = 112/242 (46.28%), Postives = 153/242 (63.22%), Query Frame = 2 
Query: 1298 VDKPSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRL-GDAAMTSKVLKSSQAAMQRSERGPERCCIARTPSQIPYKMMDSNDPRRKKARD 2020
             DKP  V +YP+ V+E DHCET E AY DI  +L  +A +L K  + L IYDPY+CQG  ++    LGF  VYN+ E+FYE   +   P+ DVLVTNPP+SGDH+ +IL+FC     KPWFLL+PN++Y+K+YY  +LT         P Y+TP KRY +YSP+ SR ++KSSERKTSPF +FWY  L       + V  ++Q   +    G     +AR P Q+P + +D NDP +++ RD
Sbjct:   44 ADKPQ-VFEYPYAVDEDDHCETCEEAYEDIATILEHIAEDLNKPKKCLQIYDPYFCQGLVIKSFEKLGFSSVYNKLEDFYEKVDSKSTPDFDVLVTNPPYSGDHIERILKFCIA-SKKPWFLLVPNWVYMKEYYM-NLTKN-----IKPIYITPAKRYSYYSPRVSRTNVKSSERKTSPFPSFWYADLTARHGRAAAVFLANQTPTRGGGEGGG-AHLARGPRQLPERYLDQNDPAKRRLRD 276
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A7S4D5V1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5V1_HETAK)

HSP 1 Score: 220 bits (560), Expect = 9.640e-62
Identity = 112/242 (46.28%), Postives = 153/242 (63.22%), Query Frame = 2 
Query: 1298 VDKPSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRL-GDAAMTSKVLKSSQAAMQRSERGPERCCIARTPSQIPYKMMDSNDPRRKKARD 2020
             DKP  V +YP+ V+E DHCET E AY DI  +L  +A +L K  + L IYDPY+CQG  ++    LGF  VYN+ E+FYE   +   P+ DVLVTNPP+SGDH+ +IL+FC     KPWFLL+PN++Y+K+YY  +LT         P Y+TP KRY +YSP+ SR ++KSSERKTSPF +FWY  L       + V  ++Q   +    G     +AR P Q+P + +D NDP +++ RD
Sbjct:  119 ADKPQ-VFEYPYAVDEDDHCETCEEAYEDIATILEHIAEDLNKPKKCLQIYDPYFCQGLVIKSFEKLGFSSVYNKLEDFYEKVDSKSTPDFDVLVTNPPYSGDHIERILKFCIA-SKKPWFLLVPNWVYMKEYYM-NLTKN-----IKPIYITPAKRYSYYSPRVSRTNVKSSERKTSPFPSFWYADLTARHGRAAAVFLANQTPTRGGGEGGG-AHLARGPRQLPERYLDQNDPAKRRLRD 351
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A7S3GZA9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZA9_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.980e-51
Identity = 99/214 (46.26%), Postives = 137/214 (64.02%), Query Frame = 2 
Query: 1289 SAPVDKPSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDA-KPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPP--KRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRLGDAAMTSKVLKSSQAAMQRS 1921
            +APV  P+N  DYP+ V   DHCE+   AY DI   L  +A  LGK  E L I+DPY+C+GS  ERLA +GFP V N K +FYE    + VP++DVL+TNPP+SG H+ ++L++C   +  +PWFLLLPN++Y KDYY P      GG  + PFY+TP   +RY++ +P+G R +   S + TSPF TFWY ++ +    +K    SQAA  R+
Sbjct:   27 TAPV-APAN--DYPYPVVPDDHCESPMEAYQDIEHFLVVIAKSLGKTKESLRIFDPYFCEGSMKERLAAIGFPNVTNEKRDFYESITTNTVPDYDVLITNPPYSGTHMERLLQYCNENNGTRPWFLLLPNYVYTKDYYAPIFERNKGG--SKPFYVTPANGRRYLYTTPKGRRQE--KSGKFTSPFPTFWYCQIHE----NKDTLLSQAAAHRA 229
