mRNA_P-canaliculata_contig9333.23341.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9333.23341.1
Unique NamemRNA_P-canaliculata_contig9333.23341.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: D8LDY2_ECTSI (Protein CASP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDY2_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 9.650e-86
Identity = 206/346 (59.54%), Postives = 225/346 (65.03%), Query Frame = 1 
Query:    1 EKVIRGRVRRLEADLTSSRRLAEERGAEVGRLRGSLDAAVALAAERLEVMNRLEDDLAASSSFRPGASGAASVGTSASGGGVXXXXXRDGGEGEGGSSSTQALRELLGVAE-EGGVGGRGAVATGRAAMMVSEAEGGVMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGST--------SRAGG--DGSKDVEDG------KLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTLNYWTHSTSR 987
            E+VIRGRVRRLEADLTSSRRLAEERGA+  RL+ +LD+A ALA+ERLE +NRLEDDLA                 +A+GG  XX     GGEG        ALRELLGV E EGG  G        A         GV+GIVQAQRDRFRRRIK+LEAERE+EQRE R  Q VME LQRDNLQLYEKVRFLQSY  QRG+T        + AGG   G  DVE G        G   E   GG   S   TEAR             YG +YEARINPFTQFSQRERQRKY+ELTVAEKITL+TTRMFL NKFAR    NFVFFYVVLLH+VVF TLNYWTHS S+
Sbjct:  385 EQVIRGRVRRLEADLTSSRRLAEERGADAARLQRALDSATALASERLETINRLEDDLA-----------------TAAGGXXXXAGTPRGGEG------ADALRELLGVGEAEGGPAGXXXXXXADAG------NHGVLGIVQAQRDRFRRRIKKLEAEREDEQRETRAAQGVMENLQRDNLQLYEKVRFLQSY--QRGATGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXXGAAREGEEGG---SRKATEAR-------------YGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFAR----NFVFFYVVLLHVVVFTTLNYWTHSHSQ 679
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: A0A6U0ZB21_9STRA (Protein CASP n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZB21_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.820e-33
Identity = 127/329 (38.60%), Postives = 171/329 (51.98%), Query Frame = 1 
Query:    1 EKVIRGRVRRLEADLTSSRRLAEERGAEVGRLRGSLDAAVALAAERLEVMNRLEDDLAASSSFRPGASGAASVGTSASGGGVXXXXXRDGGEGEGGSSSTQALRELLGVAEEGGVGGRGAVATGRAAMMVSEAEG-GVMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAGGDGSKDVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTLNYWTHSTS 984
            EKV+  R++R+E    S++R  ++  AE  RL+ +L+ A     ER +++ RLE DL A SS                          D    +   S   AL  L+  + E       A   G   M     +G  ++ IVQAQRDRF RRIK+LE ER    R++   +   E+L+RDNL+LYEK+R+LQSY      +SRA       V    L     A   GG+  +  TEA+             Y SMY+A+ NPFTQFSQ ERQR+Y EL+VAEKITL+TTRMFLS+KFAR     FVFFYV+ LH +    + +W H+ S
Sbjct:  469 EKVLLARLKRVENSAVSTKRALQQSEAESARLKIALEKAENRLGERNDLVRRLERDLLAQSSA-------------------------DAHHHKSRLSVDGALEGLVATSGE-----EAATEEGDEPMGARRRQGEDMLSIVQAQRDRFVRRIKDLEEERAALTRQSGQERQTAEQLKRDNLKLYEKIRYLQSY------SSRA-------VSSPAL----RALEAGGDLEAAGTEAK-------------YKSMYDAQNNPFTQFSQMERQRRYGELSVAEKITLNTTRMFLSSKFAR----TFVFFYVIGLHALFCAAIMHWAHTGS 733
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: A0A7S2Y0X4_9STRA (Protein CASP n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0X4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.230e-24
