mRNA_P-canaliculata_contig107485.989.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107485.989.1
Unique NamemRNA_P-canaliculata_contig107485.989.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI00199CF84C (DNA mismatch repair protein MutT n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00199CF84C)

HSP 1 Score: 240 bits (612), Expect = 1.330e-79
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 1
Query:   13 RTDCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYAKMVLFSADA 414
            RTDCVGVVC+ G EVLLIQR TAPRKGEWSIPGGRIEPNETE+QAALREL+EET V+ADLLTKIT L+ADFEGFHYRLHDYLARWT GEP AGDDAD+ARFV L EIDALGMWPETVRVIREG+AKM LFS +A
Sbjct:    8 RTDCVGVVCLRGNEVLLIQRGTAPRKGEWSIPGGRIEPNETESQAALRELTEETSVTADLLTKITALDADFEGFHYRLHDYLARWTDGEPVAGDDADQARFVALTEIDALGMWPETVRVIREGHAKMALFSDNA 141          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI000478695C (NUDIX hydrolase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000478695C)

HSP 1 Score: 166 bits (419), Expect = 3.400e-50
Identity = 79/124 (63.71%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 MDVKRTDCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVI 372
            +D    DCVGV+C  G++VLLI+R TAPRKGEWSIPGGRIE  E+E  AALREL EET + A L  K+  ++A FE F+YRLHDY ARW SGEPQ GDDA  ARFVP  E+D LGMW +T  VI
Sbjct:    7 IDCAPVDCVGVICFRGDDVLLIKRGTAPRKGEWSIPGGRIEDGESERDAALRELFEETSIMAALEDKVATIDAQFEDFNYRLHDYAARWISGEPQFGDDAADARFVPPHELDGLGMWSKTREVI 130          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A8J3CS84_9PROT (DNA mismatch repair protein MutT n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS84_9PROT)

HSP 1 Score: 151 bits (381), Expect = 1.090e-44
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query:   58 LLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYA 387
            +LI+R+  PR GEWS+PGGRIEP E+EA AALREL+EETGV+A L  K+ V+ ADFEGF YRLHDY A WTSG+P   DDA +ARF+P+A+I ALGMW +T  VIR+ Y+
Sbjct:    1 MLIRRANPPRAGEWSLPGGRIEPGESEADAALRELTEETGVTAMLGEKVAVIEADFEGFCYRLHDYAAVWTSGDPCGADDALEARFIPVADIGALGMWSKTNTVIRDAYS 110          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A420WIS7_9PROT (8-oxo-dGTP diphosphatase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WIS7_9PROT)

HSP 1 Score: 151 bits (381), Expect = 1.640e-44
Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   19 DCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVI 372
            DCVG++C  GEEVLLI+R T PRKGEWSIPGGRIE  E+EA AALREL EET V+A + +KI  + A FEGF+Y LHDY+A W  G P+AGDDA +A FV + +I    MW +T  VI
Sbjct:    8 DCVGIICFRGEEVLLIKRGTPPRKGEWSIPGGRIEAGESEASAALRELYEETSVTATIHSKIATIPAKFEGFNYILHDYVAIWQDGTPKAGDDASEAIFVTMEDISMKEMWSKTKEVI 125          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A848V0A9_9PROT (NUDIX hydrolase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V0A9_9PROT)

HSP 1 Score: 150 bits (379), Expect = 3.400e-44
Identity = 70/120 (58.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:   19 DCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIRE 378
            DCVGVVC  G +VLLI+R   PR GEWSIPGGRIE  ETE +A LREL+EET V A++L KI +++A F+G  +RLHDY A WT    +AGDDA  A FV +++I  L MWP+TVR+I++
Sbjct:   10 DCVGVVCFKGSDVLLIRRGKPPRMGEWSIPGGRIELGETEREAVLRELNEETNVDAEILGKIEIIDAQFDGEPFRLHDYAAIWTGKNVRAGDDAAHAEFVEMSKIGQLSMWPDTVRIIQK 129          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI001A9F8990 (NUDIX hydrolase n=1 Tax=Brevundimonas goettingensis TaxID=2774190 RepID=UPI001A9F8990)

HSP 1 Score: 149 bits (377), Expect = 8.230e-44
Identity = 77/120 (64.17%), Postives = 88/120 (73.33%), Query Frame = 1
Query:   25 VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFE--GFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIRE 378
            VGVVC+ GEEVLLI+R  APR GEWS+PGGRIEP E    AALREL EETGV AD++  + V++  F   G HY L DY ARW SGEP AGDDA +ARFV L EIDAL  W ET R+IR+
Sbjct:   14 VGVVCLRGEEVLLIRRGKAPRAGEWSLPGGRIEPGERAVDAALRELREETGVEADIIGLVDVVDGIFPEAGMHYVLIDYAARWVSGEPLAGDDAAEARFVRLEEIDALIDWGETRRIIRK 133          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI000405C82E (NUDIX hydrolase n=1 Tax=Brevundimonas aveniformis TaxID=370977 RepID=UPI000405C82E)