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A7S0QTD9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTD9_9CRYP)

HSP 1 Score: 187 bits (475), Expect = 6.220e-51
Identity = 92/182 (50.55%), Postives = 121/182 (66.48%), Query Frame = 2 
Query: 1325 YPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPP-KRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRLGD 1867
            + FE ++ DHCETSE AY DI+  L  LA  LGK P+DLAIYDPYYC G+ V+ LA  GF  VYN+ E+FY      +VP +DV VTNPP+SGDH+ ++L+FC    +KP+F L+PN++Y K YY+P LT +       PFYL P  +RY F++P G R      E+KTSPF +FWY   G+
Sbjct:   21 HTFETDKDDHCETSEEAYDDISVFLCRLASILGKTPKDLAIYDPYYCNGAVVKHLAARGFGNVYNKNEDFYRTIAEGRVPHYDVCVTNPPYSGDHIERMLKFCVE-SSKPFFCLVPNYVYSKPYYDP-LTEK-----CRPFYLIPENRRYEFWTPGGFRKQ-SLREKKTSPFISFWYCHAGE 194
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: L1JYH6_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYH6_GUITC)

HSP 1 Score: 182 bits (462), Expect = 2.500e-50
Identity = 86/175 (49.14%), Postives = 110/175 (62.86%), Query Frame = 2 
Query: 1331 FEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYI 1855
            F VE  DHCET   AY DI P+L A+A  +GK  ++L IYDPYYC G   + L   GF  VYN+ E+FYE       P  DVLVTNPP+S DH+ ++  FC+  + KPW +L+PN++Y KDYYE  L S        PFY+ PP RY + SP G+R    S E+KTSPF +FW+I
Sbjct:    1 FSVEHQDHCETPGEAYDDIVPVLLAIASNIGKRADELMIYDPYYCNGLVAQNLRDRGFQHVYNKNEDFYEAVKQGTTPPFDVLVTNPPYSNDHIERLFSFCSSCE-KPWMVLVPNYVYTKDYYEKMLKSG-----VRPFYVIPPNRYEYISPAGAR---GSREKKTSPFVSFWFI 166
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A7S0D9T2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D9T2_MICPS)

HSP 1 Score: 182 bits (463), Expect = 5.040e-49
Identity = 92/184 (50.00%), Postives = 117/184 (63.59%), Query Frame = 2 
Query: 1322 DYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSL-TSESG---GGLALPFYLTPP--KRYMFYSPQGSRLDIKSSERKTSPFNTFWYI 1855
            D+PFEV+  DHCET   AY D+ P L  +A  L K  E L IYDPY+C+GS  + LA LGF  VYN  E+FY++   ++VP HDVL+TNPP+SGDH  KIL FC R + KPW LLLPNF+  K YY+PSL  SE G   G    P +L P   K Y +++P   R   +   + T+PF TFWY+
Sbjct:   22 DHPFEVDAADHCETPFAAYQDVEPFLFRVALALRKPKEKLRIYDPYFCEGSVAKHLARLGFTNVYNENEDFYKVIEQNRVPPHDVLLTNPPYSGDHFRKILEFCGRSE-KPWLLLLPNFVCRKTYYQPSLGLSEDGPEDGKKEKPLFLIPDPTKPYRYWAP--GRAGFEERAKGTTPFETFWYV 202
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: A0A7S4P7Q6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P7Q6_GUITH)

HSP 1 Score: 188 bits (477), Expect = 2.610e-48