Identity = 79/192 (41.15%), Postives = 113/192 (58.85%), Query Frame = 1 
Query:  409 VMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAGGDGSKDVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTLNYWTHSTS 984
            ++ IVQAQRDRFR R++ELEA++++   E    +   E+LQ+DNL LYEK+RFLQ++   R S++      S    +  +  + E    GG  S  P       R         Y  +YE R++PF QFSQ ERQRKY EL++ +K+TLS+ R+ LS+ F R    +F  FYV+ LHL+VF TL +  H+ S
Sbjct:    8 MLRIVQAQRDRFRARMQELEADKQQLLAELLQEKSGAEQLQKDNLALYEKIRFLQTF---RSSSATKASSASPLRGNRAVRRMEEGQGPGGGGSPLPGAGDLDVR---------YSQLYETRLSPFAQFSQTERQRKYAELSLPDKVTLSSARIVLSSSFGR----SFFLFYVLCLHLLVFGTLYHAAHTQS 183
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: W7U6B2_9STRA (Protein CASP n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6B2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.150e-24
Identity = 80/195 (41.03%), Postives = 110/195 (56.41%), Query Frame = 1 
Query:  418 IVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAGGDGSKDVEDGKLGGVAEAS---------RGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTLNYWTH 975
            I+QAQRDR++ R +ELE      ++E+  ++   E + RDNL+LYEKVRFLQSY+       R G D     +D ++ G+  ++          G G +       R      +      Y +MYE ++NPFT FS  ER RKY++L+V +KITL TTR FL++K AR A    VFFY V LHL+VF TL  W H
Sbjct:  118 ILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYK-----KGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMA----VFFYAVSLHLLVFLTLYMWGH 303
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: A0A388JP04_CHABU (Protein CASP n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JP04_CHABU)

HSP 1 Score: 107 bits (266), Expect = 6.520e-22
Identity = 106/320 (33.12%), Postives = 160/320 (50.00%), Query Frame = 1 
Query:    1 EKVIRGRVRRLEADLTSSRRLAEERGAEVGRLRGSLDAAVALAAERLEVMNRLEDDLAASSSFRPGASGAASVGTSASGGGVXXXXXRDGGEGEGGSSSTQALRELLGVAEEGGVGGRGAVATGRAAMMVSEAEGGVMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAGGDGSKDVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTL 960
            E ++  + R+LE DLT +R    ER  EV   +  +    A+  ++  ++ +LE+D+        GA G    G+S            D GEG  G    +A+   L     GGVG      T +A     E +  V+ +V  QRDRF++R+ ELE E        +   + +ER + DN++LYEK+RF+Q Y+  R   SR GG  SK    G +G V         ES  P++    Y++           +YE  INPF  FS++ER ++Y++L + ++ITL++ R  L NK+AR     FVFFY V LH+V+F TL
Sbjct:  432 ETLLLEKNRKLEHDLTQARLQIGERTKEVAAAQARVKELEAVVEKQRGLIAKLEEDILKGY----GAMGERRGGSS---------WRDDWGEGGAGFDEREAISNALQQGRGGGVGXXXXXXT-KAQGGEEEDDHSVLAVVCGQRDRFKQRMNELEEELRRVLERVKVQALELERSKSDNVKLYEKIRFVQEYQNDR-MQSRGGGRMSKR---GSVGDV---------ESGLPSDVETKYKK-----------LYEDDINPFAAFSKKERDQRYRDLGLRDRITLTSGRFLLGNKYAR----TFVFFYSVSLHIVMFATL 709
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: A0A4D9DAN9_9STRA (Protein CASP n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAN9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.080e-22
