mRNA_P-canaliculata_contig107485.989.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI00199CF84C (DNA mismatch repair protein MutT n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00199CF84C) HSP 1 Score: 240 bits (612), Expect = 1.330e-79 Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 1
Query: 13 RTDCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYAKMVLFSADA 414
RTDCVGVVC+ G EVLLIQR TAPRKGEWSIPGGRIEPNETE+QAALREL+EET V+ADLLTKIT L+ADFEGFHYRLHDYLARWT GEP AGDDAD+ARFV L EIDALGMWPETVRVIREG+AKM LFS +A
Sbjct: 8 RTDCVGVVCLRGNEVLLIQRGTAPRKGEWSIPGGRIEPNETESQAALRELTEETSVTADLLTKITALDADFEGFHYRLHDYLARWTDGEPVAGDDADQARFVALTEIDALGMWPETVRVIREGHAKMALFSDNA 141
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI000478695C (NUDIX hydrolase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000478695C) HSP 1 Score: 166 bits (419), Expect = 3.400e-50 Identity = 79/124 (63.71%), Postives = 92/124 (74.19%), Query Frame = 1
Query: 1 MDVKRTDCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVI 372
+D DCVGV+C G++VLLI+R TAPRKGEWSIPGGRIE E+E AALREL EET + A L K+ ++A FE F+YRLHDY ARW SGEPQ GDDA ARFVP E+D LGMW +T VI
Sbjct: 7 IDCAPVDCVGVICFRGDDVLLIKRGTAPRKGEWSIPGGRIEDGESERDAALRELFEETSIMAALEDKVATIDAQFEDFNYRLHDYAARWISGEPQFGDDAADARFVPPHELDGLGMWSKTREVI 130
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A8J3CS84_9PROT (DNA mismatch repair protein MutT n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS84_9PROT) HSP 1 Score: 151 bits (381), Expect = 1.090e-44 Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query: 58 LLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYA 387
+LI+R+ PR GEWS+PGGRIEP E+EA AALREL+EETGV+A L K+ V+ ADFEGF YRLHDY A WTSG+P DDA +ARF+P+A+I ALGMW +T VIR+ Y+
Sbjct: 1 MLIRRANPPRAGEWSLPGGRIEPGESEADAALRELTEETGVTAMLGEKVAVIEADFEGFCYRLHDYAAVWTSGDPCGADDALEARFIPVADIGALGMWSKTNTVIRDAYS 110
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A420WIS7_9PROT (8-oxo-dGTP diphosphatase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WIS7_9PROT) HSP 1 Score: 151 bits (381), Expect = 1.640e-44 Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 19 DCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVI 372
DCVG++C GEEVLLI+R T PRKGEWSIPGGRIE E+EA AALREL EET V+A + +KI + A FEGF+Y LHDY+A W G P+AGDDA +A FV + +I MW +T VI
Sbjct: 8 DCVGIICFRGEEVLLIKRGTPPRKGEWSIPGGRIEAGESEASAALRELYEETSVTATIHSKIATIPAKFEGFNYILHDYVAIWQDGTPKAGDDASEAIFVTMEDISMKEMWSKTKEVI 125
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A848V0A9_9PROT (NUDIX hydrolase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V0A9_9PROT) HSP 1 Score: 150 bits (379), Expect = 3.400e-44 Identity = 70/120 (58.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 19 DCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIRE 378
DCVGVVC G +VLLI+R PR GEWSIPGGRIE ETE +A LREL+EET V A++L KI +++A F+G +RLHDY A WT +AGDDA A FV +++I L MWP+TVR+I++
Sbjct: 10 DCVGVVCFKGSDVLLIRRGKPPRMGEWSIPGGRIELGETEREAVLRELNEETNVDAEILGKIEIIDAQFDGEPFRLHDYAAIWTGKNVRAGDDAAHAEFVEMSKIGQLSMWPDTVRIIQK 129
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI001A9F8990 (NUDIX hydrolase n=1 Tax=Brevundimonas goettingensis TaxID=2774190 RepID=UPI001A9F8990) HSP 1 Score: 149 bits (377), Expect = 8.230e-44 Identity = 77/120 (64.17%), Postives = 88/120 (73.33%), Query Frame = 1
Query: 25 VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFE--GFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIRE 378
VGVVC+ GEEVLLI+R APR GEWS+PGGRIEP E AALREL EETGV AD++ + V++ F G HY L DY ARW SGEP AGDDA +ARFV L EIDAL W ET R+IR+
Sbjct: 14 VGVVCLRGEEVLLIRRGKAPRAGEWSLPGGRIEPGERAVDAALRELREETGVEADIIGLVDVVDGIFPEAGMHYVLIDYAARWVSGEPLAGDDAAEARFVRLEEIDALIDWGETRRIIRK 133