Identity = 100/247 (40.49%), Postives = 145/247 (58.70%), Query Frame = 2 
Query: 1292 APVDKPSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQ---GSRLDI-KSSERKTSPFNTFWYIRLGDAAMTSKVLKSSQAA---MQRSERGPERCCIARTPSQIPYKMMDSNDPRRKK 2011
            +P  +P+ +V + FE  + DH ET   AY  I PLL  +A    K P +L IYDP++C GS    LA+LGF  VYN+ E+FYEM  + ++PEHD++VTNPP+S DH+ + LR+ +  D KPW LL+PN++Y KDY+  SL         LP +LTPP RY++ SP+    ++  I KS E KT+P+ +FWY+       T  +++ +Q     M         C + +   Q+P  M DS DP RK+
Sbjct:  267 SPTSQPA-LVRHSFETTDADHAETPREAYEHILPLLHKMAEAASKKPSELRIYDPFFCTGSMKRHLASLGFTNVYNKNEDFYEMVKSKRIPEHDMVVTNPPYSLDHIPRFLRWLSVND-KPWLLLVPNYVYTKDYFSSSLRGR------LPMFLTPPGRYVYESPKHVANAQGQIRKSGEHKTAPYVSFWYVE------TRPIIQPNQVHTWWMAEKMFDKTNCRLCKNVEQLPANMRDSFDPLRKR 499
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Match: C1FIX8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FIX8_MICCC)

HSP 1 Score: 185 bits (469), Expect = 3.260e-48
Identity = 87/194 (44.85%), Postives = 121/194 (62.37%), Query Frame = 2 
Query: 1307 PSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKAPEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVLVTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGGGLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRLGDAAMTSKV 1888
            P+  VD+PFEV+  DHCET  +AY DI P L  +A  L K  + L IYDPY+C+GS  + LA LGF  VYN+ E+FY+     ++PEHDVL+TNPP+SGDH  +IL FCA+ + KPW LLLPNF+  K YY+P +  +      +P    P K Y +++P     + ++  + T+PF TFWY+     A   +V
Sbjct:  124 PAASVDHPFEVDAADHCETPFQAYQDIEPFLFRMALALKKPKDKLRIYDPYFCEGSVAKHLARLGFTSVYNKNEDFYKCIEEKRIPEHDVLLTNPPYSGDHFRRILSFCAK-NKKPWLLLLPNFVCRKQYYQPCVGEDVKALFLIP---DPTKPYRYWAPGRRGFEDRNQAKGTTPFETFWYVNYAGLAPHEEV 313
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9362.23368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4N4_ECTSI2.530e-14352.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHP0_9STRA2.990e-6748.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XRY6_HETAK1.090e-6246.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D5V1_HETAK9.640e-6246.28Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3GZA9_9STRA2.980e-5146.26Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0QTD9_9CRYP6.220e-5150.55Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1JYH6_GUITC2.500e-5049.14Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0D9T2_MICPS5.040e-4950.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S4P7Q6_GUITH2.610e-4840.49Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