Identity = 78/195 (40.00%), Postives = 112/195 (57.44%), Query Frame = 1 
Query:  418 IVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAGGDGSKDVEDGKLGGVAEASRGGGEESSNP-TEARQAYRRNSNFPV--------ISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTLNYWTH 975
            I+QAQRDR++ R +ELE      ++E+  ++   E + RDNL+LYEKVRFLQSY+       R G       +D ++ G+  ++      +++   EA++        P           Y +MYE ++NPFT FS  ER RKY++L+V +KITL TTR FL++K AR A    VFFY + LHL+VF TL  W H
Sbjct:  669 ILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYK-----KGRVGPGALDSAQDKRMSGLEHSALHQRNVANDEGKEAQECALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMA----VFFYALSLHLLVFLTLYMWGH 854
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: F0ZWT2_DICPU (Protein CASP n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZWT2_DICPU)

HSP 1 Score: 101 bits (251), Expect = 7.780e-22
Identity = 74/196 (37.76%), Postives = 113/196 (57.65%), Query Frame = 1 
Query:  409 VMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAG----GDGSK--------DVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTL 960
            ++ IV  QRDRF+ +I EL  E+ + +++   ++   + L+ DN++LYEK+RFLQSY+  +   + +G    G G K        D+E G    V+  S  GG E    TE R             YG +YE  INPF  F+++E+ R+YKE+  AE++ L+++R FLSNK++R     F+F Y +LLHL+VF TL
Sbjct:    1 MLEIVIGQRDRFKAKIDELGIEKSKLEKQLETSRQETQSLKNDNIKLYEKIRFLQSYDKNKSGGNNSGSINIGAGGKRSSNRDTYDIERGVD--VSSGSNNGGPE----TEER-------------YGKLYEESINPFLSFNKKEKYRRYKEMNTAERVILNSSRFFLSNKYSRL----FLFIYSILLHLMVFATL 173
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: A0A1Y1I3C3_KLENI (Protein CASP n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3C3_KLENI)

HSP 1 Score: 104 bits (259), Expect = 5.480e-21
Identity = 103/335 (30.75%), Postives = 156/335 (46.57%), Query Frame = 1 
Query:    7 VIRGRVRRLEADLTSSRRLAEERGAEVGRLRGSLDAAVALAAERLEVMNRLEDDLAASSSFRPGASGAASVGTSASGGGVXXXXXRDGGEGEGGSSSTQ----ALRELLGVAEEGGVGGRGAVATGRAAMMVSEAEGGVMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTS---RAGGDGSKDVED-GKLGGVAEASR---------GGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTL 960
            +++   R+L A+LT++R    +R  E+G  RG ++       E   ++ +LEDDL  +                               +G GG  S Q     +  LL  A     G  G  A           EG ++GIV AQR+RFR+R+ +LE E           Q    +L  DN+ LY+K+RFL+++  Q+   S   R GG  + +V   G  G   ++SR         GG E    P +   A         + Y  MYE R++PF +F QRE+++ Y+ L + +KITL++ R FLSNK+AR     F+FFY +LLH ++FF L
Sbjct:  433 ILKDTNRKLAAELTAARIALGDRDNELGAARGRVEELEESQRELEGLVKKLEDDLVTA-------------------------------QGAGGGDSWQDGPPTIDRLLSGARPEASGSSGEAAP---------VEGSMLGIVTAQRERFRKRVADLETEYGRLLDSLGRAQQETAKLTSDNVSLYQKIRFLENFNSQKAPESKIRRVGGQQTGNVTVVGGTGAGRKSSRYACFSMDDPGGFEGGRQPRDEELAGGGTGPGAEVRYRKMYEDRMDPFKEFHQREQEQSYRSLRLHDKITLTSGRFFLSNKYAR----TFIFFYTILLHFLIFFIL 723
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: D3BQF7_POLPP (Protein CASP n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQF7_POLPP)

HSP 1 Score: 103 bits (257), Expect = 1.040e-20
Identity = 97/324 (29.94%), Postives = 165/324 (50.93%), Query Frame = 1 
Query:    1 EKVIRGRVRRLEADLTSSRRLAEERGAEVGRLRGSLDAAVALAAERLEVMNRLEDDLAASSSFRPGASGAASVGTSASGGGVXXXXXRDGGEGEGGSSSTQALRELLGVAEEGGVGGRGAVATGRAAMMVSEAEGGVMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGSTSRAGG----DGSKDVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTL 960
            +K+++ + R+LE +LT  R  A     E+   R  +    ++  E+ ++++RLE+D+    + R G+S   + G   + G V     +D  E     S+T +L + L    +          + ++ ++V   +  ++ IV  QRDRF+ +  ELE E+ + +++    ++    L++DN++LYEK+RFLQSY+  RG     G     + S D+E            GGG                       YG +YE  INPF  F+++E+ R+YKE+  AE++ L+T+R FLSNK++R     F+F Y +LLHL+VF TL
Sbjct:  198 DKLMKEKNRQLENELTKLRLTAGTYETELDESRRRVQQLESIQIEQSQLIHRLEEDI----TTRGGSSMLNNGGLIGNSGNVNANQPQDL-ESLISQSTTPSLNQSLNNLPDS--------TSSQSTIVVQSKDDKMLDIVVGQRDRFKVKNLELEGEKSQLEKQLETCKLETSSLKQDNIKLYEKIRFLQSYDKNRGGGIITGNPKRAENSYDLE----------RAGGGSXXXXXXXXXXXXXXXGGETEEKYGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSNKYSRL----FLFIYSILLHLLVFITL 494
[Close]
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Match: UPI000644C91D (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C91D)

HSP 1 Score: 102 bits (255), Expect = 1.790e-20
Identity = 71/189 (37.57%), Postives = 113/189 (59.79%), Query Frame = 1 
Query:  409 VMGIVQAQRDRFRRRIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGS-----TSRAGGDGSKDVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVISYGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRAEANFVFFYVVLLHLVVFFTL 960
            ++ IV  QRDRF+ +  +LE E+ + +++    ++ +  L++DN++LYEK+RFLQSY+  RG       ++  GD + D+E    GG   ++      S+N TE +             YG +YE  INPF  F+++E+ R+YKE+  AE++ L+T+R FLS K++R     F+F Y VLLHL+VF TL
Sbjct:  565 MLDIVIGQRDRFKTKNLQLENEKAQLEKQLETCKLEVHSLKQDNIKLYEKIRFLQSYDKNRGGGVITGNAKRAGDRNYDME---RGGTTAST------SNNDTEEK-------------YGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSTKYSRL----FLFIYSVLLHLLVFVTL 727
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9333.23341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDY2_ECTSI9.650e-8659.54Protein CASP n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6U0ZB21_9STRA2.820e-3338.60Protein CASP n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A7S2Y0X4_9STRA1.230e-2441.15Protein CASP n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
W7U6B2_9STRA2.150e-2441.03Protein CASP n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A388JP04_CHABU6.520e-2233.13Protein CASP n=1 Tax=Chara braunii TaxID=69332 Rep... [more]
A0A4D9DAN9_9STRA7.080e-2240.00Protein CASP n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
F0ZWT2_DICPU7.780e-2237.76Protein CASP n=1 Tax=Dictyostelium purpureum TaxID... [more]
A0A1Y1I3C3_KLENI5.480e-2130.75Protein CASP n=1 Tax=Klebsormidium nitens TaxID=10... [more]
D3BQF7_POLPP1.040e-2029.94Protein CASP n=1 Tax=Polysphondylium pallidum (str... [more]
UPI000644C91D1.790e-2037.57hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9333contigP-canaliculata_contig9333:419..5917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue3.3e-74
Seed eggNOG ortholog2880.D8LDY2
KEGG koko:K09313
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0031090,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0098588,GO:0098791
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG0963@1,KOG0963@2759
Ec32 ortholog descriptionprotein involved in intra-Golgi vesicle-mediated transport
Ec32 orthologEc-23_003340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons5
Model size987
Cds size987
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9333.23341.1prot_P-canaliculata_contig9333.23341.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9333 419..5917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817301.8424628-CDS-P-canaliculata_contig9333:418..8441622817301.8424628-CDS-P-canaliculata_contig9333:418..844Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 419..844 +
1693495209.5287051-CDS-P-canaliculata_contig9333:418..8441693495209.5287051-CDS-P-canaliculata_contig9333:418..844Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 419..844 +
1622817301.8570237-CDS-P-canaliculata_contig9333:2289..24211622817301.8570237-CDS-P-canaliculata_contig9333:2289..2421Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 2290..2421 +
1693495209.540573-CDS-P-canaliculata_contig9333:2289..24211693495209.540573-CDS-P-canaliculata_contig9333:2289..2421Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 2290..2421 +
1622817301.8704147-CDS-P-canaliculata_contig9333:4125..43161622817301.8704147-CDS-P-canaliculata_contig9333:4125..4316Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 4126..4316 +
1693495209.5507228-CDS-P-canaliculata_contig9333:4125..43161693495209.5507228-CDS-P-canaliculata_contig9333:4125..4316Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 4126..4316 +
1622817301.884389-CDS-P-canaliculata_contig9333:5198..53541622817301.884389-CDS-P-canaliculata_contig9333:5198..5354Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 5199..5354 +
1693495209.560887-CDS-P-canaliculata_contig9333:5198..53541693495209.560887-CDS-P-canaliculata_contig9333:5198..5354Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 5199..5354 +
1622817301.897839-CDS-P-canaliculata_contig9333:5835..59171622817301.897839-CDS-P-canaliculata_contig9333:5835..5917Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 5836..5917 +
1693495209.5758245-CDS-P-canaliculata_contig9333:5835..59171693495209.5758245-CDS-P-canaliculata_contig9333:5835..5917Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9333 5836..5917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9333.23341.1

>prot_P-canaliculata_contig9333.23341.1 ID=prot_P-canaliculata_contig9333.23341.1|Name=mRNA_P-canaliculata_contig9333.23341.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=329bp
EKVIRGRVRRLEADLTSSRRLAEERGAEVGRLRGSLDAAVALAAERLEVM
NRLEDDLAASSSFRPGASGAASVGTSASGGGVGGVAARDGGEGEGGSSST
QALRELLGVAEEGGVGGRGAVATGRAAMMVSEAEGGVMGIVQAQRDRFRR
RIKELEAEREEEQREARGNQVVMERLQRDNLQLYEKVRFLQSYEYQRGST
SRAGGDGSKDVEDGKLGGVAEASRGGGEESSNPTEARQAYRRNSNFPVIS
YGSMYEARINPFTQFSQRERQRKYKELTVAEKITLSTTRMFLSNKFARRA
EANFVFFYVVLLHLVVFFTLNYWTHSTSR
back to top

mRNA from alignment at P-canaliculata_contig9333:419..5917+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9333.23341.1 ID=mRNA_P-canaliculata_contig9333.23341.1|Name=mRNA_P-canaliculata_contig9333.23341.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5499bp|location=Sequence derived from alignment at P-canaliculata_contig9333:419..5917+ (Pelvetia canaliculata dioecious)
GAAAAGGTCATCCGCGGCCGCGTGAGACGCCTGGAGGCCGATCTTACCTC
CTCCCGCCGCTTAGCCGAGGAGCGAGGGGCGGAAGTTGGTCGCCTGCGAG
GATCCCTGGATGCCGCGGTGGCGCTCGCTGCCGAAAGACTGGAAGTTATG
AATCGCCTCGAGGACGACCTCGCCGCTAGCAGCAGCTTTCGACCGGGGGC
ATCTGGCGCGGCGAGCGTGGGAACCTCTGCCTCTGGAGGCGGAGTTGGTG
GGGTGGCGGCTCGGGACGGCGGGGAGGGTGAAGGCGGTTCGTCTTCGACG
CAGGCCTTGCGGGAGCTGTTGGGAGTTGCAGAGGAGGGAGGCGTTGGCGG
TCGGGGTGCCGTTGCGACTGGACGAGCAGCGATGATGGTGTCCGAGGCGG
AGGGCGGTGTAATGGGGATTGTACAGGTGAGGAGAGAGGCGTGTTTTATT
TCTTTAATTGTTTTGCGATAGATTTGGGCTGCTATCAGGTACTGTAGTGA
ACGAGAACGGATGGATGGATGGATAGGTAGTGGAGGCGTACGATCTTGTG
GAAATGAAAATATTGTCGAAAAGAAATAACCAACGTTTGTGGTTCAAAAA
AATGAGTGAAAAAAAAACGTCCTTTGAGAGCCTATAAAAGCTGGCACCGT
CATTTGTAATTTGTACAGTACGGTATACACAAAAAAACAAACAAACGAGG
TACGCGCTGCTTGACGCTATAAAAGCGTTGCCTTGTGTCCTGAAAAAATG
AATTTAGAAGAGGATAAGAGTGACAACATCGATTCGTTAATTTTCCCTGT
ATTTTTTTTCATCTTGTTTCATTATTTCAAGTTTGTATTATCTCATTTTA
GTATAATAACTCCGGTACTATTATTACTGTTATTTATATTTTATGTACTC
ATTAATTTCTTGATCCCAAAAGAAATATTATTATCGTGAATTATCTCATT
TTAGTATAATAACTCCGGTACTATTATTACTGTTATTTATATTTTATGTA
TTCATTAATTTCTTGATCCCAAAAAAAATATTATTATCGTGAATTATCTT
ATTTTAGTATAATAACCCCGATACTATTATTACTGTTATTTATATTTTAT
GTACTCGTTAATTTCTTGATCCCAAAAGAAATATTATTATCGTGAATTAT
CTCATTTTAGTATAATAACTCCGGTACTATTATTACTGTTATTTATATTT
TATGTACTCATTAATTTCTTGATCCCAAAAGAAATATTATTATCGTGAAT
TATCTCATTTTAGTATAATAACTCCGGTACTATTATTACTGTTATTTATA
TTTTATGTACTCATTAATTTCTTGATGCCAAAAGAAACATTGTTATTGTG
AATTATCTCATTTTAGTATAATAACTCCGGTACTATTATTACTGTTATTT
ATATTTATGTATTCATTAATTTCTTGATCCCTAAAAAAATATTATTATCG
TGAATAGGGCATCACCACGCGAGGTTGCTCAGGCGGTTAAGGTTCCAATG
ACACTCGTTTCACGGAGTTGGGGTCGGGATGTAGGCGAGGAACTGCCTCA
GAACAAGTCCGTTGTATTTATGCTCTTCAGGGCGAGCAAGCCCAAGTGCA
CAATTAGAAACTTTCCTAGCATATGCATGTTTGTTCCGGGGTACCTTTGG
GACAACCATTGTGGTACGAGGTGCTCTCCACATCATTATTCATTTTTATT
TTTAAATAATAATATTATTATTTTTATGTGTTGATAATTGTTATCAATTC
ATCCTTATTATGTTCGTGTACTGTTAACACGATAATATTGATACAAGTAA
CTACGGTAGTGCTTTCACCTTTTTTTAGCAGGTATCGATATTTTATTATT
TGGTATATTTTCTCGTTTCAGGCCCAGCGCGACAGATTCCGTCGGAGGAT
CAAGGAGCTAGAGGCAGAGAGGGAGGAGGAGCAGAGGGAAGCCAGGGGCA
ACCAGGTAGTGATGGAGCGCCTACAGCGGGACAACTTGCAGCTCTATGAG
AAGGTGGGTGGGTACCCCGGACTGCCCGAATTATGTTGCCCGCCATGAGA
CCAAGATATTGGTTTTACTCCGTATTACAGTATTTATTACTTTCGTCATT
GTCTTTGTAAATATTCTTGTGGGATTTCTTCCGGGGACGAACGGAACGTT
CTCGTGAAATTTTCCACCATTCCATTCCGGTCCTCTCCTCTCAGGGGGCG
GTGCCTTGTGCCTCCTCCGCCCGTGGTTTGAAATCCGTTGTGTGTTTTCG
AGTGCTGGCATCGATTTTCTGAACCTTGAGAAACACTTAGATTGAAGGAA
AAGTGCGGGTCGATCATATATAATCGCAGGTACTCTCAATATGCCCACTT
CATACAATAGTAGGTGTGGGAAAAAGAGAGGTGGTGATAACTGCAAAGGC
AGCACTCGCTCGAAACTACCTTGAGGTCTACTGGCCCTGTGCCGGCGGAC
TGTCGGCAGTGAACGCCATCTGTACGCAATTGCGTGACCCGATAAACTCG
GGACTGACCCGATGGCTTTTAATAAGTAATGGACGCCGCCGCGGAACTCG
GGAGGAATCCCGCACGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAG
CAGGCTAGCGCGGGACGGAACTGCCGAATCCGTCTCGTGAGACCCGATTC
TCAGGCGTGAACGCGGACAGAGAAATATTAATTTTCTCTGTTCAGCTGAC
CACGAGCAGGATTGATTGGCAACCATACCCGGTTGATCCATATTCTTGCT
ATATGTCCGACCATACATAGTTTACCCCGATACTTTCAACATGCCCACTT
TATATCAAAAGTGCGTGTGGGAAAAGAGAGGCGCATATTTATTGGTTCGT
GGTGATGCAAAGGCAGCACCCGTTGCTGGAACTACCTTGAGGACTACTGG
ACCAGCTGTGCCGGCGGCTTCTCGGGAGTGAACACCATCGGTACGCAATT
GCGTGACACGATGAACTCGGGTCTGACCCGATGGCGTACAGCGGTTTAAG
TAAATAAATGGACGCCGTCGCTGAAACTGGGAGGAATCCTGTGAGTAAGC
ATCAGATTCTGCCTAAGCATGGAGAATGAGCAGGCTGACGCGGGACGGGG
CGGCCAAACCCGTCTCGCGAAACCAAATTCTCAGGCGCAAAGGGGGACAG
GAAAATATTGATTTTTCCAGTTCAGCTGACCATGAGCAGGATTGGCGACC
TTGCCCGGTTGATCCATACTCTGCTAGTATGTGATGGCCATACCATACAT
ATGCATATAGAGACTATATACCAAGGGCCAGGACTATCAAACAAAAGATA
TACAGTAAATGAAAATGATTCTTAAATGTTTGCTTCCACATCTGCATGCT
GCCTCTGTGCACATGTGCGTGTGTGTGTGTGTGTGTGTATGTGTAATTAT
TAAAATTGCACATAACCGCAAGTGTATGTGTTTTGATTTAATTACACATG
ACCGCGAAATCCGGCCCTGTCACCCTAGTCATTCTATGCCACTCGCATTG
GTACTCCCAATGGGGGGTCAATGATACTTGGTACGAAAACCTCTGATCAG
ACGCGACAAAGGGGACAGTCTCTCTATAATTGTTGTTTAAGCCCTGAACG
TCTTGCGCTCCTCTCTCTGCTTAGGTGTTTGTGTATGTGTTTTGTGTGTG
TGTGTGTGTGTGTGTCTATTCCTGTGTATCTGTGTGTTTGCGCGCACGTA
TCAAAAGGTGCGATTTCTCCAGAGCTACGAATACCAGCGAGGATCCACCT
CGCGCGCAGGAGGAGACGGCTCTAAGGATGTTGAGGATGGAAAACTCGGA
GGCGTCGCAGAGGCTAGCCGGGGAGGGGGCGAGGAGTCTTCGAACCCCAC
GGAAGCTAGGCAAGCATATAGGCGGAATAGTAATTTTCCCGTTATCTCGT
GATTATTTTTCTCCCGTTTCGCTGTTGTGCTTTGTTTTTGTGTGTATATT
TTTGTTCTGGGTTACGTGTGTGTGTGTGTTTTGTTTTTTGTGTATGTGTG
TGTGTATGTTCGTTTTTCTCGCCAAACCTGTGGAAGAGCTGTGTAGCTGT
TTAGGGCATCCGAATGGCTTTACCCTGGCATGTGGACGGGATGGGTTTCC
AAGGGGGTAGGGGATGTATAGGCACGGGGCTCACCGGTAGTTGTTTTTGG
ATGAGTGTGAACGGAGAATAACTATGGGCACTACTGTACCTGGGGATAAT
CCAATGTTGGGCCTATATTTGATAATGGAAAATGGGTCCTGGTTATGAGG
ATTATCACCTATCGCCCATCACCTACCAGGTATTGGGATAGAGTCTAATA
AAAAGAAAAGCTGCGGGCGGCGAGTAAGGCGGTCCTGCGCACCCGAGAAA
AAAAAAAAAAAAAAAGAAGCTAGGTTAATTCAAAAAGTAGAAACGGAGCA
TTCTAAAACAAAAACAAAACCAACGAACCCGNNNNNNNNNNAACAGCGGG
TTATGGGACAAAGGGGAATAAAAAGAAAAACTGCGGGAGGGGAATAACGG
TTTCAGGCACAACAAATAAAAAAAAAAAAAAAAAAAAAGAAGCTAGTTTA
ATGCAAAACGTAGAACCGATGCTTTCTAAAACAAAAACAAAAACATCGAA
CCTGAAATCCTTCCTGGTTTACCGCCATCTGTAGTGTAGGAAACGGAGAC
ATATCACCAAGCTCTCGGGAACAACGTCTTCTCACTTATTCCCCCCCCTC
CTCCTCCCTATCGCCCTTGCCTTCTCCCCATTTTTCCACCCCTGTGTTCC
TTGTTTTTTGTTTTCAATTCGACGGAAAAGGTATGGCTCAATGTACGAAG
CGCGCATCAACCCCTTCACGCAGTTCTCTCAGCGAGAGAGGCAGCGCAAG
TACAAGGAGCTCACGGTGGCGGAGAAGATAACCCTCAGCACCACGCGCAT
GTTTCTCAGCAACAAGTTCGCGAGGCGAGCGGAGGCGTGCGATAGGAGTC
CGACCACGTGTAGCGTGACTTCTGCTGTTGCTGTTGATGCTGTTGCTGCT
GTGACCGCGCATTAAAAAAAAATGATAAATGAGTGCAAAAGTGTTTCTCA
GTCCTCTAGTGGCGACTGACGCTGTGGGTGCTTCGACGGGCAAGGGGTTT
ACCGTGGAGTAGGCGGTACTATAACACAGATCTGTAAAGTAGTGGGAACG
ATGCTGTGTGATAAAACGGCCATTGGACGATTGCGCGTCCCCAAATGCGC
ATCGGTGTTCCCTTAAGCGTTTTGGTGACGCGGCGTCTCTTCGCCCCGGC
CGCTTTCGTGGCCGCTGTACCCTTCCCTATCACCTCCCCCCCCCAATAAA
AACAAAAAGAACCACTCCCGCCTACCCAACTTATCCTTACAAATATTCTT
CATCATCGCCTCGTCTCACAAAATAAATGTGTCGTTTTTCGTGTCTTTTG
GCGTTTCCCTCCCTCAGGAACTTCGTTTTTTTCTACGTGGTCCTTCTTCA
CCTAGTAGTATTTTTCACCCTGAACTATTGGACACACTCCACCAGCCGG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9333:419..5917+

>mRNA_P-canaliculata_contig9333.23341.1 ID=mRNA_P-canaliculata_contig9333.23341.1|Name=mRNA_P-canaliculata_contig9333.23341.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at P-canaliculata_contig9333:419..5917+ (Pelvetia canaliculata dioecious)
GAAAAGGTCATCCGCGGCCGCGTGAGACGCCTGGAGGCCGATCTTACCTC
CTCCCGCCGCTTAGCCGAGGAGCGAGGGGCGGAAGTTGGTCGCCTGCGAG
GATCCCTGGATGCCGCGGTGGCGCTCGCTGCCGAAAGACTGGAAGTTATG
AATCGCCTCGAGGACGACCTCGCCGCTAGCAGCAGCTTTCGACCGGGGGC
ATCTGGCGCGGCGAGCGTGGGAACCTCTGCCTCTGGAGGCGGAGTTGGTG
GGGTGGCGGCTCGGGACGGCGGGGAGGGTGAAGGCGGTTCGTCTTCGACG
CAGGCCTTGCGGGAGCTGTTGGGAGTTGCAGAGGAGGGAGGCGTTGGCGG
TCGGGGTGCCGTTGCGACTGGACGAGCAGCGATGATGGTGTCCGAGGCGG
AGGGCGGTGTAATGGGGATTGTACAGGAAAAGGTCATCCGCGGCCGCGTG
AGACGCCTGGAGGCCGATCTTACCTCCTCCCGCCGCTTAGCCGAGGAGCG
AGGGGCGGAAGTTGGTCGCCTGCGAGGATCCCTGGATGCCGCGGTGGCGC
TCGCTGCCGAAAGACTGGAAGTTATGAATCGCCTCGAGGACGACCTCGCC
GCTAGCAGCAGCTTTCGACCGGGGGCATCTGGCGCGGCGAGCGTGGGAAC
CTCTGCCTCTGGAGGCGGAGTTGGTGGGGTGGCGGCTCGGGACGGCGGGG
AGGGTGAAGGCGGTTCGTCTTCGACGCAGGCCTTGCGGGAGCTGTTGGGA
GTTGCAGAGGAGGGAGGCGTTGGCGGTCGGGGTGCCGTTGCGACTGGACG
AGCAGCGATGATGGTGTCCGAGGCGGAGGGCGGTGTAATGGGGATTGTAC
AGGCCCAGCGCGACAGATTCCGTCGGAGGATCAAGGAGCTAGAGGCAGAG
AGGGAGGAGGAGCAGAGGGAAGCCAGGGGCAACCAGGTAGTGATGGAGCG
CCTACAGCGGGACAACTTGCAGCTCTATGAGAAGGCCCAGCGCGACAGAT
TCCGTCGGAGGATCAAGGAGCTAGAGGCAGAGAGGGAGGAGGAGCAGAGG
GAAGCCAGGGGCAACCAGGTAGTGATGGAGCGCCTACAGCGGGACAACTT
GCAGCTCTATGAGAAGGTGCGATTTCTCCAGAGCTACGAATACCAGCGAG
GATCCACCTCGCGCGCAGGAGGAGACGGCTCTAAGGATGTTGAGGATGGA
AAACTCGGAGGCGTCGCAGAGGCTAGCCGGGGAGGGGGCGAGGAGTCTTC
GAACCCCACGGAAGCTAGGCAAGCATATAGGCGGAATAGTAATTTTCCCG
TTATCTCGTGCGATTTCTCCAGAGCTACGAATACCAGCGAGGATCCACCT
CGCGCGCAGGAGGAGACGGCTCTAAGGATGTTGAGGATGGAAAACTCGGA
GGCGTCGCAGAGGCTAGCCGGGGAGGGGGCGAGGAGTCTTCGAACCCCAC
GGAAGCTAGGCAAGCATATAGGCGGAATAGTAATTTTCCCGTTATCTCGT
ATGGCTCAATGTACGAAGCGCGCATCAACCCCTTCACGCAGTTCTCTCAG
CGAGAGAGGCAGCGCAAGTACAAGGAGCTCACGGTGGCGGAGAAGATAAC
CCTCAGCACCACGCGCATGTTTCTCAGCAACAAGTTCGCGAGGCGAGCGG
AGGCGTATGGCTCAATGTACGAAGCGCGCATCAACCCCTTCACGCAGTTC
TCTCAGCGAGAGAGGCAGCGCAAGTACAAGGAGCTCACGGTGGCGGAGAA
GATAACCCTCAGCACCACGCGCATGTTTCTCAGCAACAAGTTCGCGAGGC
GAGCGGAGGCGAACTTCGTTTTTTTCTACGTGGTCCTTCTTCACCTAGTA
GTATTTTTCACCCTGAACTATTGGACACACTCCACCAGCCGGGAACTTCG
TTTTTTTCTACGTGGTCCTTCTTCACCTAGTAGTATTTTTCACCCTGAAC
TATTGGACACACTCCACCAGCCGG
back to top