mRNA_P-canaliculata_contig9231.23214.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9231.23214.1
Unique NamemRNA_P-canaliculata_contig9231.23214.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 8.710e-121
Identity = 186/291 (63.92%), Postives = 231/291 (79.38%), Query Frame = 1
Query:    1 GSGDSTLFLPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFPKPEVRVVDP*QEKVERLQK 873
            GS  STL LPAPDDRLLK+IKIL LSN DLA++F LF K+D AQ G  +LA VY +LG++++IFGDS        LF L+G           ++DFQ+L FSEWL A+TTFCLFEEEE+L+FCFFILDREKNGYI++++MR+LV+ML+++DPVKG T NTK+AFDKLS+QQDGKIEFWEFE+FN+AFPSLFFPAFRL+VKMMQAV GE WW  KKR  QD ++ +R+ EE+DR A+ANRLEAMRQRRI+RKMG   ++ WPCGR  YD+MFP+  V V DP  ++ ERL+K
Sbjct:    2 GSSGSTL-LPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDS--------LFELIG-----------IRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLFFPAFRLQVKMMQAVWGEAWWGRKKRNFQDRLELRRKHEEEDRLADANRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANVVVADPAADEAERLRK 272          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE)

HSP 1 Score: 352 bits (904), Expect = 2.040e-116
Identity = 195/351 (55.56%), Postives = 246/351 (70.09%), Query Frame = 1
Query:    1 GSGDSTLFLPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRL------------RVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFPKPEVRVVDP*QEKVERLQK---------------------------EAEARAELQRRTEARNMNPET 936
            GS  STL LPAPDDRLLK+IKIL LSN DLA++F LF K+D AQ G  +LA VY ++G++++IFGDS        L+ L+G           ++DFQ+L FSEWL A+TTFCLFEEEE+L+FCFFILDREKNGYI++E+MR+LV+ML+++DPVKG T NTK+AFDKLS+QQDGKIEFWEFE+FN+AFPSL FPAFRL            +VKMMQAV GE WW  KKR++QD ++ +R+ EE+DR A+ANRLEAMRQRRI+ KMG   ++ WPCGR  YD+MFP+  V V DP  ++ ERL+K                           +AE +A LQR  EAR +N ET
Sbjct:    2 GSSGSTL-LPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDS--------LYELIG-----------IRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKEEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLLFPAFRLQSTNPPAALTQTKVKMMQAVWGEAWWGRKKRKVQDRLELRRKHEEEDRLADANRLEAMRQRRIKSKMGACKYFCWPCGRAEYDKMFPRTNVVVADPGADEAERLRKVLRMIPPEDVNMREDRKRGGPAYITPAQAEEKARLQREMEARYLNYET 332          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.250e-57
Identity = 113/306 (36.93%), Postives = 181/306 (59.15%), Query Frame = 1
Query:   25 LPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFPKPEVRVVDP*QEKV--ERLQKEAEARAELQRRTEARNMNPET 936
            +P PD R LK +++ H++  +L   ++ F   DK   G   ++  Y    ++R+IFGD+            + + + C            L F E++HAV T+CLFE++E+L+FCF+I D++KNGYI++E++R +V++L+ + P   +  NTK+A D+L    DGK++F EF+ FNR+FP+LF+PAFR++V M+  + G+ WW+ KKR LQDE D KR  EE  +  E  RL  M+QR+IR+KMG   ++     R+ Y+ +FP   +   D   EK   +  ++ A+AR + +   E    NPET
Sbjct:    7 VPTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDA------------IFELIDCNQSG-------SLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKARLRKMQQRKIRKKMGYVRYFCCFLERKKYELLFP---IEDSDNKNEKTAAQLAEERAKAREKAKHLAELAIKNPET 290          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.670e-53