C1FIX8_MICCC3.260e-4844.85Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9362contigP-canaliculata_contig9362:4209..7949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score446.8
Seed ortholog evalue1.5e-122
Seed eggNOG ortholog2880.D7G4N4
EggNOG OGs2BXY2@1,2S2G6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001820.1
Exons7
Model size2077
Cds size1698
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9362.23368.1prot_P-canaliculata_contig9362.23368.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9362 4209..7570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.238511-CDS-P-canaliculata_contig9362:4208..43191622817304.238511-CDS-P-canaliculata_contig9362:4208..4319Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 4209..4319 -
1693495211.2829392-CDS-P-canaliculata_contig9362:4208..43191693495211.2829392-CDS-P-canaliculata_contig9362:4208..4319Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 4209..4319 -
1622817304.2567694-CDS-P-canaliculata_contig9362:4498..45791622817304.2567694-CDS-P-canaliculata_contig9362:4498..4579Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 4499..4579 -
1693495211.2938905-CDS-P-canaliculata_contig9362:4498..45791693495211.2938905-CDS-P-canaliculata_contig9362:4498..4579Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 4499..4579 -
1622817304.272872-CDS-P-canaliculata_contig9362:5026..51441622817304.272872-CDS-P-canaliculata_contig9362:5026..5144Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 5027..5144 -
1693495211.3036935-CDS-P-canaliculata_contig9362:5026..51441693495211.3036935-CDS-P-canaliculata_contig9362:5026..5144Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 5027..5144 -
1622817304.2893357-CDS-P-canaliculata_contig9362:5274..53511622817304.2893357-CDS-P-canaliculata_contig9362:5274..5351Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 5275..5351 -
1693495211.3134394-CDS-P-canaliculata_contig9362:5274..53511693495211.3134394-CDS-P-canaliculata_contig9362:5274..5351Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 5275..5351 -
1622817304.3053255-CDS-P-canaliculata_contig9362:5719..58691622817304.3053255-CDS-P-canaliculata_contig9362:5719..5869Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 5720..5869 -
1693495211.3231676-CDS-P-canaliculata_contig9362:5719..58691693495211.3231676-CDS-P-canaliculata_contig9362:5719..5869Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 5720..5869 -
1622817304.321678-CDS-P-canaliculata_contig9362:6136..63341622817304.321678-CDS-P-canaliculata_contig9362:6136..6334Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 6137..6334 -