HSP 1 Score: 145 bits (365), Expect = 4.150e-42
Identity = 75/131 (57.25%), Postives = 88/131 (67.18%), Query Frame = 1
Query:   25 VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYAKMVLFSADAP 417
            VGVVC  GEEVLLIQR   PR G+WS+PGGRIEP E    AALREL EETGV AD+L  I V++  F   HY L DY ARW SG+P AGDDA +A FVP+ E  A   W ET R++  GY +   F++ AP
Sbjct:    7 VGVVCFRGEEVLLIQRGRPPRAGQWSLPGGRIEPGERAVDAALRELREETGVEADILGLIEVVDGLFPDHHYVLIDYAARWVSGDPVAGDDAAEAAFVPIQEALARVDWSETRRILAMGYQR---FASHAP 134          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A7W9A184_9CAUL (8-oxo-dGTP diphosphatase n=2 Tax=Brevundimonas halotolerans TaxID=69670 RepID=A0A7W9A184_9CAUL)

HSP 1 Score: 145 bits (365), Expect = 6.000e-42
Identity = 76/141 (53.90%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    4 DVKRTDC---------VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADF--EGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYAKM 393
            D+  TDC         VGV+C+ G++VLLI+R   PR GEWS+PGGR+EP ET   AALREL+EETGV ADL   +  ++  F   G HY L D+LARWTSGEP AGDDA  ARF PL E++    W ET+RVIR   A++
Sbjct:    3 DLPSTDCPPMSAPVAAVGVICLRGDQVLLIRRGQPPRLGEWSLPGGRVEPGETLRDAALRELAEETGVEADLGPLVDAVDGIFPESGRHYVLIDFLARWTSGEPVAGDDAADARFWPLDEVEQHVAWAETIRVIRLAVARL 143          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A0Q7RSC7_9CAUL (Phosphohydrolase n=1 Tax=Brevundimonas sp. Root1423 TaxID=1736462 RepID=A0A0Q7RSC7_9CAUL)

HSP 1 Score: 144 bits (362), Expect = 1.710e-41
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   25 VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGF--HYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVI 372
            VGVVC+ G+EVLLI+R T PR+GEWS+PGGRIEP E    AALREL EETGV A++   I V++  F     HY L DY ARW SGEP AGDDA +ARFVPL E++AL  W ET R+I
Sbjct:   12 VGVVCLRGDEVLLIRRGTPPRQGEWSLPGGRIEPGERAVDAALRELREETGVEAEITGLIDVVDGVFPEARRHYVLIDYAARWMSGEPLAGDDATEARFVPLDEVEALVSWSETHRII 129          
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI00037758CB (NUDIX hydrolase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00037758CB)

HSP 1 Score: 143 bits (361), Expect = 1.900e-41
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   19 DCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGY 384
            D VGV+C  G+EVLLI+RS  PRKG+WS+PGGR+EP E+   AALREL EETGV+A L  KI  ++A+F   HY LHDY+A++ SG+ +AGDDA  A+F  + +I  L MWP+T  V+R+ +
Sbjct:   12 DAVGVICFRGDEVLLIRRSKPPRKGDWSLPGGRVEPGESYESAALRELFEETGVTAKLGIKIATIDANFGTHHYLLHDYIAQYISGDVRAGDDAVDAQFFAMEDIAELKMWPKTEAVVRQAW 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199CF84C1.330e-7985.82DNA mismatch repair protein MutT n=2 Tax=Litorimon... [more]
UPI000478695C3.400e-5063.71NUDIX hydrolase n=1 Tax=Hellea balneolensis TaxID=... [more]
A0A8J3CS84_9PROT1.090e-4464.55DNA mismatch repair protein MutT n=1 Tax=Algimonas... [more]
A0A420WIS7_9PROT1.640e-4461.028-oxo-dGTP diphosphatase n=1 Tax=Litorimonas taean... [more]
A0A848V0A9_9PROT3.400e-4458.33NUDIX hydrolase n=1 Tax=Hellea sp. TaxID=2715692 R... [more]
UPI001A9F89908.230e-4464.17NUDIX hydrolase n=1 Tax=Brevundimonas goettingensi... [more]
UPI000405C82E4.150e-4257.25NUDIX hydrolase n=1 Tax=Brevundimonas aveniformis ... [more]
A0A7W9A184_9CAUL6.000e-4253.908-oxo-dGTP diphosphatase n=2 Tax=Brevundimonas hal... [more]
A0A0Q7RSC7_9CAUL1.710e-4161.86Phosphohydrolase n=1 Tax=Brevundimonas sp. Root142... [more]
UPI00037758CB1.900e-4154.92NUDIX hydrolase n=1 Tax=Robiginitomaculum antarcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107485contigP-canaliculata_contig107485:37..456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score166.4
Seed ortholog evalue9.6e-39
Seed eggNOG ortholog1121948.AUAC01000003_gene2425
KEGG koko:K03574
EggNOG free text desc.Belongs to the Nudix hydrolase family
EggNOG OGs1N1XV@1224,2UDI0@28211,43YA3@69657,COG1051@1,COG1051@2
EC3.6.1.55
COG Functional cat.F
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.0713081-CDS-P-canaliculata_contig107485:36..4561622815644.0713081-CDS-P-canaliculata_contig107485:36..456Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107485 37..456 -
1693494183.351232-CDS-P-canaliculata_contig107485:36..4561693494183.351232-CDS-P-canaliculata_contig107485:36..456Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107485 37..456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107485.989.1prot_P-canaliculata_contig107485.989.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107485 37..456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107485.989.1