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI000405C82E (NUDIX hydrolase n=1 Tax=Brevundimonas aveniformis TaxID=370977 RepID=UPI000405C82E) HSP 1 Score: 145 bits (365), Expect = 4.150e-42 Identity = 75/131 (57.25%), Postives = 88/131 (67.18%), Query Frame = 1
Query: 25 VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYAKMVLFSADAP 417
VGVVC GEEVLLIQR PR G+WS+PGGRIEP E AALREL EETGV AD+L I V++ F HY L DY ARW SG+P AGDDA +A FVP+ E A W ET R++ GY + F++ AP
Sbjct: 7 VGVVCFRGEEVLLIQRGRPPRAGQWSLPGGRIEPGERAVDAALRELREETGVEADILGLIEVVDGLFPDHHYVLIDYAARWVSGDPVAGDDAAEAAFVPIQEALARVDWSETRRILAMGYQR---FASHAP 134
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A7W9A184_9CAUL (8-oxo-dGTP diphosphatase n=2 Tax=Brevundimonas halotolerans TaxID=69670 RepID=A0A7W9A184_9CAUL) HSP 1 Score: 145 bits (365), Expect = 6.000e-42 Identity = 76/141 (53.90%), Postives = 94/141 (66.67%), Query Frame = 1
Query: 4 DVKRTDC---------VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADF--EGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGYAKM 393
D+ TDC VGV+C+ G++VLLI+R PR GEWS+PGGR+EP ET AALREL+EETGV ADL + ++ F G HY L D+LARWTSGEP AGDDA ARF PL E++ W ET+RVIR A++
Sbjct: 3 DLPSTDCPPMSAPVAAVGVICLRGDQVLLIRRGQPPRLGEWSLPGGRVEPGETLRDAALRELAEETGVEADLGPLVDAVDGIFPESGRHYVLIDFLARWTSGEPVAGDDAADARFWPLDEVEQHVAWAETIRVIRLAVARL 143
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: A0A0Q7RSC7_9CAUL (Phosphohydrolase n=1 Tax=Brevundimonas sp. Root1423 TaxID=1736462 RepID=A0A0Q7RSC7_9CAUL) HSP 1 Score: 144 bits (362), Expect = 1.710e-41 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 25 VGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGF--HYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVI 372
VGVVC+ G+EVLLI+R T PR+GEWS+PGGRIEP E AALREL EETGV A++ I V++ F HY L DY ARW SGEP AGDDA +ARFVPL E++AL W ET R+I
Sbjct: 12 VGVVCLRGDEVLLIRRGTPPRQGEWSLPGGRIEPGERAVDAALRELREETGVEAEITGLIDVVDGVFPEARRHYVLIDYAARWMSGEPLAGDDATEARFVPLDEVEALVSWSETHRII 129
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Match: UPI00037758CB (NUDIX hydrolase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00037758CB) HSP 1 Score: 143 bits (361), Expect = 1.900e-41 Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = 1
Query: 19 DCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAALRELSEETGVSADLLTKITVLNADFEGFHYRLHDYLARWTSGEPQAGDDADKARFVPLAEIDALGMWPETVRVIREGY 384
D VGV+C G+EVLLI+RS PRKG+WS+PGGR+EP E+ AALREL EETGV+A L KI ++A+F HY LHDY+A++ SG+ +AGDDA A+F + +I L MWP+T V+R+ +
Sbjct: 12 DAVGVICFRGDEVLLIRRSKPPRKGDWSLPGGRVEPGESYESAALRELFEETGVTAKLGIKIATIDANFGTHHYLLHDYIAQYISGDVRAGDDAVDAQFFAMEDIAELKMWPKTEAVVRQAW 133 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107485.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig107485.989.1 >prot_P-canaliculata_contig107485.989.1 ID=prot_P-canaliculata_contig107485.989.1|Name=mRNA_P-canaliculata_contig107485.989.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp MDVKRTDCVGVVCMSGEEVLLIQRSTAPRKGEWSIPGGRIEPNETEAQAAback to top mRNA from alignment at P-canaliculata_contig107485:37..456- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig107485.989.1 ID=mRNA_P-canaliculata_contig107485.989.1|Name=mRNA_P-canaliculata_contig107485.989.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at P-canaliculata_contig107485:37..456- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig107485:37..456- >mRNA_P-canaliculata_contig107485.989.1 ID=mRNA_P-canaliculata_contig107485.989.1|Name=mRNA_P-canaliculata_contig107485.989.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig107485:37..456- (Pelvetia canaliculata dioecious)back to top |