Identity = 116/318 (36.48%), Postives = 169/318 (53.14%), Query Frame = 1
Query:    7 GDSTLFLPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNG------------------YIDREDMRILVSMLHHVDPVK---GVTRN---------------------------TKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFP 816
            G     LP PDDR+   IK L L+N +LA+ F +F  HD A+ G   LAT Y ++G+R+++FGDS        +F LLG           V+D +++ F EWL A+ T+CLF+E +VLK+CF+ILDREK                    YI  ++ ++L  +L++VD  +   G TRN                            ++A +K+ +Q DGKIEFWE E+FN+AFPSL +PAFR++VKM Q V GE WW  ++R L ++V  ++ LE     A+  R      +R+RRK+G    Y  P   + Y E+ P
Sbjct:    2 GGGISLLPEPDDRIANCIKALCLNNTELAQAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDS--------IFDLLG-----------VRDTREIDFGEWLQAIVTYCLFDESDVLKYCFYILDREKQQLRKGAVGGAKADAFIKERYIVMDESKLLADLLYNVDCKRRPSGNTRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXRIALNKVPVQADGKIEFWELELFNKAFPSLLYPAFRMQVKMTQLVWGEDWWDRRRRMLNEDVATRKELERLALEADKKRRRKAYDQRVRRKLGVARFYCCPWAVDRYQELHP 300          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.200e-47
Identity = 104/308 (33.77%), Postives = 172/308 (55.84%), Query Frame = 1
Query:   13 STLFLPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFPKPEVRVVDP*QEKVERLQKEAEARAELQRRTEARNMNPET 936
            +++ +P PD R LK ++ +++   +LA  +  F + DK   G   +   Y L  ++R+IFGD              G F  C+     +   ++L F E+L AV T+CLFE +E+L+FCF+I DR+KNGYI +E++ +++ +L+H+ P    + NT+ A + L    D K+++ EF  F+  FP+LF+PAFR++  M+   +G+RWW  KKR L +E   +  +E+     E  RL  +R++RIR+KMG   +   P  R A+ ++FP  + +      E   ++QK A+ R   +R  E    NPET
Sbjct:    3 ASMTVPNPDHRTLKVMEFINIGVKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGD--------------GIFDLCD-----IHHTEELDFGEYLVAVITYCLFEPQEILRFCFYIFDRDKNGYIMKEELELMLRVLYHIVPPNDFSGNTRNALELLDFNDDEKVDWQEFNRFHVLFPALFYPAFRIQQTMITQTMGQRWWDKKKRYLHEEKVRRDMIEQLAARKEHARLLKLREKRIRKKMGLLRYMFCPAQRAAFRKLFPVDDAQAEKTLSEAELQVQK-AKQREVERRLRELNAKNPET 290          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 164 bits (416), Expect = 7.840e-44
Identity = 98/250 (39.20%), Postives = 140/250 (56.00%), Query Frame = 1
Query:   25 LPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHY 774
            +P PDDRL KTI +L LS  ++ + + +F K+D+   G   +   Y L+ + RT+FGDS        LF L+   + C     G  D     FSE++  + T+ LF   ++LKFCFF+ D++KNGYID +++  LV MLH  +P    T N + A        DGKI+F EF+  N  FP L  PAFR++  MM   LGE+WW  KK  LQ+E +    LEE+ R  E  R    +QR++R KMG + +Y
Sbjct:    5 IPVPDDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDS--------LFELVD--IDCS----GTLD-----FSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHGNNP----TSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWWNGKKLMLQEERNADNALEERLRLKELQRQHRNQQRQVRHKMGFFGYY 231          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A8J2S6B5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6B5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.280e-42
Identity = 95/273 (34.80%), Postives = 153/273 (56.04%), Query Frame = 1
Query:   28 PAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYN-LLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFPKPE-VRVVD 840