1693495211.333876-CDS-P-canaliculata_contig9362:6136..63341693495211.333876-CDS-P-canaliculata_contig9362:6136..6334Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 6137..6334 -
1622817304.3354445-CDS-P-canaliculata_contig9362:6607..75701622817304.3354445-CDS-P-canaliculata_contig9362:6607..7570Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 6608..7570 -
1693495211.3494115-CDS-P-canaliculata_contig9362:6607..75701693495211.3494115-CDS-P-canaliculata_contig9362:6607..7570Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 6608..7570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.348738-UTR-P-canaliculata_contig9362:7570..79491622817304.348738-UTR-P-canaliculata_contig9362:7570..7949Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9362 7571..7949 -
1693495211.3595943-UTR-P-canaliculata_contig9362:7570..79491693495211.3595943-UTR-P-canaliculata_contig9362:7570..7949Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9362 7571..7949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9362.23368.1

>prot_P-canaliculata_contig9362.23368.1 ID=prot_P-canaliculata_contig9362.23368.1|Name=mRNA_P-canaliculata_contig9362.23368.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=566bp
MKDKGGRSGKKRKRKVDPCGEDDGRTAVSTPRGRRHREEGAEDSWSDDHG
STTTRVEIHAVKTEDRANQRQVKRRKEEGGSSVAALLGASSTITARRPGL
GLQPCTSKVEEHGACDSAGASGVSAGPRDRVERKDTQKKKRGKKRQSSSR
GDDDCVDEAKDDVHVDREETVEGIVHEGAMYLVDSRKRVFSSERDERGEP
VQVGVLDEHRGLVLHASPSKDVVAFAAAAVTATIGATAVGDTRNSTQRTA
LKSEKKPSKKKNKNKKRKRRVESGEANAGGTVGATDADGEPEDGVRRTTG
GKYSAPVDKPSNVVDYPFEVEECDHCETSERAYADITPLLRALAGELGKA
PEDLAIYDPYYCQGSTVERLATLGFPRVYNRKENFYEMTGNDQVPEHDVL
VTNPPFSGDHVSKILRFCARRDAKPWFLLLPNFIYLKDYYEPSLTSESGG
GLALPFYLTPPKRYMFYSPQGSRLDIKSSERKTSPFNTFWYIRLGDAAMT
SKVLKSSQAAMQRSERGPERCCIARTPSQIPYKMMDSNDPRRKKARDRKR
SIERIRKKKSAWVST*
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mRNA from alignment at P-canaliculata_contig9362:4209..7949-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9362.23368.1 ID=mRNA_P-canaliculata_contig9362.23368.1|Name=mRNA_P-canaliculata_contig9362.23368.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3741bp|location=Sequence derived from alignment at P-canaliculata_contig9362:4209..7949- (Pelvetia canaliculata dioecious)
GTCGCAGACAACGGGTCAAGATCAAGCTATCCTGGACGGAGAAACTGTAA
CAAGAAGTAATTAAATTTTTATGATAGTTGGCGTCAGAAACTTCTCAGGG
TAGTTTGCACGAGTTCGTGAATAATAAGTACTTCGTACATGAAATGGAAA
CAGGAAATTCAATTTCCAATTAGACTGGAGCTACTCACTGTACAGGCAGT
TTTGGCTTTAAATCAAGTCGTGCCCCCAGCAGAGAACAACTGATCTAGTA
GGTCCGGCCAATCTCTCTCCCGGCTCAAGCTCCCTCAAGACAAACCTCCC
ATAGGTACCGAAGATCAATCGAATAAACCTACCGCGAGCCCCTTTCGCTG
GAATATATTGATGGGGAGCGACGGTTGGTATGAAGGATAAAGGAGGCAGG
TCTGGGAAGAAGCGCAAGCGGAAAGTAGACCCGTGTGGAGAAGACGATGG
GCGCACCGCCGTTTCCACCCCCCGCGGCCGACGACATCGGGAGGAGGGCG
CCGAAGACTCGTGGAGCGACGATCACGGGAGCACCACTACCCGTGTCGAA
ATTCATGCGGTTAAAACGGAGGACCGGGCGAACCAGAGACAGGTAAAGCG
GCGCAAAGAGGAGGGAGGGAGCTCAGTAGCGGCACTGTTGGGTGCGTCGT
CAACAATAACGGCGCGACGCCCTGGCCTAGGGCTACAGCCCTGTACTTCG
AAGGTGGAGGAGCATGGAGCTTGCGACAGCGCCGGGGCTTCTGGGGTAAG
CGCCGGGCCGCGGGACCGTGTCGAGAGAAAGGACACGCAGAAAAAAAAAA
GGGGGAAGAAGCGGCAATCGTCTTCACGTGGAGACGATGACTGCGTCGAC
GAAGCCAAAGACGACGTTCACGTCGATCGCGAGGAAACGGTCGAGGGGAT
CGTGCACGAGGGGGCGATGTACCTCGTCGACTCGCGCAAAAGGGTTTTCT
CATCAGAGCGGGACGAGCGGGGCGAGCCTGTTCAAGTAGGTGTGTTGGAC
GAACATCGCGGCCTTGTCCTGCACGCCTCGCCGTCGAAGGACGTTGTTGC
TTTTGCTGCCGCCGCTGTCACCGCTACCATCGGCGCCACCGCCGTGGGTG
ATACTCGTAACAGTACTCAAAGGACTGCCTTAAAGAGTGAAAAGAAACCA
AGCAAGAAGAAAAACAAAAACAAAAAGAGGAAGAGGCGTGTGGAATCGGG
AGAGGCCAACGCTGGTGGCACGGTCGGTGCAACCGACGCCGACGGCGAGC
CAGAAGACGGGGTGAGGCGGACGACGGGCGGTAAATATTCCGCTCCCGTG
GACAAACCGTCCAATGTCGTAGACTACCCCTTCGAGGTCGAGGTAAGAGG
GGTTTCATCCGCCCGACTATCGCGGTTCACGAAGCACTCCACAAGCGCTG
CCCTGCCATCGCGCGTAGCTGATATTATTCCTTTGATCTTGCGCAAGGAC
TCCTCACCTGCTAGGTAAGCTTCAAGCTTAGGAAATGACAGTTCCCTTGG
GCAAAATGCATCTAATGGTACACGAAGCTGCGTCATCTTCCCCCAGGGTA
CATGTCTCGTGCCAAATCCTGCTCCCTTCACCTTTTGCCGTTACTACCGC
TAACGTTCTTTGTAGGAGTGCGACCACTGCGAGACGAGCGAGCGTGCCTA
TGCGGACATCACGCCGCTACTGAGAGCACTGGCCGGGGAGCTGGGTAAAG
CGCCGGAGGATCTGGCCATCTACGACCCGTACTACTGCCAAGGGTCCACC
GTGGAGAGGCTTGCGACCCTGGGCTTCCCAAGGGTGTACAACCGGAAGGA
AAACTTTTACGAGGCGAGCGGAGGCGGAACCGTTAGTTGCGGGACTGTAG
AAACTCTCCGTTACACGACGAGAACCTGCACATTCGGCGATATCAGCAGT
TGCTAAGACTCGTCACGACGCGGGTCCACCTCGCACGGACAGTTTTATCT
TCATTCTCGACATGAGATCTCGAAGGGAATATGCATCATGTTAGTTAACC
CTTTCTCGCCCCCCTTCAACGCCCCCAATTGAAAAACCGGGGAAACCCAT
TCTGTGACGCGCACTCCTCGCGGATAACAGATGACCGGTAACGACCAAGT
ACCAGAGCACGATGTTCTCGTGACCAATCCTCCATTCAGCGGAGACCACG
TTTCGAAGATCCTGCGCTTCTGCGCCCGTCGTGACGCCAAACCGTGGTTT
CTGCTCTTGCCCAACTTTATCTACCTCAAGGTGCTTATACTTGAATTGCC
GCGCTCCCGACTGCGTTTGGTTGGGTATGGCTTCATTCATCTGTGGGCTA
CAATGGTACAGTAGTACATAATCTGAAGACACGGCAAACAACGAAGGACT
TTGTACTTTTGTTTTCGTTTATCCTCCAGCGACAGCGTTTTTTTTCTTCT
TACCCGCCCATGCTCCCAACAACATAGCGCAACAGATACGACATATTTCT
GCATGAAAAAGGAGTAGTTGCGCCATTCGCGCTCCGCCCCTGTCTCCTTG
CCTTGCCTGCTTAACGTACAGCCTCTGCTCCGCCCTCCACCTGTCCACCG
TCGCCCCCTCCTCCCCCCCCCACCGACCGCCGTCTTACAATGCCCCAGGA
CTACTACGAGCCGTCCCTAACAAGCGAGTCAGGAGGAGGTCTGGCGCTAC
CTTTCTACCTCACTCCTCCCAAAAGGTGAAAGTTTAGAGTGCGTCCCACC
GCGAAGCACTACAGCAACTCGTCGACGCTCACGATGAGTTCGTCGCACAA
GCCTTCCGCCTTCTGCTAACCTTCGAGGGCTTCCCGCGGATGCCCGGACG
AACAGGTATATGTTCTATAGCCCCCAGGGGTCGCGCTTGGACATCAAGAG
CTCGGAACGCAAGACGTCCCCCTTCAACACGTTTTGGTACATTCGCCTCG
GGGACGCGGCAATGACGTCGAAGGTACCCCTGCTGTGTGTACGATGCGCC
GCACTTCCGCCCTTGCGTGCTTGCGCCTGCAGGTGTTTGCCTTTCTACGT
TGTTATTCGCCGCTTCTTTTTTCTTCTTCAATCCGTAGACCCTGTCGTAC
ATGGCTTCTCGAGCGACGACAGAGCGACGTCGTGTTTAATGCCACAAGCG
CAGTATCCACCCTCCTCGGGATCGAAACGTCAGGTTTTCAGACCCTGGGG
CCAATATTTGACGTATTATGTCTGTTATCAATTTACAAAGAGACCCCCAG
CTAGTCAATTAAACTTATCTGGTGCTCAGTACAATGTAGTAGAGGAGATA
GATATTTTTGCTCACACCGCACTTCTCTTCGGCAGAGCATCCTACCTTCC
TCAATCTGGGAGTCAACATTTCGTTGCGCAATCGGTGCAACACTCTTGTC
CTCCTTTTTTGAACGTTCAGGTTTTGAAGTCATCCCAGGCAGCAATGCAA
CGGTCGGAGAGGGGCCCAGAGCGGTGTTGCATTGCCAGGACCCCTTCCCA
GGTGTCTCTGTTCATCCTTCCCGCCGACACCGCAGTCATCAGCCGTTCGC
TGCCCGTCCTCCCTTCTTAGAAAACAGTACTGCAACAATTGGTTTGTTCG
GCGCTTTAAAACCGAAGCCCTGCCGCCTGCCTCCCCTCCTGACATCCCGG
ATTACTGCGATTCTTCTCCGGTTTTCCCAGATCCCGTACAAGATGATGGA
CTCGAATGATCCTAGACGGAAGAAGGCGCGAGATCGGAAGCGCAGCATTG
AAAGGATACGGAAAAAAAAGAGCGCATGGGTCTCCACTTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9362:4209..7949-

>mRNA_P-canaliculata_contig9362.23368.1 ID=mRNA_P-canaliculata_contig9362.23368.1|Name=mRNA_P-canaliculata_contig9362.23368.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3396bp|location=Sequence derived from alignment at P-canaliculata_contig9362:4209..7949- (Pelvetia canaliculata dioecious)
ATGAAGGATAAAGGAGGCAGGTCTGGGAAGAAGCGCAAGCGGAAAGTAGA
CCCGTGTGGAGAAGACGATGGGCGCACCGCCGTTTCCACCCCCCGCGGCC
GACGACATCGGGAGGAGGGCGCCGAAGACTCGTGGAGCGACGATCACGGG
AGCACCACTACCCGTGTCGAAATTCATGCGGTTAAAACGGAGGACCGGGC
GAACCAGAGACAGGTAAAGCGGCGCAAAGAGGAGGGAGGGAGCTCAGTAG
CGGCACTGTTGGGTGCGTCGTCAACAATAACGGCGCGACGCCCTGGCCTA
GGGCTACAGCCCTGTACTTCGAAGGTGGAGGAGCATGGAGCTTGCGACAG
CGCCGGGGCTTCTGGGGTAAGCGCCGGGCCGCGGGACCGTGTCGAGAGAA
AGGACACGCAGAAAAAAAAAAGGGGGAAGAAGCGGCAATCGTCTTCACGT
GGAGACGATGACTGCGTCGACGAAGCCAAAGACGACGTTCACGTCGATCG
CGAGGAAACGGTCGAGGGGATCGTGCACGAGGGGGCGATGTACCTCGTCG
ACTCGCGCAAAAGGGTTTTCTCATCAGAGCGGGACGAGCGGGGCGAGCCT
GTTCAAGTAGGTGTGTTGGACGAACATCGCGGCCTTGTCCTGCACGCCTC
GCCGTCGAAGGACGTTGTTGCTTTTGCTGCCGCCGCTGTCACCGCTACCA
TCGGCGCCACCGCCGTGGGTGATACTCGTAACAGTACTCAAAGGACTGCC
TTAAAGAGTGAAAAGAAACCAAGCAAGAAGAAAAACAAAAACAAAAAGAG
GAAGAGGCGTGTGGAATCGGGAGAGGCCAACGCTGGTGGCACGGTCGGTG
CAACCGACGCCGACGGCGAGCCAGAAGACGGGGTGAGGCGGACGACGGGC
GGTAAATATTCCGCTCCCGTGGACAAACCGTCCAATGTCGTAGACTACCC
CTTCGAGGTCGAGATGAAGGATAAAGGAGGCAGGTCTGGGAAGAAGCGCA
AGCGGAAAGTAGACCCGTGTGGAGAAGACGATGGGCGCACCGCCGTTTCC
ACCCCCCGCGGCCGACGACATCGGGAGGAGGGCGCCGAAGACTCGTGGAG
CGACGATCACGGGAGCACCACTACCCGTGTCGAAATTCATGCGGTTAAAA
CGGAGGACCGGGCGAACCAGAGACAGGTAAAGCGGCGCAAAGAGGAGGGA
GGGAGCTCAGTAGCGGCACTGTTGGGTGCGTCGTCAACAATAACGGCGCG
ACGCCCTGGCCTAGGGCTACAGCCCTGTACTTCGAAGGTGGAGGAGCATG
GAGCTTGCGACAGCGCCGGGGCTTCTGGGGTAAGCGCCGGGCCGCGGGAC
CGTGTCGAGAGAAAGGACACGCAGAAAAAAAAAAGGGGGAAGAAGCGGCA
ATCGTCTTCACGTGGAGACGATGACTGCGTCGACGAAGCCAAAGACGACG
TTCACGTCGATCGCGAGGAAACGGTCGAGGGGATCGTGCACGAGGGGGCG
ATGTACCTCGTCGACTCGCGCAAAAGGGTTTTCTCATCAGAGCGGGACGA
GCGGGGCGAGCCTGTTCAAGTAGGTGTGTTGGACGAACATCGCGGCCTTG
TCCTGCACGCCTCGCCGTCGAAGGACGTTGTTGCTTTTGCTGCCGCCGCT
GTCACCGCTACCATCGGCGCCACCGCCGTGGGTGATACTCGTAACAGTAC
TCAAAGGACTGCCTTAAAGAGTGAAAAGAAACCAAGCAAGAAGAAAAACA
AAAACAAAAAGAGGAAGAGGCGTGTGGAATCGGGAGAGGCCAACGCTGGT
GGCACGGTCGGTGCAACCGACGCCGACGGCGAGCCAGAAGACGGGGTGAG
GCGGACGACGGGCGGTAAATATTCCGCTCCCGTGGACAAACCGTCCAATG
TCGTAGACTACCCCTTCGAGGTCGAGGAGTGCGACCACTGCGAGACGAGC
GAGCGTGCCTATGCGGACATCACGCCGCTACTGAGAGCACTGGCCGGGGA
GCTGGGTAAAGCGCCGGAGGATCTGGCCATCTACGACCCGTACTACTGCC
AAGGGTCCACCGTGGAGAGGCTTGCGACCCTGGGCTTCCCAAGGGTGTAC
AACCGGAAGGAAAACTTTTACGAGGAGTGCGACCACTGCGAGACGAGCGA
GCGTGCCTATGCGGACATCACGCCGCTACTGAGAGCACTGGCCGGGGAGC
TGGGTAAAGCGCCGGAGGATCTGGCCATCTACGACCCGTACTACTGCCAA
GGGTCCACCGTGGAGAGGCTTGCGACCCTGGGCTTCCCAAGGGTGTACAA
CCGGAAGGAAAACTTTTACGAGATGACCGGTAACGACCAAGTACCAGAGC
ACGATGTTCTCGTGACCAATCCTCCATTCAGCGGAGACCACGTTTCGAAG
ATCCTGCGCTTCTGCGCCCGTCGTGACGCCAAACCGTGGTTTCTGCTCTT
GCCCAACTTTATCTACCTCAAGATGACCGGTAACGACCAAGTACCAGAGC
ACGATGTTCTCGTGACCAATCCTCCATTCAGCGGAGACCACGTTTCGAAG
ATCCTGCGCTTCTGCGCCCGTCGTGACGCCAAACCGTGGTTTCTGCTCTT
GCCCAACTTTATCTACCTCAAGGACTACTACGAGCCGTCCCTAACAAGCG
AGTCAGGAGGAGGTCTGGCGCTACCTTTCTACCTCACTCCTCCCAAAAGG
ACTACTACGAGCCGTCCCTAACAAGCGAGTCAGGAGGAGGTCTGGCGCTA
CCTTTCTACCTCACTCCTCCCAAAAGGTATATGTTCTATAGCCCCCAGGG
GTCGCGCTTGGACATCAAGAGCTCGGAACGCAAGACGTCCCCCTTCAACA
CGTTTTGGTACATTCGCCTCGGGGACGCGGCAATGACGTCGAAGGTATAT
GTTCTATAGCCCCCAGGGGTCGCGCTTGGACATCAAGAGCTCGGAACGCA
AGACGTCCCCCTTCAACACGTTTTGGTACATTCGCCTCGGGGACGCGGCA
ATGACGTCGAAGGTTTTGAAGTCATCCCAGGCAGCAATGCAACGGTCGGA
GAGGGGCCCAGAGCGGTGTTGCATTGCCAGGACCCCTTCCCAGGTTTTGA
AGTCATCCCAGGCAGCAATGCAACGGTCGGAGAGGGGCCCAGAGCGGTGT
TGCATTGCCAGGACCCCTTCCCAGATCCCGTACAAGATGATGGACTCGAA
TGATCCTAGACGGAAGAAGGCGCGAGATCGGAAGCGCAGCATTGAAAGGA
TACGGAAAAAAAAGAGCGCATGGGTCTCCACTTGAATCCCGTACAAGATG
ATGGACTCGAATGATCCTAGACGGAAGAAGGCGCGAGATCGGAAGCGCAG
CATTGAAAGGATACGGAAAAAAAAGAGCGCATGGGTCTCCACTTGA
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