>prot_P-canaliculata_contig107485.989.1 ID=prot_P-canaliculata_contig107485.989.1|Name=mRNA_P-canaliculata_contig107485.989.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
MDVKRTDCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAA
LRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDA
DKARFVPLAEIDALGMWPETVRVIREGYAKMVLFSADAP*
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mRNA from alignment at P-canaliculata_contig107485:37..456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107485.989.1 ID=mRNA_P-canaliculata_contig107485.989.1|Name=mRNA_P-canaliculata_contig107485.989.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at P-canaliculata_contig107485:37..456- (Pelvetia canaliculata dioecious)
ATGGATGTAAAACGAACAGATTGTGTCGGCGTGGTATGCATGAGCGGTGA AGAGGTGCTGCTCATCCAGCGCAGCACCGCCCCGCGCAAAGGCGAATGGT CCATCCCCGGCGGGCGGATTGAACCCAATGAAACCGAAGCCCAAGCGGCC TTGCGGGAACTTAGCGAAGAAACGGGTGTCAGCGCGGATTTGCTGACCAA AATCACTGTACTCAACGCGGATTTCGAGGGCTTTCACTACCGTCTCCACG ACTATCTCGCGCGCTGGACATCCGGCGAGCCGCAGGCCGGAGACGACGCG GATAAGGCCCGCTTTGTCCCGCTGGCGGAGATAGACGCGCTCGGCATGTG GCCGGAAACCGTGCGGGTTATCCGCGAGGGATATGCAAAAATGGTTTTGT TTTCGGCGGATGCGCCGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig107485:37..456-

>mRNA_P-canaliculata_contig107485.989.1 ID=mRNA_P-canaliculata_contig107485.989.1|Name=mRNA_P-canaliculata_contig107485.989.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig107485:37..456- (Pelvetia canaliculata dioecious)
ATGGATGTAAAACGAACAGATTGTGTCGGCGTGGTATGCATGAGCGGTGA
AGAGGTGCTGCTCATCCAGCGCAGCACCGCCCCGCGCAAAGGCGAATGGT
CCATCCCCGGCGGGCGGATTGAACCCAATGAAACCGAAGCCCAAGCGGCC
TTGCGGGAACTTAGCGAAGAAACGGGTGTCAGCGCGGATTTGCTGACCAA
AATCACTGTACTCAACGCGGATTTCGAGGGCTTTCACTACCGTCTCCACG
ACTATCTCGCGCGCTGGACATCCGGCGAGCCGCAGGCCGGAGACGACGCG
GATAAGGCCCGCTTTGTCCCGCTGGCGGAGATAGACGCGCTCGGCATGTG
GCCGGAAACCGTGCGGGTTATCCGCGAGGGATATGCAAAAATGGTTTTGT
TTTCGGCGGATGCGCCGTAGATGGATGTAAAACGAACAGATTGTGTCGGC
GTGGTATGCATGAGCGGTGAAGAGGTGCTGCTCATCCAGCGCAGCACCGC
CCCGCGCAAAGGCGAATGGTCCATCCCCGGCGGGCGGATTGAACCCAATG
AAACCGAAGCCCAAGCGGCCTTGCGGGAACTTAGCGAAGAAACGGGTGTC
AGCGCGGATTTGCTGACCAAAATCACTGTACTCAACGCGGATTTCGAGGG
CTTTCACTACCGTCTCCACGACTATCTCGCGCGCTGGACATCCGGCGAGC
CGCAGGCCGGAGACGACGCGGATAAGGCCCGCTTTGTCCCGCTGGCGGAG
ATAGACGCGCTCGGCATGTGGCCGGAAACCGTGCGGGTTATCCGCGAGGG
ATATGCAAAAATGGTTTTGTTTTCGGCGGATGCGCCGTAG
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