            P  DDR+ K ++  +L   D+  ++ +F KHDK +     ++  Y+ ++   RTIF D         LF L+              D + + F E++ AVTT+C FE  EVLKFCFF+ DR+K G+I +E+MR+ V  +H  +    ++ N + A D L  ++DGK +F EF+  +  +PS+ FPAFRL+  MMQA+ GE++W+ KK +L  + +++R+ E      E       R+ ++RR MG   +YL P  R  Y E++P P+  RV++
Sbjct:   14 PTADDRIAKAMQTFNLKEKDIRVLWHMFKKHDKERRSIIAISDFYDKIVFVPRTIFCDG--------LFDLIE-----------AADSESIDFGEFVAAVTTYCFFEIPEVLKFCFFVFDRDKKGFITQEEMRLFVDAMHGNE----MSTNVEFALDNLKYRKDGKFDFEEFKGMHHLYPSVLFPAFRLQNAMMQAMGGEQFWESKKLELSMQKEDERKREANREAREKAEAYKYREDQVRRHMGSIKYYLMPKNRAKYYEVYPLPKKYRVME 263          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.870e-39
Identity = 89/264 (33.71%), Postives = 144/264 (54.55%), Query Frame = 1
Query:   28 PAPDDRLLKTIKILHLSNLDLAEIFALFNKHDKAQHGYFTLATVYN-LLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFP 816
            P  DDR+ +  +++ L+  D+   + +F K D  + G       +  ++ + R +FG++        +F L+             +D  KL F E+L  V T+C F+E E+L+FCFFI DREKNGYID+++++  V +LH+   V     N + AF  +  Q DGK +F EF+  N+ FP++ +PAFR++  MM  ++GE WW+ KK  L  + +++R    +    E N  E  RQ++IR  MG   +YL P  R  +DE +P
Sbjct:    6 PVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNA--------IFELID-----------AEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQVA----NVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQKKLMLTLDKEDQRSAHARMMRREFNNRERTRQKQIRHDMGPVKYYLQPSKRSMFDEKYP 246          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: W4FPF5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPF5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.750e-36
Identity = 93/264 (35.23%), Postives = 135/264 (51.14%), Query Frame = 1
Query:   25 LPAPDDRLLKTIKILHLSNLDLAEIFALFNKHDK-----AQHGYFTLATVYNLLGKRRTIFGDSFKYWHLSVLFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAY 801
            +PAPD+R+LKTI+ L L+  DL  ++  F+K DK     +  G       +    + RT  GD+        +F L+      +  N G  D     FSE++ A+  FCL   +E+LKFCFF+ D++KNG I+  ++  L+ MLH        T N   A +K     DGK++F EF+I N+ FP+L +P +RL+  M    +GE WW  +   L D  D K   E  D  A A      R+R+ R+ MG   +YL PC R AY
Sbjct:    7 IPAPDERMLKTIEKLQLNESDLRALYKRFSKSDKEVRRTSNSGSIDRTEFFRSFNEERTAVGDA--------VFALI------DIDNSGQLD-----FSEYVEALGAFCLLNTDEILKFCFFVFDQDKNGTIEGMELDALLEMLHS----DSATSNMAAAMEKFDFNGDGKVDFKEFQILNQQFPTLLYPVYRLQQSMKVHSMGESWWNRRATLLNDLKDLK---ENGDAAAIAASKAKDRRRKTRQNMGCLRYYLCPCRRSAY 244          
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Match: A0A024TD15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TD15_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.900e-34
Identity = 96/264 (36.36%), Postives = 141/264 (53.41%), Query Frame = 1
Query:   25 LPAPDDRLLKTIKILHLSNLDLAEIFALF-NKHDKAQHGYFTLATVYNLLGK-RRTIFGDSFKYWHLSV---LFFLLGKFVKCEPQNRGVQDFQKLIFSEWLHAVTTFCLFEEEEVLKFCFFILDREKNGYIDREDMRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPSLFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANRLEAMRQRRIRRKMGKYNHYLWPCGREAY 801
            +PAPD+R+LKTI+ L L+  DL  ++  F N   + Q G    +  ++  G   RT F  SF+    +V   +F L+      +  N G  D     FSE++ A+  FCL   +EVLKFCFF+ D++KNG I+  ++  L+ MLH        T N   A DK     DGK++F EF+I N+ FP+L +P +RL+  M    +GE WW  K+  L  ++ + R  E  D TA A      ++R+ R+ MG   +YL PC R AY
Sbjct:    7 IPAPDERMLKTIEKLQLNESDLRTLYKRFSNSSPRFQRGLLMRSLDHSNSGSINRTEFFRSFREERTAVGDAVFALI------DIDNSGQLD-----FSEYVEALGAFCLLNTDEVLKFCFFVFDQDKNGTIEGMELDALLEMLH----ADNATSNMAAAMDKFDFNGDGKVDFREFQILNQQFPTLLYPVYRLQQSMKVHSMGEAWWN-KRATLLSQLKDLR--ENGDATALAAAKAKEQRRKTRQNMGCLRYYLCPCRRSAY 252          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9231.23214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J3_ECTSI8.710e-12163.92EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L1H5_9PHAE2.040e-11655.56EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2C3E2_9STRA1.250e-5736.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZCW1_9STRA1.670e-5336.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S8V9R4_9STRA5.200e-4733.77Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2R5GWK3_9STRA7.840e-4439.20Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A8J2S6B5_9STRA7.280e-4234.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2D7S8_9STRA1.870e-3933.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4FPF5_9STRA8.750e-3635.23Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TD15_9STRA3.900e-3436.36Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9231contigP-canaliculata_contig9231:4106..6472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.0
Seed ortholog evalue2.9e-51
Seed eggNOG ortholog2880.D7G2J3
EggNOG OGs2DCZ5@1,2SCZN@2759
Ec32 ortholog descriptionEF-hand domain protein
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-12_001730.1
Exons5
Model size1120
Cds size429
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.3648324-UTR-P-canaliculata_contig9231:4105..43521622817293.3648324-UTR-P-canaliculata_contig9231:4105..4352Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 4106..4352 -
1693495204.2928243-UTR-P-canaliculata_contig9231:4105..43521693495204.2928243-UTR-P-canaliculata_contig9231:4105..4352Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 4106..4352 -
1622817293.3755546-UTR-P-canaliculata_contig9231:4663..46901622817293.3755546-UTR-P-canaliculata_contig9231:4663..4690Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 4664..4690 -
1693495204.3039596-UTR-P-canaliculata_contig9231:4663..46901693495204.3039596-UTR-P-canaliculata_contig9231:4663..4690Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 4664..4690 -
1622817293.40965-UTR-P-canaliculata_contig9231:5575..57891622817293.40965-UTR-P-canaliculata_contig9231:5575..5789Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 5576..5789 -
1693495204.3373382-UTR-P-canaliculata_contig9231:5575..57891693495204.3373382-UTR-P-canaliculata_contig9231:5575..5789Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 5576..5789 -
1622817293.4202955-UTR-P-canaliculata_contig9231:6038..61451622817293.4202955-UTR-P-canaliculata_contig9231:6038..6145Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 6039..6145 -
1693495204.3474488-UTR-P-canaliculata_contig9231:6038..61451693495204.3474488-UTR-P-canaliculata_contig9231:6038..6145Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 6039..6145 -
1622817293.43197-UTR-P-canaliculata_contig9231:6376..64721622817293.43197-UTR-P-canaliculata_contig9231:6376..6472Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 6377..6472 -
1693495204.3579276-UTR-P-canaliculata_contig9231:6376..64721693495204.3579276-UTR-P-canaliculata_contig9231:6376..6472Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9231 6377..6472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.3857179-CDS-P-canaliculata_contig9231:4690..49421622817293.3857179-CDS-P-canaliculata_contig9231:4690..4942Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9231 4691..4942 -
1693495204.3139043-CDS-P-canaliculata_contig9231:4690..49421693495204.3139043-CDS-P-canaliculata_contig9231:4690..4942Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9231 4691..4942 -
1622817293.3966923-CDS-P-canaliculata_contig9231:5398..55751622817293.3966923-CDS-P-canaliculata_contig9231:5398..5575Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9231 5399..5575 -
1693495204.3244355-CDS-P-canaliculata_contig9231:5398..55751693495204.3244355-CDS-P-canaliculata_contig9231:5398..5575Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9231 5399..5575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9231.23214.1prot_P-canaliculata_contig9231.23214.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9231 4691..5575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9231.23214.1

>prot_P-canaliculata_contig9231.23214.1 ID=prot_P-canaliculata_contig9231.23214.1|Name=mRNA_P-canaliculata_contig9231.23214.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=143bp
MRILVSMLHHVDPVKGVTRNTKMAFDKLSIQQDGKIEFWEFEIFNRAFPS
LFFPAFRLRVKMMQAVLGERWWKIKKRQLQDEVDNKRRLEEKDRTAEANR
LEAMRQRRIRRKMGKYNHYLWPCGREAYDEMFPKPEVRVVDP*
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mRNA from alignment at P-canaliculata_contig9231:4106..6472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9231.23214.1 ID=mRNA_P-canaliculata_contig9231.23214.1|Name=mRNA_P-canaliculata_contig9231.23214.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2367bp|location=Sequence derived from alignment at P-canaliculata_contig9231:4106..6472- (Pelvetia canaliculata dioecious)
GGATCGGGCGATTCTACGCTCTTCTTGCCGGCCCCAGACGATCGTTTGCT CAAAACCATCAAGATACTTCACTTGAGCAATTTGGACCTCGCTGAGGTGA TCATTTATTTCCGTATTTAACTGATGCCAAACTACAACCTCTTGATATAT AATGCCTAAATCAGAGCTGCCCAAGAGTACGTACTGCGGAATTATCCACG TTGAGCACTCGTACCAGGCACGAGAATAGTACCAGAATGGGCAAAGACAT GGTCCGTTTCTCCAATAATAGTCAATCAATCCAACATCATCCCCCGATCC CCACATTTCACTTTGTACCTCGCGGAGATATTTGCATTATTCAACAAGCA CGACAAGGCTCAGCATGGCTACTTCACACTTGCAACCGTGTATAACTTGC TTGGCAAGAGGAGAACAATATTTGGAGACAGCTTGTTTGAGCTCATTGCT GAGCCATAGGGACTAAATATTAAAATATTAAAATATGAGCGCTGTTGTAT TATTACGGGTCAGTTCCACTATTTACGAGTATAACGTCTCAGGAGCGCAC GGAGGTTTCGAGCAAGCTCGTTGTCCGATCGTCGGCATTTTGTAATTTTT CTACCTAGCTCGTGGTTTCTCATCGCTTTCATCACCTTTCGCACCCGCTG TGCATAGGTCGAAGGCAATATTCATCCCTCAAGTAAATATTGGCATCTTT CCGTTTTGTTTTTTTTGCTTGGCAAATTTGTGAAATGTGAACCTCAAAAT CGAGGTGTCCAAGATTTCCAGAAACTTATATTCTCAGAGTGGCTGCATGC CGTCACGACGTTCTGTCTCTTCGAAGAGGAAGAGGTCCTTAAGTTCTGCT TTTTCATCCTCGATCGCGAAAAAAACGGTTACATAGACAGGGAAGACATG CGGATCCTCGTAAGCATGCTTCACCACGTTGATCCCGTCAAGGGGGTCAC CAGAAACACCAAGATGGCGTTCGACAAGCTCTCTATCCAGCAGGACGGAA AGATCGAGTTCTGGGAATTCGAGATATTTAACCGGGCGTTTCCTTCTCTG TTTTTCCCGGCATTCCGTCTGCGGGTGGGCAAGCGGTCGGACTCCGCATG AAAAAAGGCAGTGCTCAAACGTACCGGTACAGACACTATTTCAATTAGAT TAGCTAGAGTCAAATAATAGAGTTATGGGTATTTCCAACATCGTACCGTC AGCCGAAAACGACACCTCGAGTCGCTGACATGGTCGGGTGTACGGAGCAC CACTGTATCACGGCCATTATGACCTTAACTCGCTATCTGCACATGTGTTC GCGAGCTTGCGATCGTCCCAGCTCAATTATGATGAGAAAACTCGAAAGCC TGGAAACAAATGCGCCAATCACTAGGCGCACAGATGGTAAATAAGAACTG TGCTCTAATTGATAAGTCAGTCTCCCGGGGCCTGCACCGATATACAGCAC TTGTAGTCAGATCGATCGCTGAACAGCGTTACTTGCTTGGGCTCTCTCAG CGTCGCCGTGGTATGTGCCACCTATTGTAGGTCAAGATGATGCAAGCCGT GCTCGGCGAGCGGTGGTGGAAAATAAAGAAGCGTCAACTCCAGGATGAGG TCGATAACAAAAGACGCCTTGAGGAGAAGGATCGCACGGCCGAGGCGAAT CGACTTGAGGCCATGCGTCAGCGGCGCATCAGGCGGAAAATGGGTAAATA CAATCACTATTTATGGCCGTGCGGGCGGGAGGCGTATGACGAGATGTTCC CGAAGCCTGAAGTTCGCGTCGTGGATCCGTAGCAGGAAAAAGTCGAGCGC TTGCAAAAGGTTAGGAAACAGCTTTTTTCCAGAGCCCGTGCAAACGTACA GATAACGGAATGGATCACGCACCAGCGGTACAACCCAGGGCATTCTAGAT CGGGGCGAAATAACGCACGAAGATCATTATTTCCGTAGCATTACCCCTTG AGTGTAAGCACGTCTTCACAAAACCACCTAGGCCAGACGCGCGGGGTAAC CGCAGCAGGATCACCTCCTTACGACGTTGTCTCGGTGGTCGCAGGCTTCA TTCAGCGGACTCGGCTGCAACATCATTCCCGCTCATTCCTTGTACTGCTA AAATAAATTTCACGATTCAGGAGGCCGAAGCTAGGGCAGAGCTCCAGAGG AGGACGGAAGCACGTAATATGAATCCGGAGACAGGAATACAAAAGATACC GAGAAAGAGTGGATGCTAAGAGAGAGAAACAAAGGAAACAGAATGACGAA AGCCCTTCACACGCTCGTCGACCAGTCAAGTGGGAAGAGAATGGTCGTGA TAGAAGATTGCGACTCGAGAATCGCAGGGCTAAGATTGGGAGGATGCCTG ACGTGGAGAGGGGATTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig9231:4106..6472-

>mRNA_P-canaliculata_contig9231.23214.1 ID=mRNA_P-canaliculata_contig9231.23214.1|Name=mRNA_P-canaliculata_contig9231.23214.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig9231:4106..6472- (Pelvetia canaliculata dioecious)
ATGCGGATCCTCGTAAGCATGCTTCACCACGTTGATCCCGTCAAGGGGGT
CACCAGAAACACCAAGATGGCGTTCGACAAGCTCTCTATCCAGCAGGACG
GAAAGATCGAGTTCTGGGAATTCGAGATATTTAACCGGGCGTTTCCTTCT
CTGTTTTTCCCGGCATTCCGTCTGCGGATGCGGATCCTCGTAAGCATGCT
TCACCACGTTGATCCCGTCAAGGGGGTCACCAGAAACACCAAGATGGCGT
TCGACAAGCTCTCTATCCAGCAGGACGGAAAGATCGAGTTCTGGGAATTC
GAGATATTTAACCGGGCGTTTCCTTCTCTGTTTTTCCCGGCATTCCGTCT
GCGGGTCAAGATGATGCAAGCCGTGCTCGGCGAGCGGTGGTGGAAAATAA
AGAAGCGTCAACTCCAGGATGAGGTCGATAACAAAAGACGCCTTGAGGAG
AAGGATCGCACGGCCGAGGCGAATCGACTTGAGGCCATGCGTCAGCGGCG
CATCAGGCGGAAAATGGGTAAATACAATCACTATTTATGGCCGTGCGGGC
GGGAGGCGTATGACGAGATGTTCCCGAAGCCTGAAGTTCGCGTCGTGGAT
CCGTAGGTCAAGATGATGCAAGCCGTGCTCGGCGAGCGGTGGTGGAAAAT
AAAGAAGCGTCAACTCCAGGATGAGGTCGATAACAAAAGACGCCTTGAGG
AGAAGGATCGCACGGCCGAGGCGAATCGACTTGAGGCCATGCGTCAGCGG
CGCATCAGGCGGAAAATGGGTAAATACAATCACTATTTATGGCCGTGCGG
GCGGGAGGCGTATGACGAGATGTTCCCGAAGCCTGAAGTTCGCGTCGTGG
ATCCGTAG
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