mRNA_P-canaliculata_contig93437.23352.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig93437.23352.1
Unique NamemRNA_P-canaliculata_contig93437.23352.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93437.23352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93437contigP-canaliculata_contig93437:45..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.737688-CDS-P-canaliculata_contig93437:44..4641622817302.737688-CDS-P-canaliculata_contig93437:44..464Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93437 45..464 +
1693495210.1508365-CDS-P-canaliculata_contig93437:44..4641693495210.1508365-CDS-P-canaliculata_contig93437:44..464Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93437 45..464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93437.23352.1prot_P-canaliculata_contig93437.23352.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig93437 45..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig93437.23352.1

>prot_P-canaliculata_contig93437.23352.1 ID=prot_P-canaliculata_contig93437.23352.1|Name=mRNA_P-canaliculata_contig93437.23352.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
LGPAPNYPRDAMRILCKSGRVVATRHVTWAHVPTHIPSPAVKITSTSSED
DGSSGEGHSVGDSTDSIFVYDGVSVGDGRDDLDRTPQKTKESRHWCQTNS
GKVSNAPSRGGEGNSFLRSRAGGDGRSGSDSANNTVGSGN
back to top

mRNA from alignment at P-canaliculata_contig93437:45..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig93437.23352.1 ID=mRNA_P-canaliculata_contig93437.23352.1|Name=mRNA_P-canaliculata_contig93437.23352.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=422bp|location=Sequence derived from alignment at P-canaliculata_contig93437:45..466+ (Pelvetia canaliculata dioecious)
CTTGGTCCAGCCCCAAATTACCCCCGTGACGCAATGCGCATTCTGTGCAA
ATCTGGTCGAGTTGTAGCAACGCGGCATGTAACTTGGGCCCATGTACCCA
CTCACATTCCAAGTCCTGCTGTAAAGATCACGTCCACGAGCTCCGAGGAC
GACGGGTCCAGCGGGGAGGGCCACTCCGTGGGTGACAGCACCGACAGCAT
TTTCGTGTACGACGGCGTGAGCGTTGGTGATGGTCGGGACGACCTAGACC
GCACACCCCAGAAGACGAAGGAAAGCCGGCATTGGTGTCAGACCAACTCC
GGTAAGGTTTCCAACGCGCCGTCCAGGGGCGGGGAGGGCAACTCGTTTTT
GCGCTCCAGAGCCGGAGGTGACGGCAGAAGTGGCAGTGATTCCGCGAACA
ACACCGTGGGAAGCGGAAACGA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig93437:45..466+

>mRNA_P-canaliculata_contig93437.23352.1 ID=mRNA_P-canaliculata_contig93437.23352.1|Name=mRNA_P-canaliculata_contig93437.23352.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig93437:45..466+ (Pelvetia canaliculata dioecious)
CTTGGTCCAGCCCCAAATTACCCCCGTGACGCAATGCGCATTCTGTGCAA
ATCTGGTCGAGTTGTAGCAACGCGGCATGTAACTTGGGCCCATGTACCCA
CTCACATTCCAAGTCCTGCTGTAAAGATCACGTCCACGAGCTCCGAGGAC
GACGGGTCCAGCGGGGAGGGCCACTCCGTGGGTGACAGCACCGACAGCAT
TTTCGTGTACGACGGCGTGAGCGTTGGTGATGGTCGGGACGACCTAGACC
GCACACCCCAGAAGACGAAGGAAAGCCGGCATTGGTGTCAGACCAACTCC
GGTAAGGTTTCCAACGCGCCGTCCAGGGGCGGGGAGGGCAACTCGTTTTT
GCGCTCCAGAGCCGGAGGTGACGGCAGAAGTGGCAGTGATTCCGCGAACA
ACACCGTGGGAAGCGGAAACCTTGGTCCAGCCCCAAATTACCCCCGTGAC
GCAATGCGCATTCTGTGCAAATCTGGTCGAGTTGTAGCAACGCGGCATGT
AACTTGGGCCCATGTACCCACTCACATTCCAAGTCCTGCTGTAAAGATCA
CGTCCACGAGCTCCGAGGACGACGGGTCCAGCGGGGAGGGCCACTCCGTG
GGTGACAGCACCGACAGCATTTTCGTGTACGACGGCGTGAGCGTTGGTGA
TGGTCGGGACGACCTAGACCGCACACCCCAGAAGACGAAGGAAAGCCGGC
ATTGGTGTCAGACCAACTCCGGTAAGGTTTCCAACGCGCCGTCCAGGGGC
GGGGAGGGCAACTCGTTTTTGCGCTCCAGAGCCGGAGGTGACGGCAGAAG
TGGCAGTGATTCCGCGAACAACACCGTGGGAAGCGGAAAC
